RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 DGKEP52429 567 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 METTL4Q8N3J2 472 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 PTERQ96BW5 349 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 NELL2Q99435 816 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 GPN2Q9H9Y4 310 aaPredicted RBP13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 ACSL6Q9UKU0 697 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 LIPT1Q9Y234 373 aa13.37□□□□□ -0.27
CCDC88A-201ENST00000263630 RHCEP18577 417 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 EVI2BP34910 448 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 PBX2P40425 430 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 ETV6P41212 452 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 ZNF763Q0D2J5 394 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 MEF2DQ14814 521 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 TGFBIQ15582 683 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 USP50Q70EL3 339 aaPredicted RBP13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 THOC6Q86W42 341 aaKnown RBP13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 MMABQ96EY8 250 aaPredicted RBP13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 RNF170Q96K19 258 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 CPQQ9Y646 472 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 EDDM13A0A1B0GTR0 161 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 FHP07954 510 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 PTP4A2Q12974 167 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 DEDD2Q8WXF8 326 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 ACBD6Q9BR61 282 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 PCDHGC4Q9Y5F7 938 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 PRAF2O60831 178 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 ZIC2O95409 532 aaPredicted RBP13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 GAAP10253 952 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 FAM214AQ32MH5 1076 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 RNF130Q86XS8 419 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 DAZLQ92904 295 aaKnown RBP13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 OXSMQ9NWU1 459 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 FKBPLQ9UIM3 349 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 TXNL1O43396 289 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 RETP07949 1114 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 TLE4Q04727 773 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 GK3PQ14409 553 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 ATPAF1Q5TC12 328 aaPredicted RBP13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 CST9LP1Q5W188 147 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 CARD17Q5XLA6 110 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 CYP2W1Q8TAV3 490 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 FBXL8Q96CD0 374 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 GINS3Q9BRX5 216 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 PLEKHJ1Q9NW61 149 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 KLHL42Q9P2K6 505 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 FCF1Q9Y324 198 aaKnown RBP13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 SGCEO43556 437 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 ONECUT3O60422 494 aaPredicted RBP13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 TANGO2Q6ICL3 276 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 TMIGD1Q6UXZ0 262 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 OR8K5Q8NH50 307 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 FKBP10Q96AY3 582 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 ZNF599Q96NL3 588 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 GATA5Q9BWX5 397 aaPredicted RBP13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 SPATA31A6Q5VVP1 1343 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 GPR37L1O60883 481 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 FKTNO75072 461 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 DHPSP49366 369 aaPredicted RBP13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 OR5L2Q8NGL0 311 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 LRIG1Q96JA1 1093 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 VIRMAQ69YN4 1812 aaKnown RBP13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 TTC3P53804 2025 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 A8MU76 341 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 AOC2O75106 756 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 C7P10643 843 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 ZNF705AQ6ZN79 300 aaPredicted RBP13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 TMEM151BQ8IW70 566 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 OR4N5Q8IXE1 308 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 FAM109AQ8N4B1 249 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 C1orf52Q8N6N3 182 aaKnown RBP13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 CANT1Q8WVQ1 401 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 PRRT1Q99946 306 aa13.36□□□□□ -0.27
CCDC88A-201ENST00000263630 AGAP14A8MT82 685 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 GABARAPH6UMI1 98 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 GABARAPO95166 117 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 NTSR2O95665 410 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 CSF1P09603 554 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 ACP5P13686 325 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 RPL7P18124 248 aaKnown RBP13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 DUSP3P51452 185 aaPredicted RBP13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 F2RL1P55085 397 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 SFXN5Q8TD22 340 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 HMGB4Q8WW32 186 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 CHFRQ96EP1 664 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 FBRSQ9HAH7 460 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 IRS2Q9Y4H2 1338 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 SLC22A5O76082 557 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 CSTAP01040 98 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 BMP4P12644 408 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 CLCNKAP51800 687 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 SLAMF1Q13291 335 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 CDONQ4KMG0 1287 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 STEAP3Q658P3 488 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 ZNF574Q6ZN55 896 aaPredicted RBP13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 DCP2Q8IU60 420 aaKnown RBP13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 ZUFSPQ96AP4 578 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 TSSK2Q96PF2 358 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 OR52A5Q9H2C5 316 aa13.35□□□□□ -0.27
CCDC88A-201ENST00000263630 ACSS2Q9NR19 701 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms