RNA–Protein interactions for RNA: ENST00000635450.2

LINC00339-209, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 947 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-209ENST00000635450 CCDC146Q8IYE0 955 aa20.47■□□□□ 0.87
LINC00339-209ENST00000635450 CNBD1Q8NA66 436 aa20.47■□□□□ 0.87
LINC00339-209ENST00000635450 SETDB2Q96T68 719 aa20.47■□□□□ 0.87
LINC00339-209ENST00000635450 ADAMTS8Q9UP79 889 aa20.47■□□□□ 0.87
LINC00339-209ENST00000635450 H0YIN7 160 aa20.46■□□□□ 0.87
LINC00339-209ENST00000635450 NPM2Q86SE8 214 aaKnown RBP20.46■□□□□ 0.87
LINC00339-209ENST00000635450 TTLL6Q8N841 843 aa20.46■□□□□ 0.87
LINC00339-209ENST00000635450 RUNDC1Q96C34 613 aa20.46■□□□□ 0.87
LINC00339-209ENST00000635450 RRP7AQ9Y3A4 280 aaKnown RBP20.46■□□□□ 0.87
LINC00339-209ENST00000635450 NFKBIEO00221 500 aa20.45■□□□□ 0.86
LINC00339-209ENST00000635450 HLFQ16534 295 aa20.45■□□□□ 0.86
LINC00339-209ENST00000635450 BRIP1Q9BX63 1249 aa20.45■□□□□ 0.86
LINC00339-209ENST00000635450 RIPK4P57078 832 aa20.44■□□□□ 0.86
LINC00339-209ENST00000635450 ZNF622Q969S3 477 aaKnown RBP eCLIP20.44■□□□□ 0.86
LINC00339-209ENST00000635450 ZNF219Q9P2Y4 722 aaPredicted RBP20.44■□□□□ 0.86
LINC00339-209ENST00000635450 TMPOP42166 694 aaKnown RBP20.43■□□□□ 0.86
LINC00339-209ENST00000635450 LMOD3Q0VAK6 560 aa20.43■□□□□ 0.86
LINC00339-209ENST00000635450 NGEFQ8N5V2 710 aa20.43■□□□□ 0.86
LINC00339-209ENST00000635450 PNISRQ8TF01 805 aaKnown RBP20.43■□□□□ 0.86
LINC00339-209ENST00000635450 ANKRD36CQ5JPF3 1778 aa20.42■□□□□ 0.86
LINC00339-209ENST00000635450 FAM177BA6PVY3 158 aa20.42■□□□□ 0.86
LINC00339-209ENST00000635450 TTLL7Q6ZT98 887 aa20.42■□□□□ 0.86
LINC00339-209ENST00000635450 NIP7Q9Y221 180 aaKnown RBP eCLIP20.42■□□□□ 0.86
LINC00339-209ENST00000635450 PDE6BP35913 854 aa20.41■□□□□ 0.86
LINC00339-209ENST00000635450 NEUROD2Q15784 382 aa20.41■□□□□ 0.86
LINC00339-209ENST00000635450 CLEC4GQ6UXB4 293 aa20.41■□□□□ 0.86
LINC00339-209ENST00000635450 NBPF5PQ86XG9 351 aaPredicted RBP20.41■□□□□ 0.86
LINC00339-209ENST00000635450 TSPYL4Q9UJ04 414 aa20.41■□□□□ 0.86
LINC00339-209ENST00000635450 ABCC12Q96J65 1359 aa20.41■□□□□ 0.86
LINC00339-209ENST00000635450 NPHP1O15259 732 aa20.4■□□□□ 0.86
LINC00339-209ENST00000635450 C21orf2O43822 256 aa20.4■□□□□ 0.86
LINC00339-209ENST00000635450 MYL6BP14649 208 aa20.4■□□□□ 0.86
LINC00339-209ENST00000635450 ST5P78524 1137 aa20.4■□□□□ 0.86
LINC00339-209ENST00000635450 MRS2Q9HD23 443 aa20.4■□□□□ 0.86
LINC00339-209ENST00000635450 ZNF652Q9Y2D9 606 aa20.4■□□□□ 0.86
LINC00339-209ENST00000635450 SRGNP10124 158 aa20.39■□□□□ 0.85
LINC00339-209ENST00000635450 CCDC184Q52MB2 194 aa20.39■□□□□ 0.85
LINC00339-209ENST00000635450 ANXA1P04083 346 aa20.38■□□□□ 0.85
LINC00339-209ENST00000635450 LMNB1P20700 586 aa20.38■□□□□ 0.85
LINC00339-209ENST00000635450 KRT24Q2M2I5 525 aa20.38■□□□□ 0.85
LINC00339-209ENST00000635450 PROSER3Q2NL68 480 aa20.38■□□□□ 0.85
LINC00339-209ENST00000635450 PRPF40BQ6NWY9 871 aaKnown RBP20.38■□□□□ 0.85
LINC00339-209ENST00000635450 MAP3K15Q6ZN16 1313 aa20.37■□□□□ 0.85
LINC00339-209ENST00000635450 UBN2Q6ZU65 1347 aa20.37■□□□□ 0.85
LINC00339-209ENST00000635450 WDR90Q96KV7 1748 aa20.37■□□□□ 0.85
LINC00339-209ENST00000635450 HSPA6P17066 643 aa20.37■□□□□ 0.85
LINC00339-209ENST00000635450 LRP10Q7Z4F1 713 aa20.37■□□□□ 0.85
LINC00339-209ENST00000635450 ZBTB3Q9H5J0 574 aa20.37■□□□□ 0.85
LINC00339-209ENST00000635450 TRIM35Q9UPQ4 493 aa20.37■□□□□ 0.85
LINC00339-209ENST00000635450 LAMB2P55268 1798 aa20.36■□□□□ 0.85
LINC00339-209ENST00000635450 STYK1Q6J9G0 422 aa20.36■□□□□ 0.85
LINC00339-209ENST00000635450 OLFM4Q6UX06 510 aa20.36■□□□□ 0.85
LINC00339-209ENST00000635450 RGL2O15211 777 aa20.35■□□□□ 0.85
LINC00339-209ENST00000635450 GPTP24298 496 aa20.35■□□□□ 0.85
LINC00339-209ENST00000635450 PDIA6Q15084 440 aa20.35■□□□□ 0.85
LINC00339-209ENST00000635450 NUTM1Q86Y26 1132 aa20.35■□□□□ 0.85
LINC00339-209ENST00000635450 MASTLQ96GX5 879 aa20.35■□□□□ 0.85
LINC00339-209ENST00000635450 PDZRN3Q9UPQ7 1066 aa20.35■□□□□ 0.85
LINC00339-209ENST00000635450 EIF2S2P20042 333 aaKnown RBP20.34■□□□□ 0.85
LINC00339-209ENST00000635450 SLC51AQ86UW1 340 aa20.34■□□□□ 0.85
LINC00339-209ENST00000635450 NECTIN2Q92692 538 aa20.34■□□□□ 0.85
LINC00339-209ENST00000635450 RRAGCQ9HB90 399 aa20.34■□□□□ 0.85
LINC00339-209ENST00000635450 KDM2BQ8NHM5 1336 aa20.33■□□□□ 0.85
LINC00339-209ENST00000635450 KLRG2A4D1S0 409 aaPredicted RBP20.33■□□□□ 0.85
LINC00339-209ENST00000635450 APAF1O14727 1248 aa20.33■□□□□ 0.85
LINC00339-209ENST00000635450 TOMM70O94826 608 aa20.33■□□□□ 0.85
LINC00339-209ENST00000635450 KIF6Q6ZMV9 814 aa20.33■□□□□ 0.85
LINC00339-209ENST00000635450 CNKSR1Q969H4 720 aa20.33■□□□□ 0.85
LINC00339-209ENST00000635450 ZC3H4Q9UPT8 1303 aaKnown RBP20.32■□□□□ 0.84
LINC00339-209ENST00000635450 ERVV-1B6SEH8 477 aa20.32■□□□□ 0.84
LINC00339-209ENST00000635450 ERFEQ4G0M1 354 aa20.32■□□□□ 0.84
LINC00339-209ENST00000635450 ERBB4Q15303 1308 aa20.31■□□□□ 0.84
LINC00339-209ENST00000635450 SNED1Q8TER0 1413 aa20.31■□□□□ 0.84
LINC00339-209ENST00000635450 TPTE2Q6XPS3 522 aa20.31■□□□□ 0.84
LINC00339-209ENST00000635450 C7orf43Q8WVR3 580 aa20.31■□□□□ 0.84
LINC00339-209ENST00000635450 TAOK3Q9H2K8 898 aa20.31■□□□□ 0.84
LINC00339-209ENST00000635450 BABAM1Q9NWV8 329 aa20.31■□□□□ 0.84
LINC00339-209ENST00000635450 NPR1P16066 1061 aa20.3■□□□□ 0.84
LINC00339-209ENST00000635450 C3orf67Q6ZVT6 689 aa20.3■□□□□ 0.84
LINC00339-209ENST00000635450 LAS1LQ9Y4W2 734 aaKnown RBP20.3■□□□□ 0.84
LINC00339-209ENST00000635450 IBTKQ9P2D0 1353 aaPredicted RBP20.3■□□□□ 0.84
LINC00339-209ENST00000635450 LTBP3Q9NS15 1303 aa20.29■□□□□ 0.84
LINC00339-209ENST00000635450 RIC1Q4ADV7 1423 aa20.29■□□□□ 0.84
LINC00339-209ENST00000635450 CHL1O00533 1208 aa20.29■□□□□ 0.84
LINC00339-209ENST00000635450 SUSD4Q5VX71 490 aa20.29■□□□□ 0.84
LINC00339-209ENST00000635450 ZNF34Q8IZ26 560 aa20.29■□□□□ 0.84
LINC00339-209ENST00000635450 TAF1P21675 1872 aa20.28■□□□□ 0.84
LINC00339-209ENST00000635450 GLTPD2A6NH11 291 aa20.28■□□□□ 0.84
LINC00339-209ENST00000635450 NTSR2O95665 410 aa20.28■□□□□ 0.84
LINC00339-209ENST00000635450 RBM46Q8TBY0 533 aaKnown RBP20.28■□□□□ 0.84
LINC00339-209ENST00000635450 COL4A5P29400 1685 aa20.28■□□□□ 0.84
LINC00339-209ENST00000635450 DDX60Q8IY21 1712 aaKnown RBP20.27■□□□□ 0.84
LINC00339-209ENST00000635450 GIGYF2Q6Y7W6 1299 aaKnown RBP20.27■□□□□ 0.84
LINC00339-209ENST00000635450 POTECB2RU33 542 aa20.26■□□□□ 0.83
LINC00339-209ENST00000635450 GTF2E1P29083 439 aaPredicted RBP20.26■□□□□ 0.83
LINC00339-209ENST00000635450 HTRA3P83110 453 aa20.26■□□□□ 0.83
LINC00339-209ENST00000635450 CALD1Q05682 793 aaKnown RBP20.26■□□□□ 0.83
LINC00339-209ENST00000635450 CRY2Q49AN0 593 aa20.26■□□□□ 0.83
LINC00339-209ENST00000635450 XAGE3Q8WTP9 111 aa20.26■□□□□ 0.83
LINC00339-209ENST00000635450 CCDC93Q567U6 631 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms