RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	MBIP	Q9NS73	344 aa		5.97	□□□□□ -1.45
CNOT1-223	ENST00000628857	LRRC4B	Q9NT99	713 aa		5.97	□□□□□ -1.45
CNOT1-223	ENST00000628857	CXXC1	Q9P0U4	656 aa	Predicted RBP	5.97	□□□□□ -1.45
CNOT1-223	ENST00000628857	PARP3	Q9Y6F1	533 aa		5.97	□□□□□ -1.45
CNOT1-223	ENST00000628857	SLURP2	P0DP57	97 aa		5.96	□□□□□ -1.46
CNOT1-223	ENST00000628857	VTI1A	Q96AJ9	217 aa		5.96	□□□□□ -1.46
CNOT1-223	ENST00000628857	NEUROD4	Q9HD90	331 aa		5.96	□□□□□ -1.46
CNOT1-223	ENST00000628857	NSFL1C	Q9UNZ2	370 aa	Known RBP	5.96	□□□□□ -1.46
CNOT1-223	ENST00000628857	HCN4	Q9Y3Q4	1203 aa		5.96	□□□□□ -1.46
CNOT1-223	ENST00000628857	ATXN7	O15265	892 aa	Predicted RBP	5.95	□□□□□ -1.46
CNOT1-223	ENST00000628857	KCNQ4	P56696	695 aa		5.95	□□□□□ -1.46
CNOT1-223	ENST00000628857	TNP2	Q05952	138 aa		5.95	□□□□□ -1.46
CNOT1-223	ENST00000628857	GAS6	Q14393	721 aa		5.95	□□□□□ -1.46
CNOT1-223	ENST00000628857	SH3PXD2A	Q5TCZ1	1133 aa		5.95	□□□□□ -1.46
CNOT1-223	ENST00000628857	RHPN1	Q8TCX5	695 aa		5.95	□□□□□ -1.46
CNOT1-223	ENST00000628857	CHMP7	Q8WUX9	453 aa	Predicted RBP	5.95	□□□□□ -1.46
CNOT1-223	ENST00000628857	GJA3	Q9Y6H8	435 aa		5.95	□□□□□ -1.46
CNOT1-223	ENST00000628857	EFS	O43281	561 aa		5.94	□□□□□ -1.46
CNOT1-223	ENST00000628857	BNIP3L	O60238	219 aa		5.94	□□□□□ -1.46
CNOT1-223	ENST00000628857	SSFA2	P28290	1259 aa		5.94	□□□□□ -1.46
CNOT1-223	ENST00000628857	MAP2K3	P46734	347 aa		5.94	□□□□□ -1.46
CNOT1-223	ENST00000628857	KRT76	Q01546	638 aa		5.94	□□□□□ -1.46
CNOT1-223	ENST00000628857	FKBP5	Q13451	457 aa	Predicted RBP	5.94	□□□□□ -1.46
CNOT1-223	ENST00000628857	C11orf91	Q3C1V1	193 aa		5.94	□□□□□ -1.46
CNOT1-223	ENST00000628857	SUSD3	Q96L08	255 aa		5.94	□□□□□ -1.46
CNOT1-223	ENST00000628857	EFCC1	Q9HA90	598 aa		5.94	□□□□□ -1.46
CNOT1-223	ENST00000628857	AVEN	Q9NQS1	362 aa	Predicted RBP	5.94	□□□□□ -1.46
CNOT1-223	ENST00000628857	PRMT3	O60678	531 aa		5.93	□□□□□ -1.46
CNOT1-223	ENST00000628857	MX2	P20592	715 aa		5.93	□□□□□ -1.46
CNOT1-223	ENST00000628857	ATP2B4	P23634	1241 aa		5.93	□□□□□ -1.46
CNOT1-223	ENST00000628857	RNFT1	Q5M7Z0	435 aa		5.93	□□□□□ -1.46
CNOT1-223	ENST00000628857	B4GALNT3	Q6L9W6	998 aa		5.93	□□□□□ -1.46
CNOT1-223	ENST00000628857	PRIMPOL	Q96LW4	560 aa		5.93	□□□□□ -1.46
CNOT1-223	ENST00000628857	CNTNAP3B	Q96NU0	1288 aa		5.93	□□□□□ -1.46
CNOT1-223	ENST00000628857	CNTNAP3	Q9BZ76	1288 aa		5.93	□□□□□ -1.46
CNOT1-223	ENST00000628857	QTRT2	Q9H974	415 aa	Known RBP	5.93	□□□□□ -1.46
CNOT1-223	ENST00000628857	TGFBR3L	H3BV60	316 aa		5.92	□□□□□ -1.46
CNOT1-223	ENST00000628857	MAPT	P10636	758 aa	Known RBP	5.92	□□□□□ -1.46
CNOT1-223	ENST00000628857	FGFR3	P22607	806 aa		5.92	□□□□□ -1.46
CNOT1-223	ENST00000628857	MARK1	Q9P0L2	795 aa		5.92	□□□□□ -1.46
CNOT1-223	ENST00000628857	SLAIN2	Q9P270	581 aa		5.92	□□□□□ -1.46
CNOT1-223	ENST00000628857	DMGDH	Q9UI17	866 aa	Known RBP	5.92	□□□□□ -1.46
CNOT1-223	ENST00000628857	GPR25	O00155	361 aa		5.91	□□□□□ -1.46
CNOT1-223	ENST00000628857	LOR	P23490	312 aa	Predicted RBP	5.91	□□□□□ -1.46
CNOT1-223	ENST00000628857	C16orf46	Q6P387	395 aa		5.91	□□□□□ -1.46
CNOT1-223	ENST00000628857	LRRC69	Q6ZNQ3	347 aa		5.91	□□□□□ -1.46
CNOT1-223	ENST00000628857	ZSCAN1	Q8NBB4	408 aa		5.91	□□□□□ -1.46
CNOT1-223	ENST00000628857	ARID3A	Q99856	593 aa		5.91	□□□□□ -1.46
CNOT1-223	ENST00000628857	GDF2	Q9UK05	429 aa	Predicted RBP	5.91	□□□□□ -1.46
CNOT1-223	ENST00000628857	MTMR7	Q9Y216	660 aa		5.91	□□□□□ -1.46
CNOT1-223	ENST00000628857	IGF1R	P08069	1367 aa		5.91	□□□□□ -1.46
CNOT1-223	ENST00000628857	FAM181B	A6NEQ2	426 aa		5.9	□□□□□ -1.46
CNOT1-223	ENST00000628857	ADAMTS2	O95450	1211 aa		5.9	□□□□□ -1.46
CNOT1-223	ENST00000628857	ARAF	P10398	606 aa		5.9	□□□□□ -1.46
CNOT1-223	ENST00000628857	BRD2	P25440	801 aa	Known RBP	5.9	□□□□□ -1.46
CNOT1-223	ENST00000628857	TYRO3	Q06418	890 aa		5.9	□□□□□ -1.46
CNOT1-223	ENST00000628857	COX20	Q5RI15	118 aa		5.9	□□□□□ -1.46
CNOT1-223	ENST00000628857	BTLA	Q7Z6A9	289 aa		5.9	□□□□□ -1.46
CNOT1-223	ENST00000628857	ABHD17A	Q96GS6	310 aa		5.9	□□□□□ -1.46
CNOT1-223	ENST00000628857	KHNYN	O15037	678 aa	Known RBP	5.89	□□□□□ -1.47
CNOT1-223	ENST00000628857	LGR5	O75473	907 aa		5.89	□□□□□ -1.47
CNOT1-223	ENST00000628857	EPB42	P16452	691 aa		5.89	□□□□□ -1.47
CNOT1-223	ENST00000628857	ZNF280C	Q8ND82	737 aa		5.89	□□□□□ -1.47
CNOT1-223	ENST00000628857	KLRG1	Q96E93	195 aa		5.89	□□□□□ -1.47
CNOT1-223	ENST00000628857	NGLY1	Q96IV0	654 aa		5.89	□□□□□ -1.47
CNOT1-223	ENST00000628857	CEP63	Q96MT8	703 aa		5.89	□□□□□ -1.47
CNOT1-223	ENST00000628857	STK17A	Q9UEE5	414 aa		5.89	□□□□□ -1.47
CNOT1-223	ENST00000628857	LRFN2	Q9ULH4	789 aa		5.89	□□□□□ -1.47
CNOT1-223	ENST00000628857	BCS1L	Q9Y276	419 aa		5.89	□□□□□ -1.47
CNOT1-223	ENST00000628857	C2CD2L	O14523	706 aa		5.88	□□□□□ -1.47
CNOT1-223	ENST00000628857	BMP4	P12644	408 aa		5.88	□□□□□ -1.47
CNOT1-223	ENST00000628857	INPP5B	P32019	993 aa		5.88	□□□□□ -1.47
CNOT1-223	ENST00000628857	CTBS	Q01459	385 aa		5.88	□□□□□ -1.47
CNOT1-223	ENST00000628857	DGKZ	Q13574	1117 aa		5.88	□□□□□ -1.47
CNOT1-223	ENST00000628857	PHLDB3	Q6NSJ2	640 aa		5.88	□□□□□ -1.47
CNOT1-223	ENST00000628857	GOLGA6L1	Q8N7Z2	621 aa		5.88	□□□□□ -1.47
CNOT1-223	ENST00000628857	IFT43	Q96FT9	208 aa		5.88	□□□□□ -1.47
CNOT1-223	ENST00000628857	BRD7	Q9NPI1	651 aa		5.88	□□□□□ -1.47
CNOT1-223	ENST00000628857	HCN2	Q9UL51	889 aa		5.88	□□□□□ -1.47
CNOT1-223	ENST00000628857	KCNH4	Q9UQ05	1017 aa		5.88	□□□□□ -1.47
CNOT1-223	ENST00000628857	DCDC2B	A2VCK2	349 aa		5.87	□□□□□ -1.47
CNOT1-223	ENST00000628857	MICAL2	O94851	1124 aa		5.87	□□□□□ -1.47
CNOT1-223	ENST00000628857	NEUROD1	Q13562	356 aa		5.87	□□□□□ -1.47
CNOT1-223	ENST00000628857	RETREG2	Q8NC44	543 aa		5.87	□□□□□ -1.47
CNOT1-223	ENST00000628857	HSH2D	Q96JZ2	352 aa		5.87	□□□□□ -1.47
CNOT1-223	ENST00000628857	OXCT2	Q9BYC2	517 aa	Predicted RBP	5.87	□□□□□ -1.47
CNOT1-223	ENST00000628857	ENAM	Q9NRM1	1142 aa		5.87	□□□□□ -1.47
CNOT1-223	ENST00000628857	FAM13B	Q9NYF5	915 aa		5.87	□□□□□ -1.47
CNOT1-223	ENST00000628857	STIM2	Q9P246	746 aa		5.87	□□□□□ -1.47
CNOT1-223	ENST00000628857	OIP5	O43482	229 aa		5.86	□□□□□ -1.47
CNOT1-223	ENST00000628857	SIN3B	O75182	1162 aa		5.86	□□□□□ -1.47
CNOT1-223	ENST00000628857	ARHGEF15	O94989	841 aa		5.86	□□□□□ -1.47
CNOT1-223	ENST00000628857	EGFR	P00533	1210 aa		5.86	□□□□□ -1.47
CNOT1-223	ENST00000628857	CELA2B	P08218	269 aa	Predicted RBP	5.86	□□□□□ -1.47
CNOT1-223	ENST00000628857	BCR	P11274	1271 aa		5.86	□□□□□ -1.47
CNOT1-223	ENST00000628857	NPR3	P17342	541 aa		5.86	□□□□□ -1.47
CNOT1-223	ENST00000628857	ARID4A	P29374	1257 aa	Predicted RBP	5.86	□□□□□ -1.47
CNOT1-223	ENST00000628857	ARSD	P51689	593 aa		5.86	□□□□□ -1.47
CNOT1-223	ENST00000628857	SFSWAP	Q12872	951 aa	Known RBP	5.86	□□□□□ -1.47
CNOT1-223	ENST00000628857	ZNF468	Q5VIY5	522 aa	Predicted RBP	5.86	□□□□□ -1.47

Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms