RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 CACNA1SQ13698 1873 aa15.96■□□□□ 0.15
LIG1-217ENST00000599165 TNRC6CQ9HCJ0 1690 aaKnown RBP15.95■□□□□ 0.14
LIG1-217ENST00000599165 ARFGEF2Q9Y6D5 1785 aa15.95■□□□□ 0.14
LIG1-217ENST00000599165 DALRD3Q5D0E6 543 aaKnown RBP15.95■□□□□ 0.14
LIG1-217ENST00000599165 SETDB2Q96T68 719 aa15.95■□□□□ 0.14
LIG1-217ENST00000599165 SLX4Q8IY92 1834 aa15.94■□□□□ 0.14
LIG1-217ENST00000599165 ZNF853P0CG23 659 aa15.94■□□□□ 0.14
LIG1-217ENST00000599165 BRIP1Q9BX63 1249 aa15.94■□□□□ 0.14
LIG1-217ENST00000599165 ERBB4Q15303 1308 aa15.94■□□□□ 0.14
LIG1-217ENST00000599165 ANXA1P04083 346 aa15.93■□□□□ 0.14
LIG1-217ENST00000599165 MYL6BP14649 208 aa15.93■□□□□ 0.14
LIG1-217ENST00000599165 PRELPP51888 382 aa15.93■□□□□ 0.14
LIG1-217ENST00000599165 C2CD5Q86YS7 1000 aa15.93■□□□□ 0.14
LIG1-217ENST00000599165 NGEFQ8N5V2 710 aa15.93■□□□□ 0.14
LIG1-217ENST00000599165 FER1L6Q2WGJ9 1857 aa15.93■□□□□ 0.14
LIG1-217ENST00000599165 CCDC88AQ3V6T2 1871 aa15.93■□□□□ 0.14
LIG1-217ENST00000599165 MAP3K15Q6ZN16 1313 aa15.93■□□□□ 0.14
LIG1-217ENST00000599165 ANKRD36CQ5JPF3 1778 aa15.92■□□□□ 0.14
LIG1-217ENST00000599165 ARHGAP27Q6ZUM4 889 aa15.92■□□□□ 0.14
LIG1-217ENST00000599165 NPM2Q86SE8 214 aaKnown RBP15.92■□□□□ 0.14
LIG1-217ENST00000599165 CNBD1Q8NA66 436 aa15.92■□□□□ 0.14
LIG1-217ENST00000599165 ERVV-1B6SEH8 477 aa15.91■□□□□ 0.14
LIG1-217ENST00000599165 EIF2S2P20042 333 aaKnown RBP15.91■□□□□ 0.14
LIG1-217ENST00000599165 CFAP44Q96MT7 982 aa15.91■□□□□ 0.14
LIG1-217ENST00000599165 NIP7Q9Y221 180 aaKnown RBP eCLIP15.91■□□□□ 0.14
LIG1-217ENST00000599165 ZNF652Q9Y2D9 606 aa15.91■□□□□ 0.14
LIG1-217ENST00000599165 UBN2Q6ZU65 1347 aa15.91■□□□□ 0.14
LIG1-217ENST00000599165 ABCC12Q96J65 1359 aa15.9■□□□□ 0.14
LIG1-217ENST00000599165 ZBTB3Q9H5J0 574 aa15.9■□□□□ 0.14
LIG1-217ENST00000599165 MBIPQ9NS73 344 aa15.9■□□□□ 0.14
LIG1-217ENST00000599165 LAS1LQ9Y4W2 734 aaKnown RBP15.9■□□□□ 0.14
LIG1-217ENST00000599165 SENP3-EIF4A1A0A087X0R7 540 aa15.89■□□□□ 0.13
LIG1-217ENST00000599165 KLRG2A4D1S0 409 aaPredicted RBP15.89■□□□□ 0.13
LIG1-217ENST00000599165 H0YIN7 160 aa15.89■□□□□ 0.13
LIG1-217ENST00000599165 SRGNP10124 158 aa15.89■□□□□ 0.13
LIG1-217ENST00000599165 PDE6BP35913 854 aa15.89■□□□□ 0.13
LIG1-217ENST00000599165 NBPF5PQ86XG9 351 aaPredicted RBP15.89■□□□□ 0.13
LIG1-217ENST00000599165 TTLL6Q8N841 843 aa15.89■□□□□ 0.13
LIG1-217ENST00000599165 NECTIN2Q92692 538 aa15.89■□□□□ 0.13
LIG1-217ENST00000599165 RASSF7Q02833 373 aa15.88■□□□□ 0.13
LIG1-217ENST00000599165 ZNF34Q8IZ26 560 aa15.88■□□□□ 0.13
LIG1-217ENST00000599165 FAM177BA6PVY3 158 aa15.87■□□□□ 0.13
LIG1-217ENST00000599165 NFKBIEO00221 500 aa15.87■□□□□ 0.13
LIG1-217ENST00000599165 ST5P78524 1137 aa15.87■□□□□ 0.13
LIG1-217ENST00000599165 C9orf131Q5VYM1 1079 aa15.87■□□□□ 0.13
LIG1-217ENST00000599165 GIGYF2Q6Y7W6 1299 aaKnown RBP15.87■□□□□ 0.13
LIG1-217ENST00000599165 MRS2Q9HD23 443 aa15.87■□□□□ 0.13
LIG1-217ENST00000599165 IFT57Q9NWB7 429 aa15.87■□□□□ 0.13
LIG1-217ENST00000599165 TIAM2Q8IVF5 1701 aa15.87■□□□□ 0.13
LIG1-217ENST00000599165 IBTKQ9P2D0 1353 aaPredicted RBP15.87■□□□□ 0.13
LIG1-217ENST00000599165 DICER1Q9UPY3 1922 aaKnown RBP15.86■□□□□ 0.13
LIG1-217ENST00000599165 ANP32CO43423 234 aa15.86■□□□□ 0.13
LIG1-217ENST00000599165 GPTP24298 496 aa15.86■□□□□ 0.13
LIG1-217ENST00000599165 SUSD4Q5VX71 490 aa15.86■□□□□ 0.13
LIG1-217ENST00000599165 KIF6Q6ZMV9 814 aa15.86■□□□□ 0.13
LIG1-217ENST00000599165 NUTM1Q86Y26 1132 aa15.86■□□□□ 0.13
LIG1-217ENST00000599165 ZNF526Q8TF50 670 aaPredicted RBP15.86■□□□□ 0.13
LIG1-217ENST00000599165 ZNF622Q969S3 477 aaKnown RBP eCLIP15.86■□□□□ 0.138e-7■■□□□ 11.8
LIG1-217ENST00000599165 DDX21Q9NR30 783 aaKnown RBP eCLIP15.86■□□□□ 0.13
LIG1-217ENST00000599165 CHPF2Q9P2E5 772 aa15.86■□□□□ 0.13
LIG1-217ENST00000599165 PDZRN3Q9UPQ7 1066 aa15.86■□□□□ 0.13
LIG1-217ENST00000599165 RIC1Q4ADV7 1423 aa15.85■□□□□ 0.13
LIG1-217ENST00000599165 LAMB2P55268 1798 aa15.85■□□□□ 0.13
LIG1-217ENST00000599165 NTSR2O95665 410 aa15.85■□□□□ 0.13
LIG1-217ENST00000599165 HOXB7P09629 217 aa15.85■□□□□ 0.13
LIG1-217ENST00000599165 DUSP27Q5VZP5 1158 aa15.85■□□□□ 0.13
LIG1-217ENST00000599165 STYK1Q6J9G0 422 aa15.85■□□□□ 0.13
LIG1-217ENST00000599165 TPTE2Q6XPS3 522 aa15.85■□□□□ 0.13
LIG1-217ENST00000599165 COPS6Q7L5N1 327 aa15.85■□□□□ 0.13
LIG1-217ENST00000599165 XAGE3Q8WTP9 111 aa15.85■□□□□ 0.13
LIG1-217ENST00000599165 C7orf43Q8WVR3 580 aa15.85■□□□□ 0.13
LIG1-217ENST00000599165 KIF3CO14782 793 aa15.84■□□□□ 0.13
LIG1-217ENST00000599165 C1QTNF8P60827 252 aa15.84■□□□□ 0.13
LIG1-217ENST00000599165 ERFEQ4G0M1 354 aa15.84■□□□□ 0.13
LIG1-217ENST00000599165 PRPF40BQ6NWY9 871 aaKnown RBP15.84■□□□□ 0.13
LIG1-217ENST00000599165 MASTLQ96GX5 879 aa15.84■□□□□ 0.13
LIG1-217ENST00000599165 SNED1Q8TER0 1413 aa15.84■□□□□ 0.13
LIG1-217ENST00000599165 C21orf2O43822 256 aa15.83■□□□□ 0.12
LIG1-217ENST00000599165 CCDC27Q2M243 656 aa15.83■□□□□ 0.12
LIG1-217ENST00000599165 CRY2Q49AN0 593 aa15.83■□□□□ 0.12
LIG1-217ENST00000599165 HDGFL1Q5TGJ6 251 aa15.83■□□□□ 0.12
LIG1-217ENST00000599165 C3orf67Q6ZVT6 689 aa15.83■□□□□ 0.12
LIG1-217ENST00000599165 WWC1Q8IX03 1113 aa15.83■□□□□ 0.12
LIG1-217ENST00000599165 C8orf58Q8NAV2 365 aa15.83■□□□□ 0.12
LIG1-217ENST00000599165 GPBP1L1Q9HC44 474 aaPredicted RBP15.83■□□□□ 0.12
LIG1-217ENST00000599165 RNF181Q9P0P0 153 aa15.83■□□□□ 0.12
LIG1-217ENST00000599165 NPHP1O15259 732 aa15.82■□□□□ 0.12
LIG1-217ENST00000599165 GNAI1P63096 354 aa15.82■□□□□ 0.12
LIG1-217ENST00000599165 AIMP1Q12904 312 aaKnown RBP15.82■□□□□ 0.12
LIG1-217ENST00000599165 SLC51AQ86UW1 340 aa15.82■□□□□ 0.12
LIG1-217ENST00000599165 ZNF219Q9P2Y4 722 aaPredicted RBP15.82■□□□□ 0.12
LIG1-217ENST00000599165 NPR1P16066 1061 aa15.81■□□□□ 0.12
LIG1-217ENST00000599165 OLFM4Q6UX06 510 aa15.81■□□□□ 0.12
LIG1-217ENST00000599165 DDX60Q8IY21 1712 aaKnown RBP15.81■□□□□ 0.12
LIG1-217ENST00000599165 TSPYL6Q8N831 410 aa15.81■□□□□ 0.12
LIG1-217ENST00000599165 CNKSR1Q969H4 720 aa15.81■□□□□ 0.12
LIG1-217ENST00000599165 ELL2O00472 640 aaPredicted RBP15.8■□□□□ 0.12
LIG1-217ENST00000599165 NCBP3Q53F19 620 aaKnown RBP15.8■□□□□ 0.12
LIG1-217ENST00000599165 TSR2Q969E8 191 aaKnown RBP15.8■□□□□ 0.12
LIG1-217ENST00000599165 NYXQ9GZU5 481 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms