RNA–Protein interactions for RNA: ENST00000636214.1

PNKP-225, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 805 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-225ENST00000636214 NIP7Q9Y221 180 aaKnown RBP eCLIP23.55■■□□□ 1.36
PNKP-225ENST00000636214 SBF1O95248 1867 aa23.54■■□□□ 1.36
PNKP-225ENST00000636214 KIF3CO14782 793 aa23.54■■□□□ 1.36
PNKP-225ENST00000636214 RASSF7Q02833 373 aa23.54■■□□□ 1.36
PNKP-225ENST00000636214 KIF6Q6ZMV9 814 aa23.54■■□□□ 1.36
PNKP-225ENST00000636214 C16orf71Q8IYS4 520 aaPredicted RBP23.54■■□□□ 1.36
PNKP-225ENST00000636214 NGEFQ8N5V2 710 aa23.54■■□□□ 1.36
PNKP-225ENST00000636214 LMNB1P20700 586 aa23.53■■□□□ 1.36
PNKP-225ENST00000636214 CNKSR1Q969H4 720 aa23.53■■□□□ 1.36
PNKP-225ENST00000636214 RRP7AQ9Y3A4 280 aaKnown RBP23.53■■□□□ 1.36
PNKP-225ENST00000636214 GTF2E1P29083 439 aaPredicted RBP23.52■■□□□ 1.36
PNKP-225ENST00000636214 TPTE2Q6XPS3 522 aa23.52■■□□□ 1.36
PNKP-225ENST00000636214 TMPOP42166 694 aaKnown RBP23.51■■□□□ 1.35
PNKP-225ENST00000636214 MASTLQ96GX5 879 aa23.51■■□□□ 1.35
PNKP-225ENST00000636214 NMRK2Q9NPI5 230 aa23.51■■□□□ 1.35
PNKP-225ENST00000636214 ZNF219Q9P2Y4 722 aaPredicted RBP23.51■■□□□ 1.35
PNKP-225ENST00000636214 ZC3H4Q9UPT8 1303 aaKnown RBP23.51■■□□□ 1.35
PNKP-225ENST00000636214 COL11A2P13942 1736 aaPredicted RBP23.5■■□□□ 1.35
PNKP-225ENST00000636214 FAM177BA6PVY3 158 aa23.5■■□□□ 1.35
PNKP-225ENST00000636214 MYL6BP14649 208 aa23.5■■□□□ 1.35
PNKP-225ENST00000636214 NEUROD2Q15784 382 aa23.5■■□□□ 1.35
PNKP-225ENST00000636214 STYK1Q6J9G0 422 aa23.5■■□□□ 1.35
PNKP-225ENST00000636214 CCDC146Q8IYE0 955 aa23.5■■□□□ 1.35
PNKP-225ENST00000636214 C21orf2O43822 256 aa23.49■■□□□ 1.35
PNKP-225ENST00000636214 TOMM70O94826 608 aa23.49■■□□□ 1.35
PNKP-225ENST00000636214 HSPA6P17066 643 aa23.49■■□□□ 1.35
PNKP-225ENST00000636214 BABAM1Q9NWV8 329 aa23.49■■□□□ 1.35
PNKP-225ENST00000636214 SRGNP10124 158 aa23.48■■□□□ 1.35
PNKP-225ENST00000636214 SOGA3Q5TF21 947 aa23.48■■□□□ 1.35
PNKP-225ENST00000636214 RUNDC1Q96C34 613 aa23.48■■□□□ 1.35
PNKP-225ENST00000636214 ERBB4Q15303 1308 aa23.48■■□□□ 1.35
PNKP-225ENST00000636214 CACNA1SQ13698 1873 aa23.47■■□□□ 1.35
PNKP-225ENST00000636214 ERVV-1B6SEH8 477 aa23.47■■□□□ 1.35
PNKP-225ENST00000636214 NYXQ9GZU5 481 aa23.47■■□□□ 1.35
PNKP-225ENST00000636214 MAP3K15Q6ZN16 1313 aa23.47■■□□□ 1.35
PNKP-225ENST00000636214 CCDC88AQ3V6T2 1871 aa23.47■■□□□ 1.35
PNKP-225ENST00000636214 EIF2S2P20042 333 aaKnown RBP23.46■■□□□ 1.35
PNKP-225ENST00000636214 HLFQ16534 295 aa23.46■■□□□ 1.35
PNKP-225ENST00000636214 PRPF40BQ6NWY9 871 aaKnown RBP23.46■■□□□ 1.35
PNKP-225ENST00000636214 CEP350Q5VT06 3117 aa23.45■■□□□ 1.34
PNKP-225ENST00000636214 NPR1P16066 1061 aa23.45■■□□□ 1.34
PNKP-225ENST00000636214 TAOK3Q9H2K8 898 aa23.45■■□□□ 1.34
PNKP-225ENST00000636214 PRKRIP1Q9H875 184 aaPredicted RBP23.45■■□□□ 1.34
PNKP-225ENST00000636214 TNRC6CQ9HCJ0 1690 aaKnown RBP23.44■■□□□ 1.34
PNKP-225ENST00000636214 NFKBIEO00221 500 aa23.44■■□□□ 1.34
PNKP-225ENST00000636214 LAS1LQ9Y4W2 734 aaKnown RBP23.44■■□□□ 1.34
PNKP-225ENST00000636214 NUP98P52948 1817 aa23.44■■□□□ 1.34
PNKP-225ENST00000636214 TIAM2Q8IVF5 1701 aa23.43■■□□□ 1.34
PNKP-225ENST00000636214 TTLL7Q6ZT98 887 aa23.43■■□□□ 1.34
PNKP-225ENST00000636214 ZBTB3Q9H5J0 574 aa23.43■■□□□ 1.34
PNKP-225ENST00000636214 RRAGCQ9HB90 399 aa23.43■■□□□ 1.34
PNKP-225ENST00000636214 SLX4Q8IY92 1834 aa23.43■■□□□ 1.34
PNKP-225ENST00000636214 ARFGEF2Q9Y6D5 1785 aa23.42■■□□□ 1.34
PNKP-225ENST00000636214 RBM46Q8TBY0 533 aaKnown RBP23.42■■□□□ 1.34
PNKP-225ENST00000636214 FER1L6Q2WGJ9 1857 aa23.41■■□□□ 1.34
PNKP-225ENST00000636214 ZEB1P37275 1124 aaPredicted RBP23.41■■□□□ 1.34
PNKP-225ENST00000636214 ERFEQ4G0M1 354 aa23.41■■□□□ 1.34
PNKP-225ENST00000636214 DPY19L2Q6NUT2 758 aa23.41■■□□□ 1.34
PNKP-225ENST00000636214 ADAMTS8Q9UP79 889 aa23.41■■□□□ 1.34
PNKP-225ENST00000636214 GLTPD2A6NH11 291 aa23.4■■□□□ 1.34
PNKP-225ENST00000636214 GPTP24298 496 aa23.4■■□□□ 1.34
PNKP-225ENST00000636214 CCDC93Q567U6 631 aa23.4■■□□□ 1.34
PNKP-225ENST00000636214 LTBP3Q9NS15 1303 aa23.39■■□□□ 1.34
PNKP-225ENST00000636214 ALDH1B1P30837 517 aa23.39■■□□□ 1.33
PNKP-225ENST00000636214 APLP1P51693 650 aa23.39■■□□□ 1.33
PNKP-225ENST00000636214 DICER1Q9UPY3 1922 aaKnown RBP23.38■■□□□ 1.33
PNKP-225ENST00000636214 KLRG2A4D1S0 409 aaPredicted RBP23.38■■□□□ 1.33
PNKP-225ENST00000636214 GIGYF2Q6Y7W6 1299 aaKnown RBP23.38■■□□□ 1.33
PNKP-225ENST00000636214 NUTM1Q86Y26 1132 aa23.38■■□□□ 1.33
PNKP-225ENST00000636214 IBTKQ9P2D0 1353 aaPredicted RBP23.38■■□□□ 1.33
PNKP-225ENST00000636214 PRELPP51888 382 aa23.37■■□□□ 1.33
PNKP-225ENST00000636214 PPP1R42Q7Z4L9 355 aa23.37■■□□□ 1.33
PNKP-225ENST00000636214 NECTIN2Q92692 538 aa23.37■■□□□ 1.33
PNKP-225ENST00000636214 VEGFAP15692 232 aaPredicted RBP23.36■■□□□ 1.33
PNKP-225ENST00000636214 FSTL1Q12841 308 aa23.36■■□□□ 1.33
PNKP-225ENST00000636214 PARP10Q53GL7 1025 aa23.36■■□□□ 1.33
PNKP-225ENST00000636214 RPGRQ92834 1020 aaKnown RBP23.36■■□□□ 1.33
PNKP-225ENST00000636214 CHL1O00533 1208 aa23.35■■□□□ 1.33
PNKP-225ENST00000636214 TRIM35Q9UPQ4 493 aa23.35■■□□□ 1.33
PNKP-225ENST00000636214 ABCC12Q96J65 1359 aa23.35■■□□□ 1.33
PNKP-225ENST00000636214 AIMP1Q12904 312 aaKnown RBP23.34■■□□□ 1.33
PNKP-225ENST00000636214 HSP90AB3PQ58FF7 597 aa23.34■■□□□ 1.33
PNKP-225ENST00000636214 RTKN2Q8IZC4 609 aa23.34■■□□□ 1.33
PNKP-225ENST00000636214 SMC1BQ8NDV3 1235 aa23.34■■□□□ 1.33
PNKP-225ENST00000636214 UBN2Q6ZU65 1347 aa23.33■■□□□ 1.33
PNKP-225ENST00000636214 ANXA1P04083 346 aa23.33■■□□□ 1.33
PNKP-225ENST00000636214 CALD1Q05682 793 aaKnown RBP23.33■■□□□ 1.33
PNKP-225ENST00000636214 PDIA6Q15084 440 aa23.33■■□□□ 1.33
PNKP-225ENST00000636214 SUSD4Q5VX71 490 aa23.33■■□□□ 1.33
PNKP-225ENST00000636214 ZNF34Q8IZ26 560 aa23.33■■□□□ 1.33
PNKP-225ENST00000636214 FKBP4Q02790 459 aaKnown RBP eCLIP23.32■■□□□ 1.32
PNKP-225ENST00000636214 PROSER3Q2NL68 480 aa23.32■■□□□ 1.32
PNKP-225ENST00000636214 HDGFL1Q5TGJ6 251 aa23.32■■□□□ 1.32
PNKP-225ENST00000636214 HOXB7P09629 217 aa23.31■■□□□ 1.32
PNKP-225ENST00000636214 COPS6Q7L5N1 327 aa23.31■■□□□ 1.32
PNKP-225ENST00000636214 XAGE3Q8WTP9 111 aa23.31■■□□□ 1.32
PNKP-225ENST00000636214 RBM17Q96I25 401 aaKnown RBP23.31■■□□□ 1.32
PNKP-225ENST00000636214 CFAP44Q96MT7 982 aa23.31■■□□□ 1.32
PNKP-225ENST00000636214 UTP14AQ9BVJ6 771 aaKnown RBP23.31■■□□□ 1.32
PNKP-225ENST00000636214 DDX21Q9NR30 783 aaKnown RBP eCLIP23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms