RNA–Protein interactions for RNA: ENST00000333371.7

VPS33B-201, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33B, Length 2,767 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-201ENST00000333371 ZNF221Q9UK13 617 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 MRPS23Q9Y3D9 190 aaKnown RBP11.67□□□□□ -0.54
VPS33B-201ENST00000333371 NOX1Q9Y5S8 564 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 MN1Q10571 1320 aaPredicted RBP11.67□□□□□ -0.54
VPS33B-201ENST00000333371 GLOD5A6NK44 160 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 FAM47E-STBD1D6RA91 191 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 SLC9A3R1O14745 358 aaPredicted RBP11.67□□□□□ -0.54
VPS33B-201ENST00000333371 SLC28A2O43868 658 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 MPZL2O60487 215 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 SNX4O95219 450 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 CSF2P04141 144 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 HNRNPA1P09651 372 aaKnown RBP eCLIP11.67□□□□□ -0.54
VPS33B-201ENST00000333371 IL7P13232 177 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 CEBPBP17676 345 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 PSMA1P25786 263 aaKnown RBP11.67□□□□□ -0.54
VPS33B-201ENST00000333371 GPR1P46091 355 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 RHAGQ02094 409 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 ILKQ13418 452 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 GPR50Q13585 617 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 SAXO2Q658L1 398 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 ABI3BPQ7Z7G0 1075 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 SFTPA1Q8IWL2 248 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 PHC2Q8IXK0 858 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 ZFP41Q8N8Y5 198 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 XAGE5Q8WWM1 108 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 OTUB2Q96DC9 234 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 NEURL3Q96EH8 262 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 MACROD1Q9BQ69 325 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 QRSL1Q9H0R6 528 aaKnown RBP11.67□□□□□ -0.54
VPS33B-201ENST00000333371 PLSCR3Q9NRY6 295 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 CRNNQ9UBG3 495 aaPredicted RBP11.67□□□□□ -0.54
VPS33B-201ENST00000333371 SEC14L3Q9UDX4 400 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 ITGB1BP2Q9UKP3 347 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 GPR52Q9Y2T5 361 aa11.67□□□□□ -0.54
VPS33B-201ENST00000333371 MDC1Q14676 2089 aaKnown RBP11.66□□□□□ -0.54
VPS33B-201ENST00000333371 A0A075B6Q4 140 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 H7BY64 318 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 PDPK1O15530 556 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 IDH3BO43837 385 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 TMPRSS11DO60235 418 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 SERPIND1P05546 499 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 DDCP20711 480 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 CD79BP40259 229 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 PSPHP78330 225 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 HNRNPA0Q13151 305 aaKnown RBP11.66□□□□□ -0.54
VPS33B-201ENST00000333371 ATAT1Q5SQI0 421 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 C12orf73Q69YU5 71 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 PODNL1Q6PEZ8 512 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 ZNF517Q6ZMY9 492 aaPredicted RBP11.66□□□□□ -0.54
VPS33B-201ENST00000333371 FAM129CQ86XR2 697 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 CACUL1Q86Y37 369 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 FAM20CQ8IXL6 584 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 NANOGP1Q8N7R0 232 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 PRAP1Q96NZ9 151 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 TREX2Q9BQ50 279 aaPredicted RBP11.66□□□□□ -0.54
VPS33B-201ENST00000333371 TTYH2Q9BSA4 534 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 LHX9Q9NQ69 397 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 SLC23A2Q9UGH3 650 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 RWDD3Q9Y3V2 267 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 CHD9Q3L8U1 2897 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 TSPAN11A1L157 253 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 CAPN5O15484 640 aaPredicted RBP11.66□□□□□ -0.54
VPS33B-201ENST00000333371 SRPRAP08240 638 aaKnown RBP11.66□□□□□ -0.54
VPS33B-201ENST00000333371 PIPP12273 146 aaPredicted RBP11.66□□□□□ -0.54
VPS33B-201ENST00000333371 MMP11P24347 488 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 ACADLP28330 430 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 TIE1P35590 1138 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 RPL3P39023 403 aaKnown RBP11.66□□□□□ -0.54
VPS33B-201ENST00000333371 RORCP51449 518 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 SNRPGP62308 76 aaKnown RBP11.66□□□□□ -0.54
VPS33B-201ENST00000333371 UBE3AQ05086 875 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 DBPQ10586 325 aaPredicted RBP11.66□□□□□ -0.54
VPS33B-201ENST00000333371 HEPACAMQ14CZ8 416 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 USP30Q70CQ3 517 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 SPRED2Q7Z698 418 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 PLA2G15Q8NCC3 412 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 COQ10AQ96MF6 247 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 CCDC32Q9BV29 185 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 PLA2G12AQ9BZM1 189 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 SRRQ9GZT4 340 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 MIXL1Q9H2W2 232 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 TOR4AQ9NXH8 423 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 TRPC4Q9UBN4 977 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 A4GNTQ9UNA3 340 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 STUB1Q9UNE7 303 aa11.66□□□□□ -0.54
VPS33B-201ENST00000333371 DNMT3AQ9Y6K1 912 aaPredicted RBP11.66□□□□□ -0.54
VPS33B-201ENST00000333371 LINC01553A4QN01 128 aa11.65□□□□□ -0.54
VPS33B-201ENST00000333371 ZNF670-ZNF695F2Z2N8 137 aa11.65□□□□□ -0.54
VPS33B-201ENST00000333371 MYL12BO14950 172 aa11.65□□□□□ -0.54
VPS33B-201ENST00000333371 MSL3P1P0C860 447 aa11.65□□□□□ -0.54
VPS33B-201ENST00000333371 PTNP21246 168 aa11.65□□□□□ -0.54
VPS33B-201ENST00000333371 BSGP35613 385 aa11.65□□□□□ -0.54
VPS33B-201ENST00000333371 PRKAG1P54619 331 aa11.65□□□□□ -0.54
VPS33B-201ENST00000333371 HOXC5Q00444 222 aa11.65□□□□□ -0.54
VPS33B-201ENST00000333371 LARS2Q15031 903 aaKnown RBP11.65□□□□□ -0.54
VPS33B-201ENST00000333371 TOR1AIP1Q5JTV8 583 aa11.65□□□□□ -0.54
VPS33B-201ENST00000333371 MFSD4BQ5TF39 518 aa11.65□□□□□ -0.54
VPS33B-201ENST00000333371 FAM131AQ6UXB0 335 aa11.65□□□□□ -0.54
VPS33B-201ENST00000333371 ZER1Q7Z7L7 766 aa11.65□□□□□ -0.54
VPS33B-201ENST00000333371 IQCHQ86VS3 1027 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms