RNA–Protein interactions for RNA: ENST00000612856.4

FAM3A-221, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 3,995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-221ENST00000612856 ZKSCAN1P17029 563 aaPredicted RBP12.99□□□□□ -0.33
FAM3A-221ENST00000612856 DCAF8L1A6NGE4 600 aa12.98□□□□□ -0.33
FAM3A-221ENST00000612856 CCDC158Q5M9N0 1113 aa12.98□□□□□ -0.33
FAM3A-221ENST00000612856 DZIP3Q86Y13 1208 aaKnown RBP12.98□□□□□ -0.33
FAM3A-221ENST00000612856 AXIN2Q9Y2T1 843 aa12.98□□□□□ -0.33
FAM3A-221ENST00000612856 RNMTO43148 476 aaKnown RBP12.98□□□□□ -0.33
FAM3A-221ENST00000612856 TRDNQ13061 729 aa12.98□□□□□ -0.33
FAM3A-221ENST00000612856 ZNF652Q9Y2D9 606 aa12.98□□□□□ -0.33
FAM3A-221ENST00000612856 USP16Q9Y5T5 823 aa12.98□□□□□ -0.33
FAM3A-221ENST00000612856 MARCH6O60337 910 aa12.98□□□□□ -0.33
FAM3A-221ENST00000612856 EDC4Q6P2E9 1401 aaKnown RBP12.98□□□□□ -0.33
FAM3A-221ENST00000612856 LMBR1LQ6UX01 489 aa12.98□□□□□ -0.33
FAM3A-221ENST00000612856 CGNQ9P2M7 1197 aaKnown RBP12.98□□□□□ -0.33
FAM3A-221ENST00000612856 RPGRQ92834 1020 aaKnown RBP12.97□□□□□ -0.33
FAM3A-221ENST00000612856 PRAMEF22A3QJZ6 481 aa12.97□□□□□ -0.33
FAM3A-221ENST00000612856 PPP1R42Q7Z4L9 355 aa12.97□□□□□ -0.33
FAM3A-221ENST00000612856 ASAP1Q9ULH1 1129 aa12.97□□□□□ -0.33
FAM3A-221ENST00000612856 ARHGEF40Q8TER5 1519 aa12.97□□□□□ -0.33
FAM3A-221ENST00000612856 FSD2A1L4K1 749 aa12.97□□□□□ -0.33
FAM3A-221ENST00000612856 PRPF40AO75400 957 aaKnown RBP12.97□□□□□ -0.33
FAM3A-221ENST00000612856 OFD1O75665 1012 aa12.97□□□□□ -0.33
FAM3A-221ENST00000612856 STK3Q13188 491 aa12.97□□□□□ -0.33
FAM3A-221ENST00000612856 ZNF790Q6PG37 636 aa12.97□□□□□ -0.33
FAM3A-221ENST00000612856 CPLX1O14810 134 aa12.96□□□□□ -0.33
FAM3A-221ENST00000612856 SSFA2P28290 1259 aa12.96□□□□□ -0.33
FAM3A-221ENST00000612856 KDM4FA0A1W2PPD8 638 aa12.96□□□□□ -0.33
FAM3A-221ENST00000612856 CSPP1Q1MSJ5 1256 aa12.96□□□□□ -0.33
FAM3A-221ENST00000612856 SETDB2Q96T68 719 aa12.96□□□□□ -0.33
FAM3A-221ENST00000612856 ZC3H13Q5T200 1668 aaKnown RBP12.96□□□□□ -0.33
FAM3A-221ENST00000612856 RALYLQ86SE5 291 aaKnown RBP12.96□□□□□ -0.33
FAM3A-221ENST00000612856 RUFY2Q8WXA3 655 aa12.96□□□□□ -0.33
FAM3A-221ENST00000612856 DCAF5Q96JK2 942 aa12.96□□□□□ -0.33
FAM3A-221ENST00000612856 NSFL1CQ9UNZ2 370 aaKnown RBP12.96□□□□□ -0.33
FAM3A-221ENST00000612856 RTCBQ9Y3I0 505 aaKnown RBP12.96□□□□□ -0.33
FAM3A-221ENST00000612856 ARHGEF28Q8N1W1 1705 aaKnown RBP12.96□□□□□ -0.34
FAM3A-221ENST00000612856 VPS37CA5D8V6 355 aaPredicted RBP12.96□□□□□ -0.34
FAM3A-221ENST00000612856 FAM184AQ8NB25 1140 aa12.96□□□□□ -0.34
FAM3A-221ENST00000612856 HYPKQ9NX55 129 aa12.96□□□□□ -0.34
FAM3A-221ENST00000612856 IL17REQ8NFR9 667 aa12.95□□□□□ -0.34
FAM3A-221ENST00000612856 ST18O60284 1047 aa12.95□□□□□ -0.34
FAM3A-221ENST00000612856 MTERF4Q7Z6M4 381 aaKnown RBP12.95□□□□□ -0.34
FAM3A-221ENST00000612856 CCDC82Q8N4S0 544 aa12.95□□□□□ -0.34
FAM3A-221ENST00000612856 MRPL50Q8N5N7 158 aaKnown RBP12.95□□□□□ -0.34
FAM3A-221ENST00000612856 CD163L1Q9NR16 1453 aa12.94□□□□□ -0.34
FAM3A-221ENST00000612856 AMOTL1Q8IY63 956 aa12.94□□□□□ -0.34
FAM3A-221ENST00000612856 REC8O95072 547 aa12.94□□□□□ -0.34
FAM3A-221ENST00000612856 HSPA1LP34931 641 aa12.94□□□□□ -0.34
FAM3A-221ENST00000612856 NEK4P51957 841 aa12.94□□□□□ -0.34
FAM3A-221ENST00000612856 HSP90AB3PQ58FF7 597 aa12.94□□□□□ -0.34
FAM3A-221ENST00000612856 RBM26Q5T8P6 1007 aaKnown RBP12.94□□□□□ -0.34
FAM3A-221ENST00000612856 H3BQV1 296 aa12.94□□□□□ -0.34
FAM3A-221ENST00000612856 RIMBP2O15034 1052 aa12.94□□□□□ -0.34
FAM3A-221ENST00000612856 PTMSP20962 102 aa12.94□□□□□ -0.34
FAM3A-221ENST00000612856 AKAP17AQ02040 695 aaKnown RBP12.94□□□□□ -0.34
FAM3A-221ENST00000612856 IFFO2Q5TF58 517 aa12.94□□□□□ -0.34
FAM3A-221ENST00000612856 C16orf71Q8IYS4 520 aaPredicted RBP12.94□□□□□ -0.34
FAM3A-221ENST00000612856 UPF3BQ9BZI7 483 aaKnown RBP12.94□□□□□ -0.34
FAM3A-221ENST00000612856 CWC25Q9NXE8 425 aaPredicted RBP12.94□□□□□ -0.34
FAM3A-221ENST00000612856 CHD1LQ86WJ1 897 aa12.93□□□□□ -0.34
FAM3A-221ENST00000612856 IFT172Q9UG01 1749 aa12.93□□□□□ -0.34
FAM3A-221ENST00000612856 MINDY4BA8MYZ0 360 aa12.93□□□□□ -0.34
FAM3A-221ENST00000612856 ANTXR1Q9H6X2 564 aa12.93□□□□□ -0.34
FAM3A-221ENST00000612856 CPS1P31327 1500 aa12.93□□□□□ -0.34
FAM3A-221ENST00000612856 CNTROBQ8N137 903 aa12.93□□□□□ -0.34
FAM3A-221ENST00000612856 CTDP1Q9Y5B0 961 aaPredicted RBP12.93□□□□□ -0.34
FAM3A-221ENST00000612856 CT47B1P0C2W7 299 aaPredicted RBP12.92□□□□□ -0.34
FAM3A-221ENST00000612856 SF3A1Q15459 793 aaKnown RBP12.92□□□□□ -0.34
FAM3A-221ENST00000612856 SYNE3Q6ZMZ3 975 aa12.92□□□□□ -0.34
FAM3A-221ENST00000612856 PAXIP1Q6ZW49 1069 aaPredicted RBP12.92□□□□□ -0.34
FAM3A-221ENST00000612856 ARHGEF25Q86VW2 580 aa12.92□□□□□ -0.34
FAM3A-221ENST00000612856 TRERF1Q96PN7 1200 aa12.92□□□□□ -0.34
FAM3A-221ENST00000612856 PLEKHG1Q9ULL1 1385 aa12.92□□□□□ -0.34
FAM3A-221ENST00000612856 PPP4R3BQ5MIZ7 849 aa12.92□□□□□ -0.34
FAM3A-221ENST00000612856 ZNF830Q96NB3 372 aaPredicted RBP12.92□□□□□ -0.34
FAM3A-221ENST00000612856 RBM27Q9P2N5 1060 aaKnown RBP12.92□□□□□ -0.34
FAM3A-221ENST00000612856 INTS3Q68E01 1043 aaKnown RBP12.92□□□□□ -0.34
FAM3A-221ENST00000612856 DDX46Q7L014 1031 aaKnown RBP12.92□□□□□ -0.34
FAM3A-221ENST00000612856 IL16Q14005 1332 aa12.91□□□□□ -0.34
FAM3A-221ENST00000612856 ZNF594Q96JF6 807 aaPredicted RBP12.91□□□□□ -0.34
FAM3A-221ENST00000612856 NDUFB9Q9Y6M9 179 aa12.91□□□□□ -0.34
FAM3A-221ENST00000612856 USP19O94966 1318 aa12.91□□□□□ -0.34
FAM3A-221ENST00000612856 SYCE3A1L190 88 aa12.91□□□□□ -0.34
FAM3A-221ENST00000612856 ALDH1L2Q3SY69 923 aa12.91□□□□□ -0.34
FAM3A-221ENST00000612856 ZBTB40Q9NUA8 1239 aa12.91□□□□□ -0.34
FAM3A-221ENST00000612856 DTNBO60941 627 aa12.9□□□□□ -0.34
FAM3A-221ENST00000612856 RAB11FIP4Q86YS3 637 aa12.9□□□□□ -0.34
FAM3A-221ENST00000612856 GNL3LQ9NVN8 582 aaKnown RBP12.9□□□□□ -0.34
FAM3A-221ENST00000612856 ANKRD18BA2A2Z9 1011 aa12.9□□□□□ -0.34
FAM3A-221ENST00000612856 GOLIM4O00461 696 aa12.9□□□□□ -0.34
FAM3A-221ENST00000612856 IFIT1P09914 478 aaKnown RBP12.9□□□□□ -0.34
FAM3A-221ENST00000612856 TNNT3P45378 269 aaPredicted RBP12.9□□□□□ -0.34
FAM3A-221ENST00000612856 LRRFIP1Q32MZ4 808 aaKnown RBP12.9□□□□□ -0.34
FAM3A-221ENST00000612856 DRC7Q8IY82 874 aa12.9□□□□□ -0.34
FAM3A-221ENST00000612856 ADAMTS13Q76LX8 1427 aa12.9□□□□□ -0.34
FAM3A-221ENST00000612856 PCDH11XQ9BZA7 1347 aa12.9□□□□□ -0.35
FAM3A-221ENST00000612856 PCDH11YQ9BZA8 1340 aa12.9□□□□□ -0.35
FAM3A-221ENST00000612856 PTPRUQ92729 1446 aa12.89□□□□□ -0.35
FAM3A-221ENST00000612856 NLRP3Q96P20 1036 aa12.89□□□□□ -0.35
FAM3A-221ENST00000612856 TDO2P48775 406 aa12.89□□□□□ -0.35
FAM3A-221ENST00000612856 HAND2P61296 217 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms