RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 DZIP3Q86Y13 1208 aaKnown RBP19.81■□□□□ 0.76
TRIM28-205ENST00000595028 ARFGEF1Q9Y6D6 1849 aa19.81■□□□□ 0.76
TRIM28-205ENST00000595028 ANP32CO43423 234 aa19.8■□□□□ 0.76
TRIM28-205ENST00000595028 ANKRD31Q8N7Z5 1873 aa19.79■□□□□ 0.76
TRIM28-205ENST00000595028 SERPINB2P05120 415 aa19.79■□□□□ 0.76
TRIM28-205ENST00000595028 DPEP1P16444 411 aa19.79■□□□□ 0.76
TRIM28-205ENST00000595028 TBC1D9BQ66K14 1250 aa19.79■□□□□ 0.76
TRIM28-205ENST00000595028 BICDL1Q6ZP65 573 aa19.79■□□□□ 0.76
TRIM28-205ENST00000595028 CARMIL3Q8ND23 1372 aa19.79■□□□□ 0.76
TRIM28-205ENST00000595028 C9orf131Q5VYM1 1079 aa19.78■□□□□ 0.76
TRIM28-205ENST00000595028 APAF1O14727 1248 aa19.76■□□□□ 0.75
TRIM28-205ENST00000595028 COL11A2P13942 1736 aaPredicted RBP19.76■□□□□ 0.75
TRIM28-205ENST00000595028 ERBB4Q15303 1308 aa19.76■□□□□ 0.75
TRIM28-205ENST00000595028 NUP98P52948 1817 aa19.75■□□□□ 0.75
TRIM28-205ENST00000595028 CHL1O00533 1208 aa19.75■□□□□ 0.75
TRIM28-205ENST00000595028 RGL2O15211 777 aa19.75■□□□□ 0.75
TRIM28-205ENST00000595028 KCNA3P22001 575 aa19.75■□□□□ 0.75
TRIM28-205ENST00000595028 MRS2Q9HD23 443 aa19.75■□□□□ 0.75
TRIM28-205ENST00000595028 ZNF652Q9Y2D9 606 aa19.75■□□□□ 0.75
TRIM28-205ENST00000595028 CHRNA5P30532 468 aa19.74■□□□□ 0.75
TRIM28-205ENST00000595028 CLEC4GQ6UXB4 293 aa19.74■□□□□ 0.75
TRIM28-205ENST00000595028 RRAGCQ9HB90 399 aa19.74■□□□□ 0.75
TRIM28-205ENST00000595028 KDM2BQ8NHM5 1336 aa19.74■□□□□ 0.75
TRIM28-205ENST00000595028 HSPA1AP0DMV8 641 aaKnown RBP19.73■□□□□ 0.75
TRIM28-205ENST00000595028 HSPA1BP0DMV9 641 aaKnown RBP19.73■□□□□ 0.75
TRIM28-205ENST00000595028 SETDB2Q96T68 719 aa19.73■□□□□ 0.75
TRIM28-205ENST00000595028 TNRC6CQ9HCJ0 1690 aaKnown RBP19.72■□□□□ 0.75
TRIM28-205ENST00000595028 PRR5LQ6MZQ0 368 aa19.72■□□□□ 0.75
TRIM28-205ENST00000595028 PIM2Q9P1W9 311 aa19.72■□□□□ 0.75
TRIM28-205ENST00000595028 LAS1LQ9Y4W2 734 aaKnown RBP19.72■□□□□ 0.75
TRIM28-205ENST00000595028 MYL6BP14649 208 aa19.71■□□□□ 0.75
TRIM28-205ENST00000595028 CNBD1Q8NA66 436 aa19.71■□□□□ 0.75
TRIM28-205ENST00000595028 CFAP44Q96MT7 982 aa19.71■□□□□ 0.75
TRIM28-205ENST00000595028 DALRD3Q5D0E6 543 aaKnown RBP19.7■□□□□ 0.74
TRIM28-205ENST00000595028 KIF6Q6ZMV9 814 aa19.7■□□□□ 0.74
TRIM28-205ENST00000595028 NGEFQ8N5V2 710 aa19.7■□□□□ 0.74
TRIM28-205ENST00000595028 SMC1BQ8NDV3 1235 aa19.7■□□□□ 0.74
TRIM28-205ENST00000595028 EIF2S2P20042 333 aaKnown RBP19.69■□□□□ 0.74
TRIM28-205ENST00000595028 CALD1Q05682 793 aaKnown RBP19.69■□□□□ 0.74
TRIM28-205ENST00000595028 HLFQ16534 295 aa19.69■□□□□ 0.74
TRIM28-205ENST00000595028 KRT24Q2M2I5 525 aa19.69■□□□□ 0.74
TRIM28-205ENST00000595028 TTLL7Q6ZT98 887 aa19.69■□□□□ 0.74
TRIM28-205ENST00000595028 LRP10Q7Z4F1 713 aa19.69■□□□□ 0.74
TRIM28-205ENST00000595028 IFT57Q9NWB7 429 aa19.69■□□□□ 0.74
TRIM28-205ENST00000595028 RNF181Q9P0P0 153 aa19.69■□□□□ 0.74
TRIM28-205ENST00000595028 MAP3K15Q6ZN16 1313 aa19.69■□□□□ 0.74
TRIM28-205ENST00000595028 ANKRD36CQ5JPF3 1778 aa19.68■□□□□ 0.74
TRIM28-205ENST00000595028 ERVV-1B6SEH8 477 aa19.68■□□□□ 0.74
TRIM28-205ENST00000595028 ZNF853P0CG23 659 aa19.68■□□□□ 0.74
TRIM28-205ENST00000595028 PDIA6Q15084 440 aa19.68■□□□□ 0.74
TRIM28-205ENST00000595028 C2CD5Q86YS7 1000 aa19.68■□□□□ 0.74
TRIM28-205ENST00000595028 MBIPQ9NS73 344 aa19.68■□□□□ 0.74
TRIM28-205ENST00000595028 NIP7Q9Y221 180 aaKnown RBP eCLIP19.68■□□□□ 0.74
TRIM28-205ENST00000595028 ARFGEF2Q9Y6D5 1785 aa19.67■□□□□ 0.74
TRIM28-205ENST00000595028 NPHP1O15259 732 aa19.67■□□□□ 0.74
TRIM28-205ENST00000595028 HOXB7P09629 217 aa19.67■□□□□ 0.74
TRIM28-205ENST00000595028 ST5P78524 1137 aa19.67■□□□□ 0.74
TRIM28-205ENST00000595028 PROSER3Q2NL68 480 aa19.67■□□□□ 0.74
TRIM28-205ENST00000595028 NBPF5PQ86XG9 351 aaPredicted RBP19.67■□□□□ 0.74
TRIM28-205ENST00000595028 CCDC24Q8N4L8 307 aa19.67■□□□□ 0.74
TRIM28-205ENST00000595028 BRIP1Q9BX63 1249 aa19.67■□□□□ 0.74
TRIM28-205ENST00000595028 SBF1O95248 1867 aa19.67■□□□□ 0.74
TRIM28-205ENST00000595028 CACNA1SQ13698 1873 aa19.67■□□□□ 0.74
TRIM28-205ENST00000595028 SLC34A2O95436 690 aa19.66■□□□□ 0.74
TRIM28-205ENST00000595028 PDE6BP35913 854 aa19.66■□□□□ 0.74
TRIM28-205ENST00000595028 GNAI1P63096 354 aa19.66■□□□□ 0.74
TRIM28-205ENST00000595028 PDZRN3Q9UPQ7 1066 aa19.66■□□□□ 0.74
TRIM28-205ENST00000595028 H0YIN7 160 aa19.65■□□□□ 0.74
TRIM28-205ENST00000595028 ANXA1P04083 346 aa19.65■□□□□ 0.74
TRIM28-205ENST00000595028 NECTIN2Q92692 538 aa19.65■□□□□ 0.74
TRIM28-205ENST00000595028 ZBTB3Q9H5J0 574 aa19.65■□□□□ 0.74
TRIM28-205ENST00000595028 IBTKQ9P2D0 1353 aaPredicted RBP19.65■□□□□ 0.74
TRIM28-205ENST00000595028 CCDC27Q2M243 656 aa19.64■□□□□ 0.73
TRIM28-205ENST00000595028 HDGFL1Q5TGJ6 251 aa19.64■□□□□ 0.73
TRIM28-205ENST00000595028 TTLL6Q8N841 843 aa19.63■□□□□ 0.73
TRIM28-205ENST00000595028 DDX21Q9NR30 783 aaKnown RBP eCLIP19.63■□□□□ 0.73
TRIM28-205ENST00000595028 UBN2Q6ZU65 1347 aa19.62■□□□□ 0.73
TRIM28-205ENST00000595028 DUSP27Q5VZP5 1158 aa19.62■□□□□ 0.73
TRIM28-205ENST00000595028 CHPF2Q9P2E5 772 aa19.62■□□□□ 0.73
TRIM28-205ENST00000595028 ABCC12Q96J65 1359 aa19.61■□□□□ 0.73
TRIM28-205ENST00000595028 NCBP3Q53F19 620 aaKnown RBP19.61■□□□□ 0.73
TRIM28-205ENST00000595028 TPTE2Q6XPS3 522 aa19.61■□□□□ 0.73
TRIM28-205ENST00000595028 GIGYF2Q6Y7W6 1299 aaKnown RBP19.61■□□□□ 0.73
TRIM28-205ENST00000595028 RIC1Q4ADV7 1423 aa19.6■□□□□ 0.73
TRIM28-205ENST00000595028 FAM177BA6PVY3 158 aa19.6■□□□□ 0.73
TRIM28-205ENST00000595028 GPTP24298 496 aa19.6■□□□□ 0.73
TRIM28-205ENST00000595028 WWC1Q8IX03 1113 aa19.6■□□□□ 0.73
TRIM28-205ENST00000595028 XAGE3Q8WTP9 111 aa19.6■□□□□ 0.73
TRIM28-205ENST00000595028 ZNF622Q969S3 477 aaKnown RBP eCLIP19.6■□□□□ 0.73
TRIM28-205ENST00000595028 SLX4Q8IY92 1834 aa19.6■□□□□ 0.73
TRIM28-205ENST00000595028 FER1L6Q2WGJ9 1857 aa19.59■□□□□ 0.73
TRIM28-205ENST00000595028 SRGNP10124 158 aa19.59■□□□□ 0.73
TRIM28-205ENST00000595028 COPS6Q7L5N1 327 aa19.59■□□□□ 0.73
TRIM28-205ENST00000595028 ZNF34Q8IZ26 560 aa19.59■□□□□ 0.73
TRIM28-205ENST00000595028 NYXQ9GZU5 481 aa19.59■□□□□ 0.73
TRIM28-205ENST00000595028 STYK1Q6J9G0 422 aa19.58■□□□□ 0.72
TRIM28-205ENST00000595028 DBF4Q9UBU7 674 aaPredicted RBP19.58■□□□□ 0.72
TRIM28-205ENST00000595028 IL16Q14005 1332 aa19.57■□□□□ 0.72
TRIM28-205ENST00000595028 KLRG2A4D1S0 409 aaPredicted RBP19.57■□□□□ 0.72
TRIM28-205ENST00000595028 AIMP1Q12904 312 aaKnown RBP19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms