RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 BAZ2BQ9UIF8 2168 aaKnown RBP6.88□□□□□ -1.31
SCN1A-212ENST00000636194 TNNT1P13805 278 aa6.88□□□□□ -1.31
SCN1A-212ENST00000636194 IGHMBP2P38935 993 aaKnown RBP6.88□□□□□ -1.31
SCN1A-212ENST00000636194 PDE1CQ14123 709 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-212ENST00000636194 CCDC94Q9BW85 323 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-212ENST00000636194 UBA5Q9GZZ9 404 aa6.88□□□□□ -1.31
SCN1A-212ENST00000636194 PLCB4Q15147 1175 aa6.87□□□□□ -1.31
SCN1A-212ENST00000636194 ZNF569Q5MCW4 686 aa6.87□□□□□ -1.31
SCN1A-212ENST00000636194 SELENOOQ9BVL4 669 aa6.87□□□□□ -1.31
SCN1A-212ENST00000636194 STRN4Q9NRL3 753 aa6.87□□□□□ -1.31
SCN1A-212ENST00000636194 SFPQP23246 707 aaKnown RBP eCLIP6.87□□□□□ -1.31
SCN1A-212ENST00000636194 CTAGE6Q86UF2 777 aa6.87□□□□□ -1.31
SCN1A-212ENST00000636194 KIF18AQ8NI77 898 aa6.87□□□□□ -1.31
SCN1A-212ENST00000636194 NUTM2FA1L443 756 aa6.87□□□□□ -1.31
SCN1A-212ENST00000636194 ZBTB17Q13105 803 aa6.87□□□□□ -1.31
SCN1A-212ENST00000636194 VPS52Q8N1B4 723 aa6.87□□□□□ -1.31
SCN1A-212ENST00000636194 SPC24Q8NBT2 197 aa6.87□□□□□ -1.31
SCN1A-212ENST00000636194 VCX3AQ9NNX9 186 aa6.87□□□□□ -1.31
SCN1A-212ENST00000636194 WRNQ14191 1432 aaPredicted RBP eCLIP6.87□□□□□ -1.31
SCN1A-212ENST00000636194 SH3BGRP55822 239 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-212ENST00000636194 CDR2Q01850 454 aa6.87□□□□□ -1.31
SCN1A-212ENST00000636194 AKAP2Q9Y2D5 859 aa6.87□□□□□ -1.31
SCN1A-212ENST00000636194 TRPC3Q13507 836 aa6.87□□□□□ -1.31
SCN1A-212ENST00000636194 NUP88Q99567 741 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-212ENST00000636194 NLRP2Q9NX02 1062 aa6.87□□□□□ -1.31
SCN1A-212ENST00000636194 LRP2BPQ9P2M1 347 aa6.87□□□□□ -1.31
SCN1A-212ENST00000636194 LPXNO60711 386 aa6.86□□□□□ -1.31
SCN1A-212ENST00000636194 ZPR1O75312 459 aa6.86□□□□□ -1.31
SCN1A-212ENST00000636194 YEATS4O95619 227 aa6.86□□□□□ -1.31
SCN1A-212ENST00000636194 PKD2Q13563 968 aa6.86□□□□□ -1.31
SCN1A-212ENST00000636194 USP25Q9UHP3 1055 aa6.86□□□□□ -1.31
SCN1A-212ENST00000636194 FMN1Q68DA7 1419 aa6.86□□□□□ -1.31
SCN1A-212ENST00000636194 KDM4AO75164 1064 aa6.86□□□□□ -1.31
SCN1A-212ENST00000636194 CALML4Q96GE6 196 aa6.86□□□□□ -1.31
SCN1A-212ENST00000636194 PPME1Q9Y570 386 aa6.86□□□□□ -1.31
SCN1A-212ENST00000636194 MYBBP1AQ9BQG0 1328 aaKnown RBP6.86□□□□□ -1.31
SCN1A-212ENST00000636194 MAK16Q9BXY0 300 aaKnown RBP6.86□□□□□ -1.31
SCN1A-212ENST00000636194 CAVIN4Q5BKX8 364 aa6.86□□□□□ -1.31
SCN1A-212ENST00000636194 ERMNQ8TAM6 284 aa6.86□□□□□ -1.31
SCN1A-212ENST00000636194 NAA25Q14CX7 972 aa6.86□□□□□ -1.31
SCN1A-212ENST00000636194 SMARCC1Q92922 1105 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-212ENST00000636194 SAMM50Q9Y512 469 aa6.86□□□□□ -1.31
SCN1A-212ENST00000636194 PALM3A6NDB9 673 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-212ENST00000636194 CEBPZQ03701 1054 aaKnown RBP6.86□□□□□ -1.31
SCN1A-212ENST00000636194 PRPF4BQ13523 1007 aaKnown RBP6.86□□□□□ -1.31
SCN1A-212ENST00000636194 CCDC170Q8IYT3 715 aa6.86□□□□□ -1.31
SCN1A-212ENST00000636194 NECTIN2Q92692 538 aa6.86□□□□□ -1.31
SCN1A-212ENST00000636194 ANKIB1Q9P2G1 1089 aa6.86□□□□□ -1.31
SCN1A-212ENST00000636194 CIB2O75838 187 aa6.86□□□□□ -1.31
SCN1A-212ENST00000636194 ZBTB41Q5SVQ8 909 aa6.86□□□□□ -1.31
SCN1A-212ENST00000636194 CAPZA3Q96KX2 299 aa6.86□□□□□ -1.31
SCN1A-212ENST00000636194 BEGAINQ9BUH8 593 aa6.86□□□□□ -1.31
SCN1A-212ENST00000636194 MKNK2Q9HBH9 465 aa6.86□□□□□ -1.31
SCN1A-212ENST00000636194 FAM8A1Q9UBU6 413 aa6.86□□□□□ -1.31
SCN1A-212ENST00000636194 STK10O94804 968 aaKnown RBP6.85□□□□□ -1.31
SCN1A-212ENST00000636194 TUBB4BP68371 445 aa6.85□□□□□ -1.31
SCN1A-212ENST00000636194 CCDC50Q8IVM0 306 aa6.85□□□□□ -1.31
SCN1A-212ENST00000636194 C22orf23Q9BZE7 217 aa6.85□□□□□ -1.31
SCN1A-212ENST00000636194 CTAGE5O15320 804 aa6.85□□□□□ -1.31
SCN1A-212ENST00000636194 DNAJC8O75937 253 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-212ENST00000636194 U3KPZ7 1027 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-212ENST00000636194 GAS2L2Q8NHY3 880 aa6.85□□□□□ -1.31
SCN1A-212ENST00000636194 TSPYL2Q9H2G4 693 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-212ENST00000636194 SPECC1L-ADORA2AF8WAN1 911 aa6.85□□□□□ -1.31
SCN1A-212ENST00000636194 IL27Q8NEV9 243 aa6.85□□□□□ -1.31
SCN1A-212ENST00000636194 OPTNQ96CV9 577 aa6.85□□□□□ -1.31
SCN1A-212ENST00000636194 DDX27Q96GQ7 796 aaKnown RBP6.85□□□□□ -1.31
SCN1A-212ENST00000636194 SPAG5Q96R06 1193 aa6.85□□□□□ -1.31
SCN1A-212ENST00000636194 XRCC6P12956 609 aaKnown RBP eCLIP6.85□□□□□ -1.31
SCN1A-212ENST00000636194 UTP14CQ5TAP6 766 aaKnown RBP6.85□□□□□ -1.31
SCN1A-212ENST00000636194 MCM10Q7L590 875 aa6.85□□□□□ -1.31
SCN1A-212ENST00000636194 ZSCAN16Q9H4T2 348 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-212ENST00000636194 LUC7L2Q9Y383 392 aaKnown RBP6.85□□□□□ -1.31
SCN1A-212ENST00000636194 FIBPO43427 364 aa6.85□□□□□ -1.31
SCN1A-212ENST00000636194 PRPF40AO75400 957 aaKnown RBP6.85□□□□□ -1.31
SCN1A-212ENST00000636194 PYGLP06737 847 aa6.85□□□□□ -1.31
SCN1A-212ENST00000636194 MAP3K11Q16584 847 aa6.85□□□□□ -1.31
SCN1A-212ENST00000636194 PLEKHO1Q53GL0 409 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-212ENST00000636194 TDRD12Q587J7 1177 aaKnown RBP6.85□□□□□ -1.31
SCN1A-212ENST00000636194 ZSCAN32Q9NX65 697 aa6.85□□□□□ -1.31
SCN1A-212ENST00000636194 FAM169AQ9Y6X4 670 aa6.85□□□□□ -1.31
SCN1A-212ENST00000636194 KIF5BP33176 963 aa6.85□□□□□ -1.31
SCN1A-212ENST00000636194 MNAT1P51948 309 aa6.85□□□□□ -1.31
SCN1A-212ENST00000636194 CFAP70Q5T0N1 1121 aa6.85□□□□□ -1.31
SCN1A-212ENST00000636194 ATP6V1E2Q96A05 226 aa6.85□□□□□ -1.31
SCN1A-212ENST00000636194 TCP11L1Q9NUJ3 509 aa6.85□□□□□ -1.31
SCN1A-212ENST00000636194 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.85□□□□□ -1.31
SCN1A-212ENST00000636194 ATP5DP30049 168 aa6.84□□□□□ -1.31
SCN1A-212ENST00000636194 NLRP5P59047 1200 aa6.84□□□□□ -1.31
SCN1A-212ENST00000636194 GSTA5Q7RTV2 222 aa6.84□□□□□ -1.31
SCN1A-212ENST00000636194 MAATS1Q7Z4T9 603 aa6.84□□□□□ -1.31
SCN1A-212ENST00000636194 GOLGA8AA7E2F4 631 aa6.84□□□□□ -1.31
SCN1A-212ENST00000636194 GOLGA8BA8MQT2 603 aa6.84□□□□□ -1.31
SCN1A-212ENST00000636194 IVLP07476 585 aa6.84□□□□□ -1.31
SCN1A-212ENST00000636194 IQCA1Q86XH1 822 aa6.84□□□□□ -1.31
SCN1A-212ENST00000636194 CTCFLQ8NI51 663 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-212ENST00000636194 MTUS1Q9ULD2 1270 aa6.84□□□□□ -1.31
SCN1A-212ENST00000636194 ATP2C2O75185 946 aa6.84□□□□□ -1.31
SCN1A-212ENST00000636194 PHACTR2O75167 634 aa6.84□□□□□ -1.31
SCN1A-212ENST00000636194 POLR3DP05423 398 aaPredicted RBP6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms