RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 SPATA22Q8NHS9 363 aa4.05□□□□□ -1.76
BRCA1-204ENST00000412061 WDR36Q8NI36 951 aaKnown RBP4.05□□□□□ -1.76
BRCA1-204ENST00000412061 SPRYD4Q8WW59 207 aaPredicted RBP4.05□□□□□ -1.76
BRCA1-204ENST00000412061 RPL3LQ92901 407 aaKnown RBP4.05□□□□□ -1.76
BRCA1-204ENST00000412061 NXPE2Q96DL1 559 aa4.05□□□□□ -1.76
BRCA1-204ENST00000412061 IFT74Q96LB3 600 aa4.05□□□□□ -1.76
BRCA1-204ENST00000412061 ZNF385AQ96PM9 386 aaKnown RBP4.05□□□□□ -1.76
BRCA1-204ENST00000412061 RTP3Q9BQQ7 232 aa4.05□□□□□ -1.76
BRCA1-204ENST00000412061 SLC39A3Q9BRY0 314 aa4.05□□□□□ -1.76
BRCA1-204ENST00000412061 TMEM204Q9BSN7 226 aa4.05□□□□□ -1.76
BRCA1-204ENST00000412061 NLNQ9BYT8 704 aa4.05□□□□□ -1.76
BRCA1-204ENST00000412061 DHX33Q9H6R0 707 aaKnown RBP4.05□□□□□ -1.76
BRCA1-204ENST00000412061 KAT8Q9H7Z6 458 aaKnown RBP4.05□□□□□ -1.76
BRCA1-204ENST00000412061 PELI2Q9HAT8 420 aa4.05□□□□□ -1.76
BRCA1-204ENST00000412061 SGK2Q9HBY8 427 aa4.05□□□□□ -1.76
BRCA1-204ENST00000412061 NEK6Q9HC98 313 aa4.05□□□□□ -1.76
BRCA1-204ENST00000412061 ZFP14Q9HCL3 533 aa4.05□□□□□ -1.76
BRCA1-204ENST00000412061 RAB18Q9NP72 206 aa4.05□□□□□ -1.76
BRCA1-204ENST00000412061 CHST11Q9NPF2 352 aa4.05□□□□□ -1.76
BRCA1-204ENST00000412061 TMEM30AQ9NV96 361 aa4.05□□□□□ -1.76
BRCA1-204ENST00000412061 RNF186Q9NXI6 227 aa4.05□□□□□ -1.76
BRCA1-204ENST00000412061 MIOXQ9UGB7 285 aa4.05□□□□□ -1.76
BRCA1-204ENST00000412061 ZNF346Q9UL40 294 aaKnown RBP4.05□□□□□ -1.76
BRCA1-204ENST00000412061 VDAC3Q9Y277 283 aa4.05□□□□□ -1.76
BRCA1-204ENST00000412061 STK38LQ9Y2H1 464 aa4.05□□□□□ -1.76
BRCA1-204ENST00000412061 TNFRSF18Q9Y5U5 241 aa4.05□□□□□ -1.76
BRCA1-204ENST00000412061 R4GN57 208 aa4.05□□□□□ -1.76
BRCA1-204ENST00000412061 RNF123Q5XPI4 1314 aa4.05□□□□□ -1.76
BRCA1-204ENST00000412061 CARMIL1Q5VZK9 1371 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 LOC105371242A0A075B767 164 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 A0A087WUV0 522 aaPredicted RBP4.04□□□□□ -1.76
BRCA1-204ENST00000412061 SH3PXD2BA1X283 911 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 BTBD17A6NE02 478 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 HNRNPCL2B2RXH8 293 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 TULP2O00295 520 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 CLDN5O00501 218 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 ABCD4O14678 606 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 ARPC1BO15143 372 aaKnown RBP4.04□□□□□ -1.76
BRCA1-204ENST00000412061 ALOX15BO15296 676 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 ZSCAN12O43309 604 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 RNF13O43567 381 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 DFNA5O60443 496 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 SAP30O75446 220 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 ANP32DO95626 131 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 HPRP00739 348 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 GSTT2P0CG29 244 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 GSTT2BP0CG30 244 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 OR8G3PP0DMU2 310 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 DAOP14920 347 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 AMD1P17707 334 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 CD9P21926 228 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 RBMS1P29558 406 aaKnown RBP4.04□□□□□ -1.76
BRCA1-204ENST00000412061 BMI1P35226 326 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 USP8P40818 1118 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 CDKN2AP42771 156 aaKnown RBP4.04□□□□□ -1.76
BRCA1-204ENST00000412061 MLLT10P55197 1068 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 BRWD1-AS2P59051 145 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 LINC00205P59089 165 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 MAP2K1Q02750 393 aaPredicted RBP4.04□□□□□ -1.76
BRCA1-204ENST00000412061 CSTF1Q05048 431 aaKnown RBP4.04□□□□□ -1.76
BRCA1-204ENST00000412061 GPR50Q13585 617 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 GTF2H2Q13888 395 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 ELAVL3Q14576 367 aaKnown RBP4.04□□□□□ -1.76
BRCA1-204ENST00000412061 LRIT3Q3SXY7 679 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 SLC35D3Q5M8T2 416 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 SPANXN2Q5MJ10 180 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 C10orf120Q5SQS8 335 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 LRRC66Q68CR7 880 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 ATL3Q6DD88 541 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 TTC19Q6DKK2 380 aaPredicted RBP4.04□□□□□ -1.76
BRCA1-204ENST00000412061 GTF2H2CQ6P1K8 395 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 CWC27Q6UX04 472 aaKnown RBP4.04□□□□□ -1.76
BRCA1-204ENST00000412061 Q6ZPB1 254 aaPredicted RBP4.04□□□□□ -1.76
BRCA1-204ENST00000412061 CREB3L2Q70SY1 520 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 ZNF554Q86TJ5 538 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 VPS36Q86VN1 386 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 EFCAB13Q8IY85 973 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 SLC38A6Q8IZM9 456 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 OFCC1Q8IZS5 231 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 RBMXL3Q8N7X1 1067 aaKnown RBP4.04□□□□□ -1.76
BRCA1-204ENST00000412061 KCNH5Q8NCM2 988 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 SPATA4Q8NEY3 305 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 OR13C5Q8NGS8 318 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 OR8K3Q8NH51 312 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 SCARB1Q8WTV0 552 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 PHLDA1Q8WV24 401 aaPredicted RBP4.04□□□□□ -1.76
BRCA1-204ENST00000412061 SLC35C1Q96A29 364 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 ZNF274Q96GC6 653 aaPredicted RBP4.04□□□□□ -1.76
BRCA1-204ENST00000412061 INPP4AQ96PE3 977 aaPredicted RBP4.04□□□□□ -1.76
BRCA1-204ENST00000412061 CDCA3Q99618 268 aaPredicted RBP4.04□□□□□ -1.76
BRCA1-204ENST00000412061 CHP1Q99653 195 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 OMDQ99983 421 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 BPIFA3Q9BQP9 254 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 ROPN1BQ9BZX4 212 aaPredicted RBP4.04□□□□□ -1.76
BRCA1-204ENST00000412061 TRIM9Q9C026 710 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 IL25Q9H293 177 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 TECRQ9NZ01 308 aaKnown RBP4.04□□□□□ -1.76
BRCA1-204ENST00000412061 OR6C2Q9NZP2 312 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 ZNF319Q9P2F9 582 aa4.04□□□□□ -1.76
BRCA1-204ENST00000412061 ZDHHC2Q9UIJ5 367 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms