RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 USP16Q9Y5T5 823 aa15.31■□□□□ 0.04
CPNE3-210ENST00000621245 CAMTA2O94983 1202 aa15.3■□□□□ 0.04
CPNE3-210ENST00000621245 NUP98P52948 1817 aa15.29■□□□□ 0.04
CPNE3-210ENST00000621245 WDR90Q96KV7 1748 aa15.29■□□□□ 0.04
CPNE3-210ENST00000621245 IL6STP40189 918 aaPredicted RBP15.28■□□□□ 0.04
CPNE3-210ENST00000621245 PRR5LQ6MZQ0 368 aa15.28■□□□□ 0.04
CPNE3-210ENST00000621245 C2CD5Q86YS7 1000 aa15.28■□□□□ 0.04
CPNE3-210ENST00000621245 MIS18AQ9NYP9 233 aa15.28■□□□□ 0.04
CPNE3-210ENST00000621245 RNF181Q9P0P0 153 aa15.28■□□□□ 0.04
CPNE3-210ENST00000621245 NUDCQ9Y266 331 aa15.28■□□□□ 0.04
CPNE3-210ENST00000621245 NBPF26B4DH59 902 aa15.27■□□□□ 0.04
CPNE3-210ENST00000621245 HSPA6P17066 643 aa15.27■□□□□ 0.04
CPNE3-210ENST00000621245 NBPF10Q6P3W6 841 aaKnown RBP15.27■□□□□ 0.04
CPNE3-210ENST00000621245 NBPF15Q8N660 670 aa15.27■□□□□ 0.04
CPNE3-210ENST00000621245 A0A087WZG4 1122 aa15.26■□□□□ 0.03
CPNE3-210ENST00000621245 NFKBIEO00221 500 aa15.26■□□□□ 0.03
CPNE3-210ENST00000621245 DSG3P32926 999 aa15.26■□□□□ 0.03
CPNE3-210ENST00000621245 THUMPD2Q9BTF0 503 aaKnown RBP15.26■□□□□ 0.03
CPNE3-210ENST00000621245 DZIP3Q86Y13 1208 aaKnown RBP15.25■□□□□ 0.03
CPNE3-210ENST00000621245 RTF1Q92541 710 aaKnown RBP15.25■□□□□ 0.03
CPNE3-210ENST00000621245 PLEKHF1Q96S99 279 aa15.25■□□□□ 0.03
CPNE3-210ENST00000621245 TEX13AQ9BXU3 409 aaPredicted RBP15.25■□□□□ 0.03
CPNE3-210ENST00000621245 TTLL6Q8N841 843 aa15.23■□□□□ 0.03
CPNE3-210ENST00000621245 H0YIN7 160 aa15.22■□□□□ 0.03
CPNE3-210ENST00000621245 SNRPA1P09661 255 aaKnown RBP15.22■□□□□ 0.03
CPNE3-210ENST00000621245 SPOCK2Q92563 424 aa15.22■□□□□ 0.03
CPNE3-210ENST00000621245 ZNF622Q969S3 477 aaKnown RBP eCLIP15.22■□□□□ 0.03
CPNE3-210ENST00000621245 HTATSF1O43719 755 aaKnown RBP15.21■□□□□ 0.03
CPNE3-210ENST00000621245 TOMM70O94826 608 aa15.21■□□□□ 0.03
CPNE3-210ENST00000621245 HTRA3P83110 453 aa15.21■□□□□ 0.03
CPNE3-210ENST00000621245 TAF7Q15545 349 aaPredicted RBP15.21■□□□□ 0.03
CPNE3-210ENST00000621245 CNBD1Q8NA66 436 aa15.21■□□□□ 0.03
CPNE3-210ENST00000621245 BRIP1Q9BX63 1249 aa15.21■□□□□ 0.03
CPNE3-210ENST00000621245 RRAGCQ9HB90 399 aa15.21■□□□□ 0.03
CPNE3-210ENST00000621245 C21orf2O43822 256 aa15.2■□□□□ 0.02
CPNE3-210ENST00000621245 NFE2L2Q16236 605 aa15.2■□□□□ 0.02
CPNE3-210ENST00000621245 HLFQ16534 295 aa15.2■□□□□ 0.02
CPNE3-210ENST00000621245 SETDB2Q96T68 719 aa15.2■□□□□ 0.02
CPNE3-210ENST00000621245 SSUH2Q9Y2M2 353 aa15.2■□□□□ 0.02
CPNE3-210ENST00000621245 ANKRD36CQ5JPF3 1778 aa15.19■□□□□ 0.02
CPNE3-210ENST00000621245 LMNB1P20700 586 aa15.19■□□□□ 0.02
CPNE3-210ENST00000621245 ABCC12Q96J65 1359 aa15.19■□□□□ 0.02
CPNE3-210ENST00000621245 LAMB2P55268 1798 aa15.19■□□□□ 0.02
CPNE3-210ENST00000621245 SPDYE2BA6NHP3 402 aa15.18■□□□□ 0.02
CPNE3-210ENST00000621245 FAM177BA6PVY3 158 aa15.18■□□□□ 0.02
CPNE3-210ENST00000621245 SPDYE6P0CI01 402 aa15.18■□□□□ 0.02
CPNE3-210ENST00000621245 PDE6BP35913 854 aa15.18■□□□□ 0.02
CPNE3-210ENST00000621245 SPDYE2Q495Y8 402 aa15.18■□□□□ 0.02
CPNE3-210ENST00000621245 SLC51AQ86UW1 340 aa15.18■□□□□ 0.02
CPNE3-210ENST00000621245 SRGNP10124 158 aa15.17■□□□□ 0.02
CPNE3-210ENST00000621245 EIF4A1P60842 406 aaKnown RBP15.17■□□□□ 0.02
CPNE3-210ENST00000621245 PRPF40BQ6NWY9 871 aaKnown RBP15.17■□□□□ 0.02
CPNE3-210ENST00000621245 OLFM4Q6UX06 510 aa15.17■□□□□ 0.02
CPNE3-210ENST00000621245 TTLL7Q6ZT98 887 aa15.17■□□□□ 0.02
CPNE3-210ENST00000621245 NGEFQ8N5V2 710 aa15.17■□□□□ 0.02
CPNE3-210ENST00000621245 KDM2BQ8NHM5 1336 aa15.17■□□□□ 0.02
CPNE3-210ENST00000621245 ST5P78524 1137 aa15.16■□□□□ 0.02
CPNE3-210ENST00000621245 NBPF5PQ86XG9 351 aaPredicted RBP15.16■□□□□ 0.02
CPNE3-210ENST00000621245 RBM46Q8TBY0 533 aaKnown RBP15.16■□□□□ 0.02
CPNE3-210ENST00000621245 NIP7Q9Y221 180 aaKnown RBP eCLIP15.16■□□□□ 0.02
CPNE3-210ENST00000621245 POTECB2RU33 542 aa15.15■□□□□ 0.02
CPNE3-210ENST00000621245 DDX10Q13206 875 aaKnown RBP15.15■□□□□ 0.02
CPNE3-210ENST00000621245 STYK1Q6J9G0 422 aa15.15■□□□□ 0.02
CPNE3-210ENST00000621245 NPM2Q86SE8 214 aaKnown RBP15.15■□□□□ 0.02
CPNE3-210ENST00000621245 DNAJC5GQ8N7S2 189 aa15.15■□□□□ 0.02
CPNE3-210ENST00000621245 NPHP1O15259 732 aa15.14■□□□□ 0.01
CPNE3-210ENST00000621245 MYL6BP14649 208 aa15.14■□□□□ 0.01
CPNE3-210ENST00000621245 CLEC4GQ6UXB4 293 aa15.14■□□□□ 0.01
CPNE3-210ENST00000621245 TAF1P21675 1872 aa15.14■□□□□ 0.01
CPNE3-210ENST00000621245 UBN2Q6ZU65 1347 aa15.14■□□□□ 0.01
CPNE3-210ENST00000621245 MAPK8IP3Q9UPT6 1336 aa15.14■□□□□ 0.01
CPNE3-210ENST00000621245 ZC3H4Q9UPT8 1303 aaKnown RBP15.14■□□□□ 0.01
CPNE3-210ENST00000621245 COL4A5P29400 1685 aa15.13■□□□□ 0.01
CPNE3-210ENST00000621245 GLTPD2A6NH11 291 aa15.13■□□□□ 0.01
CPNE3-210ENST00000621245 APLP1P51693 650 aa15.13■□□□□ 0.01
CPNE3-210ENST00000621245 NUTM1Q86Y26 1132 aa15.13■□□□□ 0.01
CPNE3-210ENST00000621245 CCDC146Q8IYE0 955 aa15.13■□□□□ 0.01
CPNE3-210ENST00000621245 C16orf71Q8IYS4 520 aaPredicted RBP15.13■□□□□ 0.01
CPNE3-210ENST00000621245 SNED1Q8TER0 1413 aa15.13■□□□□ 0.01
CPNE3-210ENST00000621245 C7orf43Q8WVR3 580 aa15.13■□□□□ 0.01
CPNE3-210ENST00000621245 MASTLQ96GX5 879 aa15.13■□□□□ 0.01
CPNE3-210ENST00000621245 ZNF652Q9Y2D9 606 aa15.13■□□□□ 0.01
CPNE3-210ENST00000621245 RRP7AQ9Y3A4 280 aaKnown RBP15.13■□□□□ 0.01
CPNE3-210ENST00000621245 ANXA1P04083 346 aa15.12■□□□□ 0.01
CPNE3-210ENST00000621245 PROSER3Q2NL68 480 aa15.12■□□□□ 0.01
CPNE3-210ENST00000621245 LRP10Q7Z4F1 713 aa15.12■□□□□ 0.01
CPNE3-210ENST00000621245 MAP3K15Q6ZN16 1313 aa15.12■□□□□ 0.01
CPNE3-210ENST00000621245 KLRG2A4D1S0 409 aaPredicted RBP15.11■□□□□ 0.01
CPNE3-210ENST00000621245 ECM2O94769 699 aaPredicted RBP15.11■□□□□ 0.01
CPNE3-210ENST00000621245 GPTP24298 496 aa15.11■□□□□ 0.01
CPNE3-210ENST00000621245 CNKSR1Q969H4 720 aa15.11■□□□□ 0.01
CPNE3-210ENST00000621245 TAOK3Q9H2K8 898 aa15.11■□□□□ 0.01
CPNE3-210ENST00000621245 ZBTB3Q9H5J0 574 aa15.11■□□□□ 0.01
CPNE3-210ENST00000621245 PDZRN3Q9UPQ7 1066 aa15.11■□□□□ 0.01
CPNE3-210ENST00000621245 LTBP3Q9NS15 1303 aa15.11■□□□□ 0.01
CPNE3-210ENST00000621245 NEFMP07197 916 aa15.1■□□□□ 0.01
CPNE3-210ENST00000621245 TMPOP42166 694 aaKnown RBP15.1■□□□□ 0.01
CPNE3-210ENST00000621245 RIPK4P57078 832 aa15.1■□□□□ 0.01
CPNE3-210ENST00000621245 PDIA6Q15084 440 aa15.1■□□□□ 0.01
CPNE3-210ENST00000621245 RALBP1Q15311 655 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms