RNA–Protein interactions for RNA: ENST00000616383.1

MMP28-206, Transcript of matrix metallopeptidase 28, humanhuman

TSL 3

Gene MMP28, Length 696 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-206ENST00000616383 BCL11BQ9C0K0 894 aaPredicted RBP14.01□□□□□ -0.17
MMP28-206ENST00000616383 NOB1Q9ULX3 412 aaKnown RBP14.01□□□□□ -0.17
MMP28-206ENST00000616383 RGPD3A6NKT7 1758 aaPredicted RBP14.01□□□□□ -0.17
MMP28-206ENST00000616383 RGPD4Q7Z3J3 1758 aa14.01□□□□□ -0.17
MMP28-206ENST00000616383 ARFGEF2Q9Y6D5 1785 aa14.01□□□□□ -0.17
MMP28-206ENST00000616383 MYH14Q7Z406 1995 aaKnown RBP14□□□□□ -0.17
MMP28-206ENST00000616383 ZKSCAN2Q63HK3 967 aa14□□□□□ -0.17
MMP28-206ENST00000616383 DNAJC10Q8IXB1 793 aa14□□□□□ -0.17
MMP28-206ENST00000616383 USP16Q9Y5T5 823 aa14□□□□□ -0.17
MMP28-206ENST00000616383 NUP188Q5SRE5 1749 aa14□□□□□ -0.17
MMP28-206ENST00000616383 EP400Q96L91 3159 aa14□□□□□ -0.17
MMP28-206ENST00000616383 LOC102724428A0A0B4J2F2 783 aa13.99□□□□□ -0.17
MMP28-206ENST00000616383 POTEFA5A3E0 1075 aa13.99□□□□□ -0.17
MMP28-206ENST00000616383 IPO8O15397 1037 aaKnown RBP13.99□□□□□ -0.17
MMP28-206ENST00000616383 ANXA1P04083 346 aa13.99□□□□□ -0.17
MMP28-206ENST00000616383 SIK1P57059 783 aa13.99□□□□□ -0.17
MMP28-206ENST00000616383 G2E3Q7L622 706 aa13.99□□□□□ -0.17
MMP28-206ENST00000616383 DBF4Q9UBU7 674 aaPredicted RBP13.99□□□□□ -0.17
MMP28-206ENST00000616383 TNNQ9UQP3 1299 aa13.99□□□□□ -0.17
MMP28-206ENST00000616383 ERBB4Q15303 1308 aa13.98□□□□□ -0.17
MMP28-206ENST00000616383 TRIM37O94972 964 aa13.98□□□□□ -0.17
MMP28-206ENST00000616383 TRIM27P14373 513 aa13.98□□□□□ -0.17
MMP28-206ENST00000616383 FKBP8Q14318 412 aa13.98□□□□□ -0.17
MMP28-206ENST00000616383 PROSER3Q2NL68 480 aa13.98□□□□□ -0.17
MMP28-206ENST00000616383 C20orf194Q5TEA3 1177 aa13.98□□□□□ -0.17
MMP28-206ENST00000616383 ATF7IPQ6VMQ6 1270 aa13.98□□□□□ -0.17
MMP28-206ENST00000616383 TEX13AQ9BXU3 409 aaPredicted RBP13.98□□□□□ -0.17
MMP28-206ENST00000616383 DDX21Q9NR30 783 aaKnown RBP eCLIP13.98□□□□□ -0.17
MMP28-206ENST00000616383 PTPRCP08575 1304 aa13.97□□□□□ -0.17
MMP28-206ENST00000616383 ATP6V1AP38606 617 aa13.97□□□□□ -0.17
MMP28-206ENST00000616383 FLIIQ13045 1269 aa13.97□□□□□ -0.17
MMP28-206ENST00000616383 PDIA6Q15084 440 aa13.97□□□□□ -0.17
MMP28-206ENST00000616383 PANK1Q8TE04 598 aa13.97□□□□□ -0.17
MMP28-206ENST00000616383 ARHGAP45Q92619 1136 aa13.97□□□□□ -0.17
MMP28-206ENST00000616383 FAM212AQ96EL1 285 aa13.97□□□□□ -0.17
MMP28-206ENST00000616383 COLQQ9Y215 455 aaPredicted RBP13.97□□□□□ -0.17
MMP28-206ENST00000616383 AFDNP55196 1824 aaKnown RBP13.97□□□□□ -0.17
MMP28-206ENST00000616383 C4BP0C0L5 1744 aa13.96□□□□□ -0.17
MMP28-206ENST00000616383 STARD3NLO95772 234 aa13.96□□□□□ -0.17
MMP28-206ENST00000616383 MS4A1P11836 297 aa13.96□□□□□ -0.17
MMP28-206ENST00000616383 MYL6BP14649 208 aa13.96□□□□□ -0.17
MMP28-206ENST00000616383 PIP4K2AP48426 406 aaPredicted RBP13.96□□□□□ -0.17
MMP28-206ENST00000616383 ITPK1Q13572 414 aa13.96□□□□□ -0.17
MMP28-206ENST00000616383 PDE3AQ14432 1141 aa13.96□□□□□ -0.17
MMP28-206ENST00000616383 CLUAP1Q96AJ1 413 aa13.96□□□□□ -0.17
MMP28-206ENST00000616383 API5Q9BZZ5 524 aaKnown RBP13.96□□□□□ -0.17
MMP28-206ENST00000616383 PHAXQ9H814 394 aaKnown RBP13.96□□□□□ -0.17
MMP28-206ENST00000616383 HYPKQ9NX55 129 aa13.96□□□□□ -0.17
MMP28-206ENST00000616383 ANKRD36CQ5JPF3 1778 aa13.96□□□□□ -0.18
MMP28-206ENST00000616383 PXDNLA1KZ92 1463 aa13.95□□□□□ -0.18
MMP28-206ENST00000616383 NBPF26B4DH59 902 aa13.95□□□□□ -0.18
MMP28-206ENST00000616383 A1BGP04217 495 aa13.95□□□□□ -0.18
MMP28-206ENST00000616383 CYP19A1P11511 503 aaPredicted RBP13.95□□□□□ -0.18
MMP28-206ENST00000616383 RLBP1P12271 317 aa13.95□□□□□ -0.18
MMP28-206ENST00000616383 FKBP5Q13451 457 aaPredicted RBP13.95□□□□□ -0.18
MMP28-206ENST00000616383 NBPF14Q5TI25 921 aa13.95□□□□□ -0.18
MMP28-206ENST00000616383 NBPF10Q6P3W6 841 aaKnown RBP13.95□□□□□ -0.18
MMP28-206ENST00000616383 FTSJ3Q8IY81 847 aaKnown RBP13.95□□□□□ -0.18
MMP28-206ENST00000616383 DZIP1LQ8IYY4 767 aaKnown RBP13.95□□□□□ -0.18
MMP28-206ENST00000616383 NBPF15Q8N660 670 aa13.95□□□□□ -0.18
MMP28-206ENST00000616383 CRBNQ96SW2 442 aa13.95□□□□□ -0.18
MMP28-206ENST00000616383 SGIP1Q9BQI5 828 aa13.95□□□□□ -0.18
MMP28-206ENST00000616383 GTF3C3Q9Y5Q9 886 aa13.95□□□□□ -0.18
MMP28-206ENST00000616383 ABCC4O15439 1325 aa13.94□□□□□ -0.18
MMP28-206ENST00000616383 BCORQ6W2J9 1755 aa13.94□□□□□ -0.18
MMP28-206ENST00000616383 LRP10Q7Z4F1 713 aa13.94□□□□□ -0.18
MMP28-206ENST00000616383 UBR3Q6ZT12 1888 aa13.93□□□□□ -0.18
MMP28-206ENST00000616383 CCNL1Q9UK58 526 aaPredicted RBP13.93□□□□□ -0.18
MMP28-206ENST00000616383 C4AP0C0L4 1744 aa13.93□□□□□ -0.18
MMP28-206ENST00000616383 NUP98P52948 1817 aa13.92□□□□□ -0.18
MMP28-206ENST00000616383 CRKLP46109 303 aaKnown RBP13.92□□□□□ -0.18
MMP28-206ENST00000616383 KCNQ4P56696 695 aa13.92□□□□□ -0.18
MMP28-206ENST00000616383 TMEM57Q8N5G2 664 aa13.92□□□□□ -0.18
MMP28-206ENST00000616383 LINC00116Q8NCU8 138 aa13.92□□□□□ -0.18
MMP28-206ENST00000616383 EXOC6Q8TAG9 804 aa13.92□□□□□ -0.18
MMP28-206ENST00000616383 XAGE3Q8WTP9 111 aa13.92□□□□□ -0.18
MMP28-206ENST00000616383 CCDC87Q9NVE4 849 aa13.92□□□□□ -0.18
MMP28-206ENST00000616383 ZBTB1Q9Y2K1 713 aa13.92□□□□□ -0.18
MMP28-206ENST00000616383 COG6Q9Y2V7 657 aa13.92□□□□□ -0.18
MMP28-206ENST00000616383 ADCY9O60503 1353 aa13.92□□□□□ -0.18
MMP28-206ENST00000616383 TUBGCP6Q96RT7 1819 aa13.92□□□□□ -0.18
MMP28-206ENST00000616383 SCN7AQ01118 1682 aa13.91□□□□□ -0.18
MMP28-206ENST00000616383 F6X3S4 739 aa13.91□□□□□ -0.18
MMP28-206ENST00000616383 NUBP1P53384 320 aa13.91□□□□□ -0.18
MMP28-206ENST00000616383 AIMP1Q12904 312 aaKnown RBP13.91□□□□□ -0.18
MMP28-206ENST00000616383 IER5LQ5T953 404 aa13.91□□□□□ -0.18
MMP28-206ENST00000616383 CNTNAP4Q9C0A0 1308 aa13.9□□□□□ -0.18
MMP28-206ENST00000616383 DDX58O95786 925 aaKnown RBP13.9□□□□□ -0.18
MMP28-206ENST00000616383 MVPQ14764 893 aaKnown RBP13.9□□□□□ -0.18
MMP28-206ENST00000616383 INTS5Q6P9B9 1019 aaKnown RBP13.9□□□□□ -0.18
MMP28-206ENST00000616383 COPS6Q7L5N1 327 aa13.9□□□□□ -0.18
MMP28-206ENST00000616383 IFNL1Q8IU54 200 aa13.9□□□□□ -0.18
MMP28-206ENST00000616383 ITPRIPQ8IWB1 547 aa13.9□□□□□ -0.18
MMP28-206ENST00000616383 TMEM106CQ9BVX2 250 aa13.9□□□□□ -0.18
MMP28-206ENST00000616383 ZNF330Q9Y3S2 320 aaPredicted RBP13.9□□□□□ -0.18
MMP28-206ENST00000616383 PI4KAP2A4QPH2 592 aa13.89□□□□□ -0.19
MMP28-206ENST00000616383 APBA3O96018 575 aa13.89□□□□□ -0.19
MMP28-206ENST00000616383 LCE2DQ5TA82 110 aaPredicted RBP13.89□□□□□ -0.19
MMP28-206ENST00000616383 SLC4A10Q6U841 1118 aa13.89□□□□□ -0.19
MMP28-206ENST00000616383 KSR2Q6VAB6 950 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms