RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 Q6ZPB1 254 aaPredicted RBP18.42■□□□□ 0.54
USP48-201ENST00000308271 UBE2Q1Q7Z7E8 422 aa18.42■□□□□ 0.54
USP48-201ENST00000308271 ZNF227Q86WZ6 799 aa18.42■□□□□ 0.54
USP48-201ENST00000308271 OR7G3Q8NG95 312 aa18.42■□□□□ 0.54
USP48-201ENST00000308271 ZC3H10Q96K80 434 aaKnown RBP18.42■□□□□ 0.54
USP48-201ENST00000308271 ZNF639Q9UID6 485 aa18.42■□□□□ 0.54
USP48-201ENST00000308271 ZNF840PA6NDX5 716 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 E7EQ34 232 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 NDUFS4O43181 175 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 MTHFD2P13995 350 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 KDM4DQ6B0I6 523 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 ALKAL1Q6UXT8 129 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 CEP68Q76N32 757 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 ENTHD1Q8IYW4 607 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 FAM86B1Q8N7N1 296 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 DUSP21Q9H596 190 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 PCDHGA2Q9Y5H1 932 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 ITGB4P16144 1822 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 MUSKO15146 869 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 KMOO15229 486 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 RENP00797 406 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 APOC3P02656 99 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 CYP17A1P05093 508 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 PITPNBP48739 271 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 ELOAQ14241 798 aaKnown RBP18.41■□□□□ 0.54
USP48-201ENST00000308271 ZNF791Q3KP31 576 aaPredicted RBP18.41■□□□□ 0.54
USP48-201ENST00000308271 ZCCHC12Q6PEW1 402 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 KLHL24Q6TFL4 600 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 SERINC5Q86VE9 423 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 RNASE11Q8TAA1 199 aaKnown RBP18.41■□□□□ 0.54
USP48-201ENST00000308271 COQ10AQ96MF6 247 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 CDADC1Q9BWV3 514 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 TAS2R3Q9NYW6 316 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 ACTL7AQ9Y615 435 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 COL18A1P39060 1754 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 NFATC1O95644 943 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 C8AP07357 584 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 ELNP15502 786 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 WDR5P61964 334 aaKnown RBP18.41■□□□□ 0.54
USP48-201ENST00000308271 SP3Q02447 781 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 RAB40BQ12829 278 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 CDC20Q12834 499 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 FAM198BQ6UWH4 519 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 TMEM207Q6UWW9 146 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 ZNF627Q7L945 461 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 ATCAYQ86WG3 371 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 ADAD1Q96M93 576 aaKnown RBP18.41■□□□□ 0.54
USP48-201ENST00000308271 NUBP2Q9Y5Y2 271 aa18.41■□□□□ 0.54
USP48-201ENST00000308271 OR7A17O14581 309 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 RPP14O95059 124 aaKnown RBP18.4■□□□□ 0.54
USP48-201ENST00000308271 ALAS2P22557 587 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 CLCNKAP51800 687 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 CTU2Q2VPK5 515 aaKnown RBP18.4■□□□□ 0.54
USP48-201ENST00000308271 TSPAN33Q86UF1 283 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 SETD7Q8WTS6 366 aaKnown RBP18.4■□□□□ 0.54
USP48-201ENST00000308271 THRSPQ92748 146 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 FATE1Q969F0 183 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 TREM1Q9NP99 234 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 A0A1W2PRU2 124 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 TCRBV5S2A0A599 114 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 GNB5O14775 395 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 ADAM23O75077 832 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 RBBP9O75884 186 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 TRAPPC2P0DI81 140 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 TRAPPC2BP0DI82 140 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 PDZD9Q8IXQ8 264 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 SLC44A3Q8N4M1 653 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 DYNC2LI1Q8TCX1 351 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 HPF1Q9NWY4 346 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 PTTG3PQ9NZH4 202 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 CLDN4O14493 209 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 ITGA3P26006 1051 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 HOXC13P31276 330 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 INAVAQ3KP66 663 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 METAP1DQ6UB28 335 aaPredicted RBP18.4■□□□□ 0.54
USP48-201ENST00000308271 NXPE4Q6UWF7 544 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 LRRN1Q6UXK5 716 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 TMED4Q7Z7H5 227 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 NOP16Q9Y3C1 178 aaKnown RBP18.4■□□□□ 0.54
USP48-201ENST00000308271 ADAMTSL3P82987 1691 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 C8orf89P0DMQ9 161 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 DDOSTP39656 456 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 UGT3A2Q3SY77 523 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 MARCH8Q5T0T0 291 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 ARMC10Q8N2F6 343 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 TOR1AIP2Q8NFQ8 470 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 COQ8BQ96D53 544 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 C17orf62Q9BQA9 187 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 OR51J1Q9H342 316 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 AKIP1Q9NQ31 210 aa18.4■□□□□ 0.54
USP48-201ENST00000308271 GABRR3A8MPY1 467 aa18.39■□□□□ 0.54
USP48-201ENST00000308271 MRPL3P09001 348 aaKnown RBP18.39■□□□□ 0.54
USP48-201ENST00000308271 JUNDP17535 347 aa18.39■□□□□ 0.54
USP48-201ENST00000308271 RAB3BP20337 219 aa18.39■□□□□ 0.54
USP48-201ENST00000308271 TRIM46Q7Z4K8 759 aa18.39■□□□□ 0.54
USP48-201ENST00000308271 NLGN2Q8NFZ4 835 aa18.39■□□□□ 0.54
USP48-201ENST00000308271 SGCDQ92629 289 aa18.39■□□□□ 0.54
USP48-201ENST00000308271 MBOAT4Q96T53 435 aa18.39■□□□□ 0.54
USP48-201ENST00000308271 GPER1Q99527 375 aa18.39■□□□□ 0.54
USP48-201ENST00000308271 PSD2Q9BQI7 771 aa18.39■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms