RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 ACTG1P63261 375 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 HYAL2Q12891 473 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 FKBP1CQ5VVH2 108 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 MLIPQ5VWP3 458 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 CLEC20AQ6ZU45 233 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 SIMC1Q8NDZ2 872 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 OR1J4Q8NGS1 313 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 CHFRQ96EP1 664 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 STRA6Q9BX79 667 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 HRH4Q9H3N8 390 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 A0A1W2PQ09 198 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 HPGDSO60760 199 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 SNNO75324 88 aaPredicted RBP11.35□□□□□ -0.59
SYNPO-202ENST00000394243 CLDN7O95471 211 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 CFL1P23528 166 aaKnown RBP11.35□□□□□ -0.59
SYNPO-202ENST00000394243 RPL10P27635 214 aaKnown RBP11.35□□□□□ -0.59
SYNPO-202ENST00000394243 GMPRP36959 345 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 FKBP1AP62942 108 aaKnown RBP11.35□□□□□ -0.59
SYNPO-202ENST00000394243 CYCSP99999 105 aaKnown RBP11.35□□□□□ -0.59
SYNPO-202ENST00000394243 ZFAND4Q86XD8 727 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 ARL14EPQ8N8R7 260 aaPredicted RBP11.35□□□□□ -0.59
SYNPO-202ENST00000394243 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.35□□□□□ -0.59
SYNPO-202ENST00000394243 PEBP4Q96S96 227 aa11.35□□□□□ -0.59
SYNPO-202ENST00000394243 MAFBQ9Y5Q3 323 aaPredicted RBP11.35□□□□□ -0.59
SYNPO-202ENST00000394243 WASHC1A8K0Z3 465 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 C11orf98E9PRG8 122 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 AOC2O75106 756 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 MAT2AP31153 395 aaKnown RBP11.34□□□□□ -0.59
SYNPO-202ENST00000394243 DPP6P42658 865 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 ETV1P50549 477 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 MGAT3Q09327 533 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 PPA1Q15181 289 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 RAB11BQ15907 218 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 NKPD1Q17RQ9 610 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 AGTRAPQ6RW13 159 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 SUMF2Q8NBJ7 301 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 MROQ9BYG7 248 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 MAF1Q9H063 256 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 OSBPL2Q9H1P3 480 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 ATG4BQ9Y4P1 393 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 A0A1W2PPL8 197 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 K7EPK0 472 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 SOX1O00570 391 aaPredicted RBP11.34□□□□□ -0.59
SYNPO-202ENST00000394243 SLC31A1O15431 190 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 TBX18O95935 607 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 SCGB1D1O95968 90 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 SNHG28P0DPA3 235 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 HCAR3P49019 387 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 GPAT4Q86UL3 456 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 CCDC71Q8IV32 467 aaPredicted RBP11.34□□□□□ -0.59
SYNPO-202ENST00000394243 FAM71E2Q8N5Q1 922 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 PQLC3Q8N755 202 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 SLC5A11Q8WWX8 675 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 TXNL4BQ9NX01 149 aaKnown RBP11.34□□□□□ -0.59
SYNPO-202ENST00000394243 UBE2J1Q9Y385 318 aaPredicted RBP11.34□□□□□ -0.59
SYNPO-202ENST00000394243 UGT2A1Q9Y4X1 527 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 UPK3BL1B0FP48 263 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 ANKRD66B4E2M5 251 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 UPK3BL2E5RIL1 263 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 ACVRL1P37023 503 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 DPY19L2P1Q6NXN4 242 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 TFAP2CQ92754 450 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 URM1Q9BTM9 101 aaKnown RBP11.34□□□□□ -0.59
SYNPO-202ENST00000394243 SDHAF3Q9NRP4 125 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 ZDHHC7Q9NXF8 308 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 TRAV18A0A075B6X5 111 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 OR7A17O14581 309 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 NRP1O14786 923 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 PRICKLE3O43900 615 aaPredicted RBP11.34□□□□□ -0.59
SYNPO-202ENST00000394243 SLC5A2P31639 672 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 CTNNB1P35222 781 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 PBX2P40425 430 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 GPR4P46093 362 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 LEPRP48357 1165 aaKnown RBP11.34□□□□□ -0.59
SYNPO-202ENST00000394243 PDGFRLQ15198 375 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 ITPRIPL2Q3MIP1 535 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 C12orf45Q8N5I9 185 aaPredicted RBP11.34□□□□□ -0.59
SYNPO-202ENST00000394243 ST7LQ8TDW4 575 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 PXYLP1Q8TE99 480 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 NUS1Q96E22 293 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 ZNF599Q96NL3 588 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 LMF1Q96S06 567 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 SUV39H2Q9H5I1 410 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 IL21RQ9HBE5 538 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 Q9N2J8 555 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 NME7Q9Y5B8 376 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 MYH11P35749 1972 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 OTOL1A6NHN0 477 aaPredicted RBP11.34□□□□□ -0.59
SYNPO-202ENST00000394243 SLC22A31A6NKX4 558 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 PIP5K1CO60331 668 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 MMP3P08254 477 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 H2BFMP0C1H6 154 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 CCNOP22674 350 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 CAPZA1P52907 286 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 BCL2A1Q16548 175 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 BORAQ6PGQ7 559 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 SUSD1Q6UWL2 747 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 IFNL1Q8IU54 200 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 DNAJC5GQ8N7S2 189 aa11.34□□□□□ -0.59
SYNPO-202ENST00000394243 ZNF419Q96HQ0 510 aaPredicted RBP11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms