RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 NEIL3Q8TAT5 605 aa17.22■□□□□ 0.35
COL18A1-202ENST00000355480 CNIH3Q8TBE1 160 aa17.22■□□□□ 0.35
COL18A1-202ENST00000355480 NANSQ9NR45 359 aa17.22■□□□□ 0.35
COL18A1-202ENST00000355480 ACSL6Q9UKU0 697 aa17.22■□□□□ 0.35
COL18A1-202ENST00000355480 GOLGA4Q13439 2230 aaKnown RBP17.21■□□□□ 0.35
COL18A1-202ENST00000355480 DLGAP1O14490 977 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 TYROBPO43914 113 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 SLC19A2O60779 497 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 UQCRC1P31930 480 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 ARSDP51689 593 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 UGT8Q16880 541 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 DEFB110Q30KQ9 67 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 LPAR4Q99677 370 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 ZNF451Q9Y4E5 1061 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 SCAMP2O15127 329 aaKnown RBP17.21■□□□□ 0.35
COL18A1-202ENST00000355480 CYBAP13498 195 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 HOXA11P31270 313 aaPredicted RBP17.21■□□□□ 0.35
COL18A1-202ENST00000355480 KDELR2P33947 212 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 TAS2R38P59533 333 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 MLC1Q15049 377 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 TCTE1Q5JU00 501 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 ZNF367Q7RTV3 350 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 ZNF584Q8IVC4 421 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 SEC14L1Q92503 715 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 AKAP1Q92667 903 aaKnown RBP eCLIP17.21■□□□□ 0.357e-8■■■■□ 21.4
COL18A1-202ENST00000355480 FBXL8Q96CD0 374 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 RXFP3Q9NSD7 469 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 ATE1O95260 518 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 DSC1Q08554 894 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 KCNAB2Q13303 367 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 WDR20Q8TBZ3 569 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 TMEM40Q8WWA1 233 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 ASB15Q8WXK1 588 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 RFT1Q96AA3 541 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 KATNBL1Q9H079 304 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 EXTL2Q9UBQ6 330 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 GTF2F2P13984 249 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 VEGFBP49765 207 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 ATXN7L3Q14CW9 347 aaPredicted RBP17.21■□□□□ 0.35
COL18A1-202ENST00000355480 OR4D1Q15615 310 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 TRAM1Q15629 374 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 CEACAM19Q7Z692 300 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 LIX1LQ8IVB5 337 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 PITX2Q99697 317 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 NUP50Q9UKX7 468 aa17.21■□□□□ 0.35
COL18A1-202ENST00000355480 ANHXE9PGG2 379 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 PTGESO14684 152 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 HTR1EP28566 365 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 FAM43BQ6ZT52 329 aaPredicted RBP17.2■□□□□ 0.34
COL18A1-202ENST00000355480 LARP4Q71RC2 724 aaKnown RBP eCLIP17.2■□□□□ 0.342e-8■□□□□ 8.8
COL18A1-202ENST00000355480 FTMTQ8N4E7 242 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 MOCOSQ96EN8 888 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 RDH12Q96NR8 316 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 RDH8Q9NYR8 311 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 ZNF226Q9NYT6 803 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 GPRC5BQ9NZH0 403 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 PTBP2Q9UKA9 531 aaKnown RBP17.2■□□□□ 0.34
COL18A1-202ENST00000355480 KCNIP3Q9Y2W7 256 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 MEIS3P2A8K0S8 358 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 YES1P07947 543 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 IRF2P14316 349 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 LHFPL3Q86UP9 236 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 OR13C3Q8NGS6 347 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 ZC3H10Q96K80 434 aaKnown RBP17.2■□□□□ 0.34
COL18A1-202ENST00000355480 MUS81Q96NY9 551 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 NECAB3Q96P71 396 aaPredicted RBP17.2■□□□□ 0.34
COL18A1-202ENST00000355480 URM1Q9BTM9 101 aaKnown RBP17.2■□□□□ 0.34
COL18A1-202ENST00000355480 TRAV6A0A075B6T7 132 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 GXYLT2A0PJZ3 443 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 LSM1O15116 133 aaKnown RBP17.2■□□□□ 0.34
COL18A1-202ENST00000355480 FAM189A1O60320 539 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 KCNJ13O60928 360 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 HBQ1P09105 142 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 HNRNPA2B1P22626 353 aaKnown RBP17.2■□□□□ 0.34
COL18A1-202ENST00000355480 FRKP42685 505 aaPredicted RBP17.2■□□□□ 0.34
COL18A1-202ENST00000355480 UBE2NP61088 152 aaKnown RBP17.2■□□□□ 0.34
COL18A1-202ENST00000355480 EMC10Q5UCC4 262 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 C12orf43Q96C57 262 aaKnown RBP17.2■□□□□ 0.34
COL18A1-202ENST00000355480 H3BUI4 141 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 EEDO75530 441 aaKnown RBP17.2■□□□□ 0.34
COL18A1-202ENST00000355480 SNU13P55769 128 aaKnown RBP17.2■□□□□ 0.34
COL18A1-202ENST00000355480 PHC1P78364 1004 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 NLGN4YQ8NFZ3 816 aaPredicted RBP17.2■□□□□ 0.34
COL18A1-202ENST00000355480 OR52B6Q8NGF0 335 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 BOCQ9BWV1 1114 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 RICTORQ6R327 1708 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 GPR37L1O60883 481 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 S100A2P29034 98 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 MAGEA8P43361 318 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 GPR4P46093 362 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 RIDAP52758 137 aaKnown RBP17.2■□□□□ 0.34
COL18A1-202ENST00000355480 TIGD4Q8IY51 512 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 LRRC15Q8TF66 581 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 SLC6A7Q99884 636 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 ZNF559Q9BR84 538 aa17.2■□□□□ 0.34
COL18A1-202ENST00000355480 LMO7Q8WWI1 1683 aa17.19■□□□□ 0.34
COL18A1-202ENST00000355480 SNAP29O95721 258 aa17.19■□□□□ 0.34
COL18A1-202ENST00000355480 PROS1P07225 676 aa17.19■□□□□ 0.34
COL18A1-202ENST00000355480 RHCEP18577 417 aa17.19■□□□□ 0.34
COL18A1-202ENST00000355480 PYCR1P32322 319 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms