RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 THUMPD2Q9BTF0 503 aaKnown RBP12.92□□□□□ -0.34
VRK3-216ENST00000599342 ZNF219Q9P2Y4 722 aaPredicted RBP12.92□□□□□ -0.34
VRK3-216ENST00000599342 NIP7Q9Y221 180 aaKnown RBP eCLIP12.92□□□□□ -0.34
VRK3-216ENST00000599342 KDM3BQ7LBC6 1761 aa12.92□□□□□ -0.34
VRK3-216ENST00000599342 COL11A2P13942 1736 aaPredicted RBP12.91□□□□□ -0.34
VRK3-216ENST00000599342 C21orf2O43822 256 aa12.91□□□□□ -0.34
VRK3-216ENST00000599342 DDX10Q13206 875 aaKnown RBP12.91□□□□□ -0.34
VRK3-216ENST00000599342 STYK1Q6J9G0 422 aa12.91□□□□□ -0.34
VRK3-216ENST00000599342 MASTLQ96GX5 879 aa12.91□□□□□ -0.34
VRK3-216ENST00000599342 SBF1O95248 1867 aa12.91□□□□□ -0.34
VRK3-216ENST00000599342 MYBBP1AQ9BQG0 1328 aaKnown RBP12.9□□□□□ -0.34
VRK3-216ENST00000599342 TNRC6CQ9HCJ0 1690 aaKnown RBP12.9□□□□□ -0.34
VRK3-216ENST00000599342 NFKBIEO00221 500 aa12.9□□□□□ -0.34
VRK3-216ENST00000599342 APLP1P51693 650 aa12.9□□□□□ -0.34
VRK3-216ENST00000599342 EIF4A1P60842 406 aaKnown RBP12.9□□□□□ -0.34
VRK3-216ENST00000599342 SOGA3Q5TF21 947 aa12.9□□□□□ -0.34
VRK3-216ENST00000599342 TPTE2Q6XPS3 522 aa12.9□□□□□ -0.34
VRK3-216ENST00000599342 NGEFQ8N5V2 710 aa12.9□□□□□ -0.34
VRK3-216ENST00000599342 RBM46Q8TBY0 533 aaKnown RBP12.9□□□□□ -0.34
VRK3-216ENST00000599342 RRAGCQ9HB90 399 aa12.9□□□□□ -0.34
VRK3-216ENST00000599342 TSPYL4Q9UJ04 414 aa12.9□□□□□ -0.34
VRK3-216ENST00000599342 FAM177BA6PVY3 158 aa12.89□□□□□ -0.35
VRK3-216ENST00000599342 SRGNP10124 158 aa12.89□□□□□ -0.35
VRK3-216ENST00000599342 GTF2E1P29083 439 aaPredicted RBP12.89□□□□□ -0.35
VRK3-216ENST00000599342 RIPK4P57078 832 aa12.89□□□□□ -0.35
VRK3-216ENST00000599342 LMOD3Q0VAK6 560 aa12.89□□□□□ -0.35
VRK3-216ENST00000599342 PRPF40BQ6NWY9 871 aaKnown RBP12.89□□□□□ -0.35
VRK3-216ENST00000599342 KIF6Q6ZMV9 814 aa12.89□□□□□ -0.35
VRK3-216ENST00000599342 RRP7AQ9Y3A4 280 aaKnown RBP12.89□□□□□ -0.35
VRK3-216ENST00000599342 TIAM2Q8IVF5 1701 aa12.88□□□□□ -0.35
VRK3-216ENST00000599342 GLTPD2A6NH11 291 aa12.88□□□□□ -0.35
VRK3-216ENST00000599342 MYL6BP14649 208 aa12.88□□□□□ -0.35
VRK3-216ENST00000599342 PRELPP51888 382 aa12.88□□□□□ -0.35
VRK3-216ENST00000599342 HLFQ16534 295 aa12.88□□□□□ -0.35
VRK3-216ENST00000599342 TAOK3Q9H2K8 898 aa12.88□□□□□ -0.35
VRK3-216ENST00000599342 MAP3K15Q6ZN16 1313 aa12.88□□□□□ -0.35
VRK3-216ENST00000599342 ERVV-1B6SEH8 477 aa12.87□□□□□ -0.35
VRK3-216ENST00000599342 NPR1P16066 1061 aa12.87□□□□□ -0.35
VRK3-216ENST00000599342 FSTL1Q12841 308 aa12.87□□□□□ -0.35
VRK3-216ENST00000599342 WDR43Q15061 677 aaKnown RBP eCLIP12.87□□□□□ -0.35
VRK3-216ENST00000599342 ERFEQ4G0M1 354 aa12.87□□□□□ -0.35
VRK3-216ENST00000599342 DPY19L2Q6NUT2 758 aa12.87□□□□□ -0.35
VRK3-216ENST00000599342 NYXQ9GZU5 481 aa12.87□□□□□ -0.35
VRK3-216ENST00000599342 ERBB4Q15303 1308 aa12.87□□□□□ -0.35
VRK3-216ENST00000599342 LTBP3Q9NS15 1303 aa12.87□□□□□ -0.35
VRK3-216ENST00000599342 VEGFAP15692 232 aaPredicted RBP12.86□□□□□ -0.35
VRK3-216ENST00000599342 TMPOP42166 694 aaKnown RBP12.86□□□□□ -0.35
VRK3-216ENST00000599342 CCDC93Q567U6 631 aa12.86□□□□□ -0.35
VRK3-216ENST00000599342 ARFGEF2Q9Y6D5 1785 aa12.86□□□□□ -0.35
VRK3-216ENST00000599342 CACNA1SQ13698 1873 aa12.85□□□□□ -0.35
VRK3-216ENST00000599342 TTLL7Q6ZT98 887 aa12.85□□□□□ -0.35
VRK3-216ENST00000599342 CCDC146Q8IYE0 955 aa12.85□□□□□ -0.35
VRK3-216ENST00000599342 SMC1BQ8NDV3 1235 aa12.85□□□□□ -0.35
VRK3-216ENST00000599342 ZBTB3Q9H5J0 574 aa12.85□□□□□ -0.35
VRK3-216ENST00000599342 BABAM1Q9NWV8 329 aa12.85□□□□□ -0.35
VRK3-216ENST00000599342 FER1L6Q2WGJ9 1857 aa12.85□□□□□ -0.35
VRK3-216ENST00000599342 SLX4Q8IY92 1834 aa12.84□□□□□ -0.35
VRK3-216ENST00000599342 KLRG2A4D1S0 409 aaPredicted RBP12.84□□□□□ -0.35
VRK3-216ENST00000599342 EIF2S2P20042 333 aaKnown RBP12.84□□□□□ -0.35
VRK3-216ENST00000599342 NEUROD2Q15784 382 aa12.84□□□□□ -0.35
VRK3-216ENST00000599342 CCDC88AQ3V6T2 1871 aa12.84□□□□□ -0.35
VRK3-216ENST00000599342 CEP350Q5VT06 3117 aa12.84□□□□□ -0.35
VRK3-216ENST00000599342 IBTKQ9P2D0 1353 aaPredicted RBP12.83□□□□□ -0.36
VRK3-216ENST00000599342 GPTP24298 496 aa12.83□□□□□ -0.36
VRK3-216ENST00000599342 ALDH1B1P30837 517 aa12.83□□□□□ -0.36
VRK3-216ENST00000599342 NUTM1Q86Y26 1132 aa12.83□□□□□ -0.36
VRK3-216ENST00000599342 RUNDC1Q96C34 613 aa12.83□□□□□ -0.36
VRK3-216ENST00000599342 ABCC12Q96J65 1359 aa12.82□□□□□ -0.36
VRK3-216ENST00000599342 GIGYF2Q6Y7W6 1299 aaKnown RBP12.82□□□□□ -0.36
VRK3-216ENST00000599342 RTKN2Q8IZC4 609 aa12.82□□□□□ -0.36
VRK3-216ENST00000599342 RPGRQ92834 1020 aaKnown RBP12.82□□□□□ -0.36
VRK3-216ENST00000599342 UBN2Q6ZU65 1347 aa12.82□□□□□ -0.36
VRK3-216ENST00000599342 WDR90Q96KV7 1748 aa12.82□□□□□ -0.36
VRK3-216ENST00000599342 NUP98P52948 1817 aa12.81□□□□□ -0.36
VRK3-216ENST00000599342 FKBP4Q02790 459 aaKnown RBP eCLIP12.81□□□□□ -0.36
VRK3-216ENST00000599342 PPP1R42Q7Z4L9 355 aa12.81□□□□□ -0.36
VRK3-216ENST00000599342 C7orf43Q8WVR3 580 aa12.81□□□□□ -0.36
VRK3-216ENST00000599342 LAS1LQ9Y4W2 734 aaKnown RBP12.81□□□□□ -0.36
VRK3-216ENST00000599342 DICER1Q9UPY3 1922 aaKnown RBP12.81□□□□□ -0.36
VRK3-216ENST00000599342 RIC1Q4ADV7 1423 aa12.8□□□□□ -0.36
VRK3-216ENST00000599342 CRY2Q49AN0 593 aa12.8□□□□□ -0.36
VRK3-216ENST00000599342 PARP10Q53GL7 1025 aa12.8□□□□□ -0.36
VRK3-216ENST00000599342 SUSD4Q5VX71 490 aa12.8□□□□□ -0.36
VRK3-216ENST00000599342 ZNF34Q8IZ26 560 aa12.8□□□□□ -0.36
VRK3-216ENST00000599342 NECTIN2Q92692 538 aa12.8□□□□□ -0.36
VRK3-216ENST00000599342 PRKRIP1Q9H875 184 aaPredicted RBP12.8□□□□□ -0.36
VRK3-216ENST00000599342 DDNO94850 711 aaPredicted RBP12.79□□□□□ -0.36
VRK3-216ENST00000599342 NTSR2O95665 410 aa12.79□□□□□ -0.36
VRK3-216ENST00000599342 ANXA1P04083 346 aa12.79□□□□□ -0.36
VRK3-216ENST00000599342 PDIA6Q15084 440 aa12.79□□□□□ -0.36
VRK3-216ENST00000599342 PROSER3Q2NL68 480 aa12.79□□□□□ -0.36
VRK3-216ENST00000599342 OLFM4Q6UX06 510 aa12.79□□□□□ -0.36
VRK3-216ENST00000599342 RBM17Q96I25 401 aaKnown RBP12.79□□□□□ -0.36
VRK3-216ENST00000599342 ZNF277Q9NRM2 450 aaPredicted RBP12.79□□□□□ -0.36
VRK3-216ENST00000599342 ADAMTS8Q9UP79 889 aa12.79□□□□□ -0.36
VRK3-216ENST00000599342 IQCA1LA6NCM1 817 aa12.78□□□□□ -0.36
VRK3-216ENST00000599342 POTECB2RU33 542 aa12.78□□□□□ -0.36
VRK3-216ENST00000599342 CHL1O00533 1208 aa12.78□□□□□ -0.36
VRK3-216ENST00000599342 HTRA3P83110 453 aa12.78□□□□□ -0.36
VRK3-216ENST00000599342 AIMP1Q12904 312 aaKnown RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms