RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 HRASLS5Q96KN8 279 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 OR2M4Q96R27 311 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 STON1Q9Y6Q2 735 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 SEMA3DO95025 777 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 WISP3O95389 354 aaPredicted RBP17.61■□□□□ 0.41
USP48-204ENST00000400301 IFI30P13284 250 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 ABATP80404 500 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 DNAJC22Q8N4W6 341 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 OR51G2Q8NGK0 314 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 ARRDC3Q96B67 414 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 MVB12BQ9H7P6 319 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 NDUFAF4Q9P032 175 aa17.61■□□□□ 0.41
USP48-204ENST00000400301 ENTPD6O75354 484 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 CSF2P04141 144 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 CD40LGP29965 261 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 PHC1P78364 1004 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 CSTF1Q05048 431 aaKnown RBP17.6■□□□□ 0.41
USP48-204ENST00000400301 ARMCX6Q7L4S7 300 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 GPR52Q9Y2T5 361 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 PCDHGA12O60330 932 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 PRRT3Q5FWE3 981 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 PRPF38BQ5VTL8 546 aaKnown RBP17.6■□□□□ 0.41
USP48-204ENST00000400301 POMZP3Q6PJE2 187 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 ENTHD1Q8IYW4 607 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 RC3H2Q9HBD1 1191 aaKnown RBP17.6■□□□□ 0.41
USP48-204ENST00000400301 SPATA6Q9NWH7 488 aaPredicted RBP17.6■□□□□ 0.41
USP48-204ENST00000400301 LYARQ9NX58 379 aaKnown RBP17.6■□□□□ 0.41
USP48-204ENST00000400301 EXOSC1Q9Y3B2 195 aaKnown RBP17.6■□□□□ 0.41
USP48-204ENST00000400301 ANKRD28O15084 1053 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 SSNA1O43805 119 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 GABARAPO95166 117 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 CXCL10P02778 98 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 ACPPP15309 386 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 RGS6P49758 472 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 PGDP52209 483 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 CDK3Q00526 305 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 DSG2Q14126 1118 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 E2F2Q14209 437 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 C8orf82Q6P1X6 216 aaPredicted RBP17.6■□□□□ 0.41
USP48-204ENST00000400301 ZNF852Q6ZMS4 543 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 OR4N5Q8IXE1 308 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 ZFP41Q8N8Y5 198 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 TMIEQ8NEW7 156 aa17.6■□□□□ 0.41
USP48-204ENST00000400301 SLC5A10A0PJK1 596 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 HCN1O60741 890 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 RCBTB2O95199 551 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 IGFBP4P22692 258 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 ACADLP28330 430 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 NDUFA5Q16718 116 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 Q6ZNX1 250 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 MSRB3Q8IXL7 192 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 OR52E4Q8NGH9 312 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 OR52P1PQ8NH57 321 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 NLGN3Q9NZ94 848 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 STOML2Q9UJZ1 356 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 B3GNT3Q9Y2A9 372 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 HCFC2Q9Y5Z7 792 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 FRS3O43559 492 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 RNF144AP50876 292 aaPredicted RBP17.59■□□□□ 0.41
USP48-204ENST00000400301 ZNF563Q8TA94 476 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 ALG14Q96F25 216 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 ZC4H2Q9NQZ6 224 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 IKZF2Q9UKS7 526 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 RNGTTO60942 597 aaKnown RBP17.59■□□□□ 0.41
USP48-204ENST00000400301 HMGN2P05204 90 aaKnown RBP17.59■□□□□ 0.41
USP48-204ENST00000400301 S100A1P23297 94 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 RAB25P57735 213 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 SYPL1Q16563 259 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 ADPRMQ3LIE5 342 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 PNCKQ6P2M8 343 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 ASPGQ86U10 573 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 SCAIQ8N9R8 606 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 GATAD2BQ8WXI9 593 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 NR4A3Q92570 626 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 ZFP3Q96NJ6 502 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 COQ7Q99807 217 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 CLEC4MQ9H2X3 399 aaPredicted RBP17.59■□□□□ 0.41
USP48-204ENST00000400301 PADI2Q9Y2J8 665 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 EP400Q96L91 3159 aa17.59■□□□□ 0.41
USP48-204ENST00000400301 SOBPA7XYQ1 873 aa17.58■□□□□ 0.41
USP48-204ENST00000400301 DLGAP1O14490 977 aa17.58■□□□□ 0.41
USP48-204ENST00000400301 MRPL19P49406 292 aaKnown RBP17.58■□□□□ 0.41
USP48-204ENST00000400301 CSRP3P50461 194 aa17.58■□□□□ 0.41
USP48-204ENST00000400301 YBX1P67809 324 aaKnown RBP17.58■□□□□ 0.41
USP48-204ENST00000400301 SLC35A2P78381 396 aa17.58■□□□□ 0.41
USP48-204ENST00000400301 ARHGAP19Q14CB8 494 aa17.58■□□□□ 0.41
USP48-204ENST00000400301 C11orf88Q6PI97 169 aa17.58■□□□□ 0.41
USP48-204ENST00000400301 MEX3DQ86XN8 651 aaKnown RBP17.58■□□□□ 0.41
USP48-204ENST00000400301 NIPSNAP1Q9BPW8 284 aa17.58■□□□□ 0.41
USP48-204ENST00000400301 C17orf113A0A1B0GUU1 675 aa17.58■□□□□ 0.41
USP48-204ENST00000400301 CLDN24A6NM45 220 aa17.58■□□□□ 0.41
USP48-204ENST00000400301 IL1RNP18510 177 aa17.58■□□□□ 0.41
USP48-204ENST00000400301 CHMP24386 653 aa17.58■□□□□ 0.41
USP48-204ENST00000400301 SOX3P41225 446 aa17.58■□□□□ 0.41
USP48-204ENST00000400301 NDUFAF6Q330K2 333 aa17.58■□□□□ 0.41
USP48-204ENST00000400301 PPP2R2DQ66LE6 453 aa17.58■□□□□ 0.41
USP48-204ENST00000400301 SHFQ7M4L6 423 aa17.58■□□□□ 0.41
USP48-204ENST00000400301 AMIGO1Q86WK6 493 aa17.58■□□□□ 0.41
USP48-204ENST00000400301 OR6K6Q8NGW6 343 aa17.58■□□□□ 0.41
USP48-204ENST00000400301 HMGB4Q8WW32 186 aa17.58■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 166.9 ms