RNA–Protein interactions for RNA: ENST00000601324.1

VRK3-222, Transcript of vaccinia related kinase 3, human

TSL 4

Gene VRK3, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-222	ENST00000601324	MADD	Q8WXG6	1647 aa		7.6	□□□□□ -1.19
VRK3-222	ENST00000601324	TTBK1	Q5TCY1	1321 aa	Predicted RBP	7.6	□□□□□ -1.19
VRK3-222	ENST00000601324	TTLL8	A6PVC2	850 aa		7.6	□□□□□ -1.19
VRK3-222	ENST00000601324	GTF2E1	P29083	439 aa	Predicted RBP	7.6	□□□□□ -1.19
VRK3-222	ENST00000601324	C1orf216	Q8TAB5	229 aa		7.6	□□□□□ -1.19
VRK3-222	ENST00000601324	RNF217	Q8TC41	542 aa		7.6	□□□□□ -1.19
VRK3-222	ENST00000601324	SCG3	Q8WXD2	468 aa	Known RBP	7.6	□□□□□ -1.19
VRK3-222	ENST00000601324	ZFP42	Q96MM3	310 aa		7.6	□□□□□ -1.19
VRK3-222	ENST00000601324	ATAD2	Q6PL18	1390 aa		7.59	□□□□□ -1.19
VRK3-222	ENST00000601324	SPATA31D1	Q6ZQQ2	1576 aa		7.59	□□□□□ -1.19
VRK3-222	ENST00000601324	SOS2	Q07890	1332 aa	Predicted RBP	7.59	□□□□□ -1.19
VRK3-222	ENST00000601324	C21orf2	O43822	256 aa		7.59	□□□□□ -1.19
VRK3-222	ENST00000601324	PHLDB3	Q6NSJ2	640 aa		7.59	□□□□□ -1.19
VRK3-222	ENST00000601324	TMEM214	Q6NUQ4	689 aa	Known RBP	7.59	□□□□□ -1.19
VRK3-222	ENST00000601324	ZNF295-AS1	Q8N0V1	137 aa		7.59	□□□□□ -1.19
VRK3-222	ENST00000601324	KCTD17	Q8N5Z5	321 aa		7.59	□□□□□ -1.19
VRK3-222	ENST00000601324	USP3	Q9Y6I4	520 aa		7.59	□□□□□ -1.19
VRK3-222	ENST00000601324	KIF27	Q86VH2	1401 aa		7.59	□□□□□ -1.19
VRK3-222	ENST00000601324	FRMPD1	Q5SYB0	1578 aa		7.59	□□□□□ -1.2
VRK3-222	ENST00000601324	SPATA31C2	B4DYI2	1134 aa		7.58	□□□□□ -1.2
VRK3-222	ENST00000601324	FOXO3	O43524	673 aa		7.58	□□□□□ -1.2
VRK3-222	ENST00000601324	PPP1R12B	O60237	982 aa	Predicted RBP	7.58	□□□□□ -1.2
VRK3-222	ENST00000601324	PSMA6	P60900	246 aa	Known RBP	7.58	□□□□□ -1.2
VRK3-222	ENST00000601324	GNAS	Q5JWF2	1037 aa		7.58	□□□□□ -1.2
VRK3-222	ENST00000601324	TBCEL	Q5QJ74	424 aa		7.58	□□□□□ -1.2
VRK3-222	ENST00000601324	STAG2	Q8N3U4	1231 aa		7.58	□□□□□ -1.2
VRK3-222	ENST00000601324	RHBDD1	Q8TEB9	315 aa		7.58	□□□□□ -1.2
VRK3-222	ENST00000601324	DACH1	Q9UI36	760 aa		7.58	□□□□□ -1.2
VRK3-222	ENST00000601324	PATL2	C9JE40	543 aa	Known RBP	7.57	□□□□□ -1.2
VRK3-222	ENST00000601324	KCNA1	Q09470	495 aa		7.57	□□□□□ -1.2
VRK3-222	ENST00000601324	FKBP5	Q13451	457 aa	Predicted RBP	7.57	□□□□□ -1.2
VRK3-222	ENST00000601324	TEAD4	Q15561	434 aa		7.57	□□□□□ -1.2
VRK3-222	ENST00000601324	POTEA	Q6S8J7	498 aa		7.57	□□□□□ -1.2
VRK3-222	ENST00000601324		Q6ZNB5	142 aa		7.57	□□□□□ -1.2
VRK3-222	ENST00000601324	TAS1R3	Q7RTX0	852 aa		7.57	□□□□□ -1.2
VRK3-222	ENST00000601324	NIFK	Q9BYG3	293 aa	Known RBP	7.57	□□□□□ -1.2
VRK3-222	ENST00000601324	CHMP3	Q9Y3E7	222 aa		7.57	□□□□□ -1.2
VRK3-222	ENST00000601324	ABCA8	O94911	1581 aa		7.57	□□□□□ -1.2
VRK3-222	ENST00000601324	PHLDB1	Q86UU1	1377 aa		7.57	□□□□□ -1.2
VRK3-222	ENST00000601324	KIAA0556	O60303	1618 aa		7.56	□□□□□ -1.2
VRK3-222	ENST00000601324	LYSMD3	Q7Z3D4	306 aa		7.56	□□□□□ -1.2
VRK3-222	ENST00000601324	C2orf49	Q9BVC5	232 aa	Predicted RBP	7.56	□□□□□ -1.2
VRK3-222	ENST00000601324	CABP1	Q9NZU7	370 aa		7.56	□□□□□ -1.2
VRK3-222	ENST00000601324	RAPGEF3	O95398	923 aa		7.55	□□□□□ -1.2
VRK3-222	ENST00000601324	HIRA	P54198	1017 aa	Predicted RBP	7.55	□□□□□ -1.2
VRK3-222	ENST00000601324	C4orf17	Q53FE4	359 aa		7.55	□□□□□ -1.2
VRK3-222	ENST00000601324	WDR44	Q5JSH3	913 aa		7.55	□□□□□ -1.2
VRK3-222	ENST00000601324	PRICKLE2	Q7Z3G6	844 aa		7.55	□□□□□ -1.2
VRK3-222	ENST00000601324	AEBP1	Q8IUX7	1158 aa		7.55	□□□□□ -1.2
VRK3-222	ENST00000601324	ZDHHC1	Q8WTX9	485 aa		7.55	□□□□□ -1.2
VRK3-222	ENST00000601324	COL26A1	Q96A83	441 aa		7.55	□□□□□ -1.2
VRK3-222	ENST00000601324	KIFC2	Q96AC6	838 aa		7.55	□□□□□ -1.2
VRK3-222	ENST00000601324	SENP2	Q9HC62	589 aa		7.55	□□□□□ -1.2
VRK3-222	ENST00000601324	DNMT3L	Q9UJW3	386 aa		7.55	□□□□□ -1.2
VRK3-222	ENST00000601324	SERTM1	A2A2V5	107 aa		7.54	□□□□□ -1.2
VRK3-222	ENST00000601324	FIGNL2	A6NMB9	653 aa		7.54	□□□□□ -1.2
VRK3-222	ENST00000601324	EML1	O00423	815 aa		7.54	□□□□□ -1.2
VRK3-222	ENST00000601324	PTCD1	O75127	700 aa	Known RBP	7.54	□□□□□ -1.2
VRK3-222	ENST00000601324	ARID4A	P29374	1257 aa	Predicted RBP	7.54	□□□□□ -1.2
VRK3-222	ENST00000601324	NOS2	P35228	1153 aa		7.54	□□□□□ -1.2
VRK3-222	ENST00000601324	POU4F2	Q12837	409 aa		7.54	□□□□□ -1.2
VRK3-222	ENST00000601324	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	7.54	□□□□□ -1.2
VRK3-222	ENST00000601324	NBPF10	Q6P3W6	841 aa	Known RBP	7.54	□□□□□ -1.2
VRK3-222	ENST00000601324	L3MBTL2	Q969R5	705 aa		7.54	□□□□□ -1.2
VRK3-222	ENST00000601324	VTI1A	Q96AJ9	217 aa		7.54	□□□□□ -1.2
VRK3-222	ENST00000601324	ZNF232	Q9UNY5	417 aa		7.54	□□□□□ -1.2
VRK3-222	ENST00000601324	SIGLEC1	Q9BZZ2	1709 aa		7.53	□□□□□ -1.2
VRK3-222	ENST00000601324	LCE2B	O14633	110 aa		7.53	□□□□□ -1.2
VRK3-222	ENST00000601324	MAN1A2	O60476	641 aa		7.53	□□□□□ -1.2
VRK3-222	ENST00000601324	PLA2G4A	P47712	749 aa		7.53	□□□□□ -1.2
VRK3-222	ENST00000601324	MKNK1	Q9BUB5	465 aa		7.53	□□□□□ -1.2
VRK3-222	ENST00000601324	MTMR7	Q9Y216	660 aa		7.53	□□□□□ -1.2
VRK3-222	ENST00000601324	GNE	Q9Y223	722 aa	Known RBP	7.53	□□□□□ -1.2
VRK3-222	ENST00000601324	NEO1	Q92859	1461 aa		7.53	□□□□□ -1.2
VRK3-222	ENST00000601324	RIMS1	Q86UR5	1692 aa	Known RBP	7.53	□□□□□ -1.2
VRK3-222	ENST00000601324	STRC	Q7RTU9	1775 aa		7.52	□□□□□ -1.21
VRK3-222	ENST00000601324	SCNN1A	P37088	669 aa		7.52	□□□□□ -1.21
VRK3-222	ENST00000601324	PHKA2	P46019	1235 aa		7.52	□□□□□ -1.21
VRK3-222	ENST00000601324	SH3PXD2A	Q5TCZ1	1133 aa		7.52	□□□□□ -1.21
VRK3-222	ENST00000601324	TXNDC2	Q86VQ3	553 aa		7.52	□□□□□ -1.21
VRK3-222	ENST00000601324	CCER1	Q8TC90	406 aa	Predicted RBP	7.52	□□□□□ -1.21
VRK3-222	ENST00000601324	TRIM47	Q96LD4	638 aa		7.52	□□□□□ -1.21
VRK3-222	ENST00000601324	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	7.52	□□□□□ -1.21
VRK3-222	ENST00000601324	PARP3	Q9Y6F1	533 aa		7.52	□□□□□ -1.21
VRK3-222	ENST00000601324	ABCA9	Q8IUA7	1624 aa		7.52	□□□□□ -1.21
VRK3-222	ENST00000601324	LTBP4	Q8N2S1	1624 aa		7.52	□□□□□ -1.21
VRK3-222	ENST00000601324	ARHGEF40	Q8TER5	1519 aa		7.52	□□□□□ -1.21
VRK3-222	ENST00000601324	YEATS2	Q9ULM3	1422 aa		7.52	□□□□□ -1.21
VRK3-222	ENST00000601324	ZBTB7C	A1YPR0	619 aa		7.51	□□□□□ -1.21
VRK3-222	ENST00000601324	RHOQ	P17081	205 aa		7.51	□□□□□ -1.21
VRK3-222	ENST00000601324	NBPF1	Q3BBV0	1214 aa		7.51	□□□□□ -1.21
VRK3-222	ENST00000601324	ZDHHC3	Q9NYG2	299 aa		7.51	□□□□□ -1.21
VRK3-222	ENST00000601324	GMPR2	Q9P2T1	348 aa	Known RBP	7.51	□□□□□ -1.21
VRK3-222	ENST00000601324	ATP10B	O94823	1461 aa		7.5	□□□□□ -1.21
VRK3-222	ENST00000601324	CAPN12	Q6ZSI9	719 aa		7.5	□□□□□ -1.21
VRK3-222	ENST00000601324	TIMMDC1	Q9NPL8	285 aa		7.5	□□□□□ -1.21
VRK3-222	ENST00000601324	SEPT3	Q9UH03	358 aa		7.5	□□□□□ -1.21
VRK3-222	ENST00000601324	IVNS1ABP	Q9Y6Y0	642 aa		7.5	□□□□□ -1.21
VRK3-222	ENST00000601324	FHOD3	Q2V2M9	1422 aa		7.5	□□□□□ -1.21
VRK3-222	ENST00000601324	TTC37	Q6PGP7	1564 aa		7.5	□□□□□ -1.21

Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms