RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 FANCAO15360 1455 aa12.97□□□□□ -0.33
CLN3-244ENST00000636147 ATP2B1P20020 1258 aa12.96□□□□□ -0.33
CLN3-244ENST00000636147 CUL4AQ13619 759 aa12.96□□□□□ -0.33
CLN3-244ENST00000636147 ERCC4Q92889 916 aaPredicted RBP12.96□□□□□ -0.33
CLN3-244ENST00000636147 ARHGEF5Q12774 1597 aa12.96□□□□□ -0.33
CLN3-244ENST00000636147 CCDC69A6NI79 296 aa12.96□□□□□ -0.33
CLN3-244ENST00000636147 ELF2Q15723 593 aa12.96□□□□□ -0.33
CLN3-244ENST00000636147 FSIP1Q8NA03 581 aa12.96□□□□□ -0.33
CLN3-244ENST00000636147 CALCOCO1Q9P1Z2 691 aa12.96□□□□□ -0.33
CLN3-244ENST00000636147 GNAT3A8MTJ3 354 aa12.96□□□□□ -0.34
CLN3-244ENST00000636147 C1orf141Q5JVX7 400 aa12.96□□□□□ -0.34
CLN3-244ENST00000636147 CCAR1Q8IX12 1150 aaKnown RBP12.96□□□□□ -0.34
CLN3-244ENST00000636147 ZNF396Q96N95 335 aaPredicted RBP12.96□□□□□ -0.34
CLN3-244ENST00000636147 DNAJC5Q9H3Z4 198 aa12.96□□□□□ -0.34
CLN3-244ENST00000636147 ANO10Q9NW15 660 aa12.96□□□□□ -0.34
CLN3-244ENST00000636147 HSPA4P34932 840 aa12.95□□□□□ -0.34
CLN3-244ENST00000636147 MTHFSDQ2M296 383 aaKnown RBP12.95□□□□□ -0.34
CLN3-244ENST00000636147 PUS7Q96PZ0 661 aaKnown RBP12.95□□□□□ -0.34
CLN3-244ENST00000636147 SBNO2Q9Y2G9 1366 aa12.95□□□□□ -0.34
CLN3-244ENST00000636147 HIP1O00291 1037 aa12.95□□□□□ -0.34
CLN3-244ENST00000636147 CHL1O00533 1208 aa12.95□□□□□ -0.34
CLN3-244ENST00000636147 SGSM2O43147 1006 aa12.95□□□□□ -0.34
CLN3-244ENST00000636147 CFAP100Q494V2 611 aa12.95□□□□□ -0.34
CLN3-244ENST00000636147 RUFY3Q7L099 469 aa12.95□□□□□ -0.34
CLN3-244ENST00000636147 CDC37L1Q7L3B6 337 aa12.95□□□□□ -0.34
CLN3-244ENST00000636147 ZSWIM4Q9H7M6 989 aa12.95□□□□□ -0.34
CLN3-244ENST00000636147 PHAXQ9H814 394 aaKnown RBP12.95□□□□□ -0.34
CLN3-244ENST00000636147 RIMS2Q9UQ26 1411 aa12.95□□□□□ -0.34
CLN3-244ENST00000636147 LARP1Q6PKG0 1096 aaKnown RBP12.95□□□□□ -0.34
CLN3-244ENST00000636147 BRF1Q92994 677 aa12.95□□□□□ -0.34
CLN3-244ENST00000636147 PRDM4Q9UKN5 801 aa12.95□□□□□ -0.34
CLN3-244ENST00000636147 HSP90AA4PQ58FG1 418 aa12.94□□□□□ -0.34
CLN3-244ENST00000636147 TTC6Q86TZ1 520 aa12.94□□□□□ -0.34
CLN3-244ENST00000636147 AOPEPQ8N6M6 819 aa12.94□□□□□ -0.34
CLN3-244ENST00000636147 ZNF397Q8NF99 534 aaPredicted RBP12.94□□□□□ -0.34
CLN3-244ENST00000636147 ZNF215Q9UL58 517 aaPredicted RBP12.94□□□□□ -0.34
CLN3-244ENST00000636147 E9PCH4 1651 aa12.94□□□□□ -0.34
CLN3-244ENST00000636147 NPHP3Q7Z494 1330 aa12.94□□□□□ -0.34
CLN3-244ENST00000636147 ZSCAN20P17040 1043 aaPredicted RBP12.94□□□□□ -0.34
CLN3-244ENST00000636147 ZNF75DP51815 510 aa12.94□□□□□ -0.34
CLN3-244ENST00000636147 UTP14CQ5TAP6 766 aaKnown RBP12.94□□□□□ -0.34
CLN3-244ENST00000636147 DNAI1Q9UI46 699 aa12.94□□□□□ -0.34
CLN3-244ENST00000636147 A0A087WWV3 80 aa12.94□□□□□ -0.34
CLN3-244ENST00000636147 SLU7O95391 586 aaKnown RBP12.94□□□□□ -0.34
CLN3-244ENST00000636147 BMS1Q14692 1282 aaKnown RBP12.94□□□□□ -0.34
CLN3-244ENST00000636147 ERC1Q8IUD2 1116 aa12.94□□□□□ -0.34
CLN3-244ENST00000636147 DNAAF4Q8WXU2 420 aa12.94□□□□□ -0.34
CLN3-244ENST00000636147 CDC42BPAQ5VT25 1732 aa12.93□□□□□ -0.34
CLN3-244ENST00000636147 DDX58O95786 925 aaKnown RBP12.93□□□□□ -0.34
CLN3-244ENST00000636147 WASHC4Q2M389 1173 aa12.93□□□□□ -0.34
CLN3-244ENST00000636147 ZSCAN25Q6NSZ9 544 aa12.93□□□□□ -0.34
CLN3-244ENST00000636147 SYT10Q6XYQ8 523 aa12.93□□□□□ -0.34
CLN3-244ENST00000636147 MTMR6Q9Y217 621 aa12.93□□□□□ -0.34
CLN3-244ENST00000636147 APPP05067 770 aa12.93□□□□□ -0.34
CLN3-244ENST00000636147 RAB11FIP4Q86YS3 637 aa12.93□□□□□ -0.34
CLN3-244ENST00000636147 SOS1Q07889 1333 aaPredicted RBP12.93□□□□□ -0.34
CLN3-244ENST00000636147 BRPF1P55201 1214 aaPredicted RBP12.93□□□□□ -0.34
CLN3-244ENST00000636147 STX1AQ16623 288 aa12.93□□□□□ -0.34
CLN3-244ENST00000636147 SLC26A8Q96RN1 970 aa12.93□□□□□ -0.34
CLN3-244ENST00000636147 RAD50Q92878 1312 aa12.93□□□□□ -0.34
CLN3-244ENST00000636147 ARHGAP29Q52LW3 1261 aa12.92□□□□□ -0.34
CLN3-244ENST00000636147 ABTB2Q8N961 1025 aa12.92□□□□□ -0.34
CLN3-244ENST00000636147 TTC37Q6PGP7 1564 aa12.92□□□□□ -0.34
CLN3-244ENST00000636147 LARGE1O95461 756 aa12.92□□□□□ -0.34
CLN3-244ENST00000636147 POLR3DP05423 398 aaPredicted RBP12.92□□□□□ -0.34
CLN3-244ENST00000636147 MYL6BP14649 208 aa12.92□□□□□ -0.34
CLN3-244ENST00000636147 ME3Q16798 604 aa12.92□□□□□ -0.34
CLN3-244ENST00000636147 CREB3L3Q68CJ9 461 aa12.92□□□□□ -0.34
CLN3-244ENST00000636147 CCDC171Q6TFL3 1326 aa12.92□□□□□ -0.34
CLN3-244ENST00000636147 OLFM4Q6UX06 510 aa12.92□□□□□ -0.34
CLN3-244ENST00000636147 ZNF710Q8N1W2 664 aa12.92□□□□□ -0.34
CLN3-244ENST00000636147 ADCK5Q3MIX3 580 aa12.92□□□□□ -0.34
CLN3-244ENST00000636147 HSP90B2PQ58FF3 399 aa12.92□□□□□ -0.34
CLN3-244ENST00000636147 TAF7LQ5H9L4 462 aa12.91□□□□□ -0.34
CLN3-244ENST00000636147 NEMFO60524 1076 aa12.91□□□□□ -0.34
CLN3-244ENST00000636147 PTH1RQ03431 593 aa12.91□□□□□ -0.34
CLN3-244ENST00000636147 NMIQ13287 307 aaPredicted RBP12.91□□□□□ -0.34
CLN3-244ENST00000636147 VPS53Q5VIR6 699 aa12.91□□□□□ -0.34
CLN3-244ENST00000636147 EVI5LQ96CN4 794 aa12.91□□□□□ -0.34
CLN3-244ENST00000636147 KIF2AO00139 706 aaPredicted RBP12.91□□□□□ -0.34
CLN3-244ENST00000636147 LMOD1P29536 600 aaPredicted RBP12.91□□□□□ -0.34
CLN3-244ENST00000636147 CACTINQ8WUQ7 758 aaKnown RBP12.91□□□□□ -0.34
CLN3-244ENST00000636147 FAM227BQ96M60 508 aa12.91□□□□□ -0.34
CLN3-244ENST00000636147 ZBTB22O15209 634 aa12.9□□□□□ -0.34
CLN3-244ENST00000636147 NR1I2O75469 434 aa12.9□□□□□ -0.34
CLN3-244ENST00000636147 RALYLQ86SE5 291 aaKnown RBP12.9□□□□□ -0.34
CLN3-244ENST00000636147 CWC15Q9P013 229 aaKnown RBP12.9□□□□□ -0.34
CLN3-244ENST00000636147 ZNF853P0CG23 659 aa12.9□□□□□ -0.34
CLN3-244ENST00000636147 PDIA4P13667 645 aaKnown RBP12.9□□□□□ -0.34
CLN3-244ENST00000636147 LEO1Q8WVC0 666 aaPredicted RBP12.9□□□□□ -0.34
CLN3-244ENST00000636147 NBPF7P0C2Y1 421 aaPredicted RBP12.9□□□□□ -0.34
CLN3-244ENST00000636147 CSB-PGBD3P0DP91 1061 aa12.9□□□□□ -0.34
CLN3-244ENST00000636147 JAK2O60674 1132 aa12.89□□□□□ -0.35
CLN3-244ENST00000636147 ZNF530Q6P9A1 599 aaPredicted RBP12.89□□□□□ -0.35
CLN3-244ENST00000636147 LEKR1Q6ZMV7 388 aa12.89□□□□□ -0.35
CLN3-244ENST00000636147 AK7Q96M32 723 aa12.89□□□□□ -0.35
CLN3-244ENST00000636147 CHPF2Q9P2E5 772 aa12.89□□□□□ -0.35
CLN3-244ENST00000636147 NCBP1Q09161 790 aaKnown RBP12.89□□□□□ -0.35
CLN3-244ENST00000636147 ARID5BQ14865 1188 aa12.89□□□□□ -0.35
CLN3-244ENST00000636147 ERCC6LQ2NKX8 1250 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms