RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 CENPBP07199 599 aaPredicted RBP16.47■□□□□ 0.23
PNKP-217ENST00000625216 ST5P78524 1137 aa16.47■□□□□ 0.23
PNKP-217ENST00000625216 NEUROD2Q15784 382 aa16.47■□□□□ 0.23
PNKP-217ENST00000625216 RRP7AQ9Y3A4 280 aaKnown RBP16.47■□□□□ 0.23
PNKP-217ENST00000625216 NRXN2Q9P2S2 1712 aa16.46■□□□□ 0.23
PNKP-217ENST00000625216 C1QTNF8P60827 252 aa16.46■□□□□ 0.23
PNKP-217ENST00000625216 TPTE2Q6XPS3 522 aa16.46■□□□□ 0.23
PNKP-217ENST00000625216 TRIM35Q9UPQ4 493 aa16.46■□□□□ 0.23
PNKP-217ENST00000625216 DLG5Q8TDM6 1919 aa16.45■□□□□ 0.22
PNKP-217ENST00000625216 CHL1O00533 1208 aa16.45■□□□□ 0.22
PNKP-217ENST00000625216 NBPF5PQ86XG9 351 aaPredicted RBP16.45■□□□□ 0.22
PNKP-217ENST00000625216 NIP7Q9Y221 180 aaKnown RBP eCLIP16.45■□□□□ 0.22
PNKP-217ENST00000625216 SCN7AQ01118 1682 aa16.44■□□□□ 0.22
PNKP-217ENST00000625216 KIF6Q6ZMV9 814 aa16.44■□□□□ 0.22
PNKP-217ENST00000625216 MAP3K15Q6ZN16 1313 aa16.44■□□□□ 0.22
PNKP-217ENST00000625216 MYL6BP14649 208 aa16.43■□□□□ 0.22
PNKP-217ENST00000625216 HLFQ16534 295 aa16.43■□□□□ 0.22
PNKP-217ENST00000625216 C9orf131Q5VYM1 1079 aa16.43■□□□□ 0.22
PNKP-217ENST00000625216 NGEFQ8N5V2 710 aa16.43■□□□□ 0.22
PNKP-217ENST00000625216 ZNF622Q969S3 477 aaKnown RBP eCLIP16.43■□□□□ 0.22
PNKP-217ENST00000625216 KDM3BQ7LBC6 1761 aa16.43■□□□□ 0.22
PNKP-217ENST00000625216 EIF2S2P20042 333 aaKnown RBP16.42■□□□□ 0.22
PNKP-217ENST00000625216 STYK1Q6J9G0 422 aa16.42■□□□□ 0.22
PNKP-217ENST00000625216 CCDC24Q8N4L8 307 aa16.42■□□□□ 0.22
PNKP-217ENST00000625216 CNKSR1Q969H4 720 aa16.42■□□□□ 0.22
PNKP-217ENST00000625216 AFDNP55196 1824 aaKnown RBP16.42■□□□□ 0.22
PNKP-217ENST00000625216 KLRG2A4D1S0 409 aaPredicted RBP16.41■□□□□ 0.22
PNKP-217ENST00000625216 SRGNP10124 158 aa16.41■□□□□ 0.22
PNKP-217ENST00000625216 CALD1Q05682 793 aaKnown RBP16.41■□□□□ 0.22
PNKP-217ENST00000625216 TTLL7Q6ZT98 887 aa16.41■□□□□ 0.22
PNKP-217ENST00000625216 ZNF526Q8TF50 670 aaPredicted RBP16.41■□□□□ 0.22
PNKP-217ENST00000625216 MASTLQ96GX5 879 aa16.41■□□□□ 0.22
PNKP-217ENST00000625216 CFAP44Q96MT7 982 aa16.41■□□□□ 0.22
PNKP-217ENST00000625216 NYXQ9GZU5 481 aa16.41■□□□□ 0.22
PNKP-217ENST00000625216 BRCA1P38398 1863 aaKnown RBP16.41■□□□□ 0.22
PNKP-217ENST00000625216 APAF1O14727 1248 aa16.4■□□□□ 0.22
PNKP-217ENST00000625216 GTF2E1P29083 439 aaPredicted RBP16.4■□□□□ 0.22
PNKP-217ENST00000625216 PDIA6Q15084 440 aa16.4■□□□□ 0.22
PNKP-217ENST00000625216 RNF181Q9P0P0 153 aa16.4■□□□□ 0.22
PNKP-217ENST00000625216 LAS1LQ9Y4W2 734 aaKnown RBP16.4■□□□□ 0.22
PNKP-217ENST00000625216 HOXB7P09629 217 aa16.39■□□□□ 0.21
PNKP-217ENST00000625216 LMNB1P20700 586 aa16.39■□□□□ 0.21
PNKP-217ENST00000625216 GIGYF2Q6Y7W6 1299 aaKnown RBP16.39■□□□□ 0.21
PNKP-217ENST00000625216 LRP10Q7Z4F1 713 aa16.39■□□□□ 0.21
PNKP-217ENST00000625216 SALL2Q9Y467 1007 aaPredicted RBP16.39■□□□□ 0.21
PNKP-217ENST00000625216 ARFGEF1Q9Y6D6 1849 aa16.39■□□□□ 0.21
PNKP-217ENST00000625216 ZC3H4Q9UPT8 1303 aaKnown RBP16.39■□□□□ 0.21
PNKP-217ENST00000625216 NPR1P16066 1061 aa16.38■□□□□ 0.21
PNKP-217ENST00000625216 SOGA3Q5TF21 947 aa16.38■□□□□ 0.21
PNKP-217ENST00000625216 ZBTB3Q9H5J0 574 aa16.38■□□□□ 0.21
PNKP-217ENST00000625216 DDX21Q9NR30 783 aaKnown RBP eCLIP16.38■□□□□ 0.21
PNKP-217ENST00000625216 BCORQ6W2J9 1755 aa16.38■□□□□ 0.21
PNKP-217ENST00000625216 LAMB4A4D0S4 1761 aa16.37■□□□□ 0.21
PNKP-217ENST00000625216 FAM177BA6PVY3 158 aa16.37■□□□□ 0.21
PNKP-217ENST00000625216 C21orf2O43822 256 aa16.37■□□□□ 0.21
PNKP-217ENST00000625216 PARP10Q53GL7 1025 aa16.37■□□□□ 0.21
PNKP-217ENST00000625216 ZNF34Q8IZ26 560 aa16.37■□□□□ 0.21
PNKP-217ENST00000625216 IFT57Q9NWB7 429 aa16.37■□□□□ 0.21
PNKP-217ENST00000625216 ZNF521Q96K83 1311 aa16.37■□□□□ 0.21
PNKP-217ENST00000625216 ZNF853P0CG23 659 aa16.36■□□□□ 0.21
PNKP-217ENST00000625216 ALDH1B1P30837 517 aa16.36■□□□□ 0.21
PNKP-217ENST00000625216 GNAI1P63096 354 aa16.36■□□□□ 0.21
PNKP-217ENST00000625216 KDM2BQ8NHM5 1336 aa16.36■□□□□ 0.21
PNKP-217ENST00000625216 IBTKQ9P2D0 1353 aaPredicted RBP16.36■□□□□ 0.21
PNKP-217ENST00000625216 NFKBIEO00221 500 aa16.35■□□□□ 0.21
PNKP-217ENST00000625216 KIF3CO14782 793 aa16.35■□□□□ 0.21
PNKP-217ENST00000625216 RASSF7Q02833 373 aa16.35■□□□□ 0.21
PNKP-217ENST00000625216 PROSER3Q2NL68 480 aa16.35■□□□□ 0.21
PNKP-217ENST00000625216 HSP90AB3PQ58FF7 597 aa16.35■□□□□ 0.21
PNKP-217ENST00000625216 PRPF40BQ6NWY9 871 aaKnown RBP16.35■□□□□ 0.21
PNKP-217ENST00000625216 COPS6Q7L5N1 327 aa16.35■□□□□ 0.21
PNKP-217ENST00000625216 PPP1R42Q7Z4L9 355 aa16.35■□□□□ 0.21
PNKP-217ENST00000625216 CHMP4AQ9BY43 222 aa16.35■□□□□ 0.21
PNKP-217ENST00000625216 GPTP24298 496 aa16.34■□□□□ 0.21
PNKP-217ENST00000625216 KRT24Q2M2I5 525 aa16.34■□□□□ 0.21
PNKP-217ENST00000625216 NCBP3Q53F19 620 aaKnown RBP16.34■□□□□ 0.21
PNKP-217ENST00000625216 HDGFL1Q5TGJ6 251 aa16.34■□□□□ 0.21
PNKP-217ENST00000625216 SUSD4Q5VX71 490 aa16.34■□□□□ 0.21
PNKP-217ENST00000625216 C7orf43Q8WVR3 580 aa16.34■□□□□ 0.21
PNKP-217ENST00000625216 NECTIN2Q92692 538 aa16.34■□□□□ 0.21
PNKP-217ENST00000625216 MBIPQ9NS73 344 aa16.34■□□□□ 0.21
PNKP-217ENST00000625216 DBF4Q9UBU7 674 aaPredicted RBP16.34■□□□□ 0.21
PNKP-217ENST00000625216 LTBP3Q9NS15 1303 aa16.34■□□□□ 0.21
PNKP-217ENST00000625216 ANXA1P04083 346 aa16.33■□□□□ 0.2
PNKP-217ENST00000625216 CRY2Q49AN0 593 aa16.33■□□□□ 0.2
PNKP-217ENST00000625216 DUSP27Q5VZP5 1158 aa16.33■□□□□ 0.2
PNKP-217ENST00000625216 XAGE3Q8WTP9 111 aa16.33■□□□□ 0.2
PNKP-217ENST00000625216 ZNF219Q9P2Y4 722 aaPredicted RBP16.33■□□□□ 0.2
PNKP-217ENST00000625216 UBN2Q6ZU65 1347 aa16.33■□□□□ 0.2
PNKP-217ENST00000625216 DLEC1Q9Y238 1755 aa16.33■□□□□ 0.2
PNKP-217ENST00000625216 TOMM70O94826 608 aa16.32■□□□□ 0.2
PNKP-217ENST00000625216 AIMP1Q12904 312 aaKnown RBP16.32■□□□□ 0.2
PNKP-217ENST00000625216 CCDC27Q2M243 656 aa16.32■□□□□ 0.2
PNKP-217ENST00000625216 ERFEQ4G0M1 354 aa16.32■□□□□ 0.2
PNKP-217ENST00000625216 RNF123Q5XPI4 1314 aa16.32■□□□□ 0.2
PNKP-217ENST00000625216 NUTM1Q86Y26 1132 aa16.32■□□□□ 0.2
PNKP-217ENST00000625216 ANKRD31Q8N7Z5 1873 aa16.32■□□□□ 0.2
PNKP-217ENST00000625216 TAOK3Q9H2K8 898 aa16.32■□□□□ 0.2
PNKP-217ENST00000625216 HYPKQ9NX55 129 aa16.32■□□□□ 0.2
PNKP-217ENST00000625216 RIC1Q4ADV7 1423 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms