RNA–Protein interactions for RNA: ENST00000596436.5

USHBP1-206, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 487 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-206ENST00000596436 SETDB2Q96T68 719 aa21.17■□□□□ 0.98
USHBP1-206ENST00000596436 CACNA1SQ13698 1873 aa21.16■□□□□ 0.98
USHBP1-206ENST00000596436 SRGNP10124 158 aa21.16■□□□□ 0.98
USHBP1-206ENST00000596436 STYK1Q6J9G0 422 aa21.16■□□□□ 0.98
USHBP1-206ENST00000596436 CCDC24Q8N4L8 307 aa21.16■□□□□ 0.98
USHBP1-206ENST00000596436 CNBD1Q8NA66 436 aa21.16■□□□□ 0.98
USHBP1-206ENST00000596436 USP16Q9Y5T5 823 aa21.16■□□□□ 0.98
USHBP1-206ENST00000596436 RGL2O15211 777 aa21.15■□□□□ 0.98
USHBP1-206ENST00000596436 CLEC4GQ6UXB4 293 aa21.15■□□□□ 0.98
USHBP1-206ENST00000596436 DZIP3Q86Y13 1208 aaKnown RBP21.15■□□□□ 0.98
USHBP1-206ENST00000596436 ZNF330Q9Y3S2 320 aaPredicted RBP21.15■□□□□ 0.98
USHBP1-206ENST00000596436 CNKSR1Q969H4 720 aa21.14■□□□□ 0.97
USHBP1-206ENST00000596436 ERFEQ4G0M1 354 aa21.13■□□□□ 0.97
USHBP1-206ENST00000596436 DPY19L2Q6NUT2 758 aa21.13■□□□□ 0.97
USHBP1-206ENST00000596436 PRPF40BQ6NWY9 871 aaKnown RBP21.13■□□□□ 0.97
USHBP1-206ENST00000596436 TAOK3Q9H2K8 898 aa21.13■□□□□ 0.97
USHBP1-206ENST00000596436 PRAMEF22A3QJZ6 481 aa21.12■□□□□ 0.97
USHBP1-206ENST00000596436 KLRG2A4D1S0 409 aaPredicted RBP21.12■□□□□ 0.97
USHBP1-206ENST00000596436 ST5P78524 1137 aa21.12■□□□□ 0.97
USHBP1-206ENST00000596436 C7orf43Q8WVR3 580 aa21.12■□□□□ 0.97
USHBP1-206ENST00000596436 MASTLQ96GX5 879 aa21.12■□□□□ 0.97
USHBP1-206ENST00000596436 LAMB4A4D0S4 1761 aa21.11■□□□□ 0.97
USHBP1-206ENST00000596436 SNRPA1P09661 255 aaKnown RBP21.11■□□□□ 0.97
USHBP1-206ENST00000596436 COL13A1Q5TAT6 717 aaPredicted RBP21.11■□□□□ 0.97
USHBP1-206ENST00000596436 SOGA3Q5TF21 947 aa21.11■□□□□ 0.97
USHBP1-206ENST00000596436 NPM2Q86SE8 214 aaKnown RBP21.11■□□□□ 0.97
USHBP1-206ENST00000596436 NBPF26B4DH59 902 aa21.1■□□□□ 0.97
USHBP1-206ENST00000596436 HTATSF1O43719 755 aaKnown RBP21.1■□□□□ 0.97
USHBP1-206ENST00000596436 NBPF10Q6P3W6 841 aaKnown RBP21.1■□□□□ 0.97
USHBP1-206ENST00000596436 NBPF15Q8N660 670 aa21.1■□□□□ 0.97
USHBP1-206ENST00000596436 ZNF219Q9P2Y4 722 aaPredicted RBP21.1■□□□□ 0.97
USHBP1-206ENST00000596436 PIP4K2AP48426 406 aaPredicted RBP21.09■□□□□ 0.97
USHBP1-206ENST00000596436 MCM10Q7L590 875 aa21.09■□□□□ 0.97
USHBP1-206ENST00000596436 DLG5Q8TDM6 1919 aa21.09■□□□□ 0.97
USHBP1-206ENST00000596436 ZNF652Q9Y2D9 606 aa21.08■□□□□ 0.97
USHBP1-206ENST00000596436 SCN4AP35499 1836 aa21.08■□□□□ 0.96
USHBP1-206ENST00000596436 NBPF5PQ86XG9 351 aaPredicted RBP21.07■□□□□ 0.96
USHBP1-206ENST00000596436 RTF1Q92541 710 aaKnown RBP21.07■□□□□ 0.96
USHBP1-206ENST00000596436 PLEKHF1Q96S99 279 aa21.07■□□□□ 0.96
USHBP1-206ENST00000596436 KDM3BQ7LBC6 1761 aa21.07■□□□□ 0.96
USHBP1-206ENST00000596436 NPR1P16066 1061 aa21.06■□□□□ 0.96
USHBP1-206ENST00000596436 CCDC184Q52MB2 194 aa21.06■□□□□ 0.96
USHBP1-206ENST00000596436 L3MBTL3Q96JM7 780 aaPredicted RBP21.06■□□□□ 0.96
USHBP1-206ENST00000596436 SNED1Q8TER0 1413 aa21.05■□□□□ 0.96
USHBP1-206ENST00000596436 NPHP1O15259 732 aa21.05■□□□□ 0.96
USHBP1-206ENST00000596436 DDNO94850 711 aaPredicted RBP21.05■□□□□ 0.96
USHBP1-206ENST00000596436 DCTN1Q14203 1278 aa21.05■□□□□ 0.96
USHBP1-206ENST00000596436 CHADLQ6NUI6 762 aa21.05■□□□□ 0.96
USHBP1-206ENST00000596436 ANP32CO43423 234 aa21.04■□□□□ 0.96
USHBP1-206ENST00000596436 CCDC93Q567U6 631 aa21.04■□□□□ 0.96
USHBP1-206ENST00000596436 ADAMTSL1Q8N6G6 1762 aa21.03■□□□□ 0.96
USHBP1-206ENST00000596436 POTEIP0CG38 1075 aa21.03■□□□□ 0.96
USHBP1-206ENST00000596436 POTEJP0CG39 1038 aa21.03■□□□□ 0.96
USHBP1-206ENST00000596436 TAF7Q15545 349 aaPredicted RBP21.03■□□□□ 0.96
USHBP1-206ENST00000596436 TPTE2Q6XPS3 522 aa21.03■□□□□ 0.96
USHBP1-206ENST00000596436 CREBZFQ9NS37 354 aa21.03■□□□□ 0.96
USHBP1-206ENST00000596436 NIP7Q9Y221 180 aaKnown RBP eCLIP21.03■□□□□ 0.96
USHBP1-206ENST00000596436 HSPA1AP0DMV8 641 aaKnown RBP21.02■□□□□ 0.96
USHBP1-206ENST00000596436 HSPA1BP0DMV9 641 aaKnown RBP21.02■□□□□ 0.96
USHBP1-206ENST00000596436 FKBP4Q02790 459 aaKnown RBP eCLIP21.02■□□□□ 0.96
USHBP1-206ENST00000596436 IQCA1LA6NCM1 817 aa21.01■□□□□ 0.95
USHBP1-206ENST00000596436 HLFQ16534 295 aa21.01■□□□□ 0.95
USHBP1-206ENST00000596436 PASKQ96RG2 1323 aa21.01■□□□□ 0.95
USHBP1-206ENST00000596436 NUP98P52948 1817 aa21■□□□□ 0.95
USHBP1-206ENST00000596436 WDR43Q15061 677 aaKnown RBP eCLIP21■□□□□ 0.95
USHBP1-206ENST00000596436 RIC1Q4ADV7 1423 aa21■□□□□ 0.95
USHBP1-206ENST00000596436 CRY2Q49AN0 593 aa20.99■□□□□ 0.95
USHBP1-206ENST00000596436 TAF1DQ9H5J8 278 aaPredicted RBP20.99■□□□□ 0.95
USHBP1-206ENST00000596436 ADAMTS8Q9UP79 889 aa20.99■□□□□ 0.95
USHBP1-206ENST00000596436 ERVV-1B6SEH8 477 aa20.98■□□□□ 0.95
USHBP1-206ENST00000596436 LDHDQ86WU2 507 aa20.98■□□□□ 0.95
USHBP1-206ENST00000596436 CCDC146Q8IYE0 955 aa20.98■□□□□ 0.95
USHBP1-206ENST00000596436 RTKN2Q8IZC4 609 aa20.98■□□□□ 0.95
USHBP1-206ENST00000596436 ZNF541Q9H0D2 1346 aa20.98■□□□□ 0.95
USHBP1-206ENST00000596436 MAPK8IP3Q9UPT6 1336 aa20.98■□□□□ 0.95
USHBP1-206ENST00000596436 IBTKQ9P2D0 1353 aaPredicted RBP20.97■□□□□ 0.95
USHBP1-206ENST00000596436 NFE2L2Q16236 605 aa20.97■□□□□ 0.95
USHBP1-206ENST00000596436 OLFM4Q6UX06 510 aa20.97■□□□□ 0.95
USHBP1-206ENST00000596436 TNS4Q8IZW8 715 aa20.97■□□□□ 0.95
USHBP1-206ENST00000596436 PNNQ9H307 717 aaKnown RBP20.97■□□□□ 0.95
USHBP1-206ENST00000596436 ABCC12Q96J65 1359 aa20.97■□□□□ 0.95
USHBP1-206ENST00000596436 FZD9O00144 591 aa20.96■□□□□ 0.95
USHBP1-206ENST00000596436 NEFMP07197 916 aa20.96■□□□□ 0.95
USHBP1-206ENST00000596436 ALDH1B1P30837 517 aa20.96■□□□□ 0.95
USHBP1-206ENST00000596436 PNISRQ8TF01 805 aaKnown RBP20.96■□□□□ 0.95
USHBP1-206ENST00000596436 ZNF277Q9NRM2 450 aaPredicted RBP20.96■□□□□ 0.95
USHBP1-206ENST00000596436 MIS18AQ9NYP9 233 aa20.96■□□□□ 0.95
USHBP1-206ENST00000596436 CNTNAP1P78357 1384 aa20.96■□□□□ 0.95
USHBP1-206ENST00000596436 ITGBL1O95965 494 aaPredicted RBP20.95■□□□□ 0.94
USHBP1-206ENST00000596436 MAP3K15Q6ZN16 1313 aa20.95■□□□□ 0.94
USHBP1-206ENST00000596436 COL4A5P29400 1685 aa20.94■□□□□ 0.94
USHBP1-206ENST00000596436 EIF4A1P60842 406 aaKnown RBP20.94■□□□□ 0.94
USHBP1-206ENST00000596436 PSMD1Q99460 953 aa20.94■□□□□ 0.94
USHBP1-206ENST00000596436 NYXQ9GZU5 481 aa20.94■□□□□ 0.94
USHBP1-206ENST00000596436 FAM177BA6PVY3 158 aa20.93■□□□□ 0.94
USHBP1-206ENST00000596436 HOXA10P31260 410 aaPredicted RBP20.93■□□□□ 0.94
USHBP1-206ENST00000596436 IARSP41252 1262 aaKnown RBP20.93■□□□□ 0.94
USHBP1-206ENST00000596436 MRS2Q9HD23 443 aa20.93■□□□□ 0.94
USHBP1-206ENST00000596436 MKRN1Q9UHC7 482 aaKnown RBP20.93■□□□□ 0.94
USHBP1-206ENST00000596436 SYNE4Q8N205 404 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms