RNA–Protein interactions for RNA: ENST00000592533.5

ZNF540-210, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 2 BASIC

Gene ZNF540, Length 3,147 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-210ENST00000592533 SNRKQ9NRH2 765 aa13.99□□□□□ -0.17
ZNF540-210ENST00000592533 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.99□□□□□ -0.17
ZNF540-210ENST00000592533 C5P01031 1676 aa13.99□□□□□ -0.17
ZNF540-210ENST00000592533 BTBD11A6QL63 1104 aa13.99□□□□□ -0.17
ZNF540-210ENST00000592533 ZSCAN22P10073 491 aaPredicted RBP13.99□□□□□ -0.17
ZNF540-210ENST00000592533 AK2P54819 239 aa13.99□□□□□ -0.17
ZNF540-210ENST00000592533 FAM184AQ8NB25 1140 aa13.99□□□□□ -0.17
ZNF540-210ENST00000592533 RUFY2Q8WXA3 655 aa13.99□□□□□ -0.17
ZNF540-210ENST00000592533 KCNQ3O43525 872 aa13.98□□□□□ -0.17
ZNF540-210ENST00000592533 MST1RQ04912 1400 aa13.98□□□□□ -0.17
ZNF540-210ENST00000592533 RNMTO43148 476 aaKnown RBP13.98□□□□□ -0.17
ZNF540-210ENST00000592533 TEFQ10587 303 aa13.98□□□□□ -0.17
ZNF540-210ENST00000592533 UVSSAQ2YD98 709 aa13.98□□□□□ -0.17
ZNF540-210ENST00000592533 KIAA1211Q6ZU35 1233 aa13.98□□□□□ -0.17
ZNF540-210ENST00000592533 NOL8Q76FK4 1167 aaKnown RBP13.98□□□□□ -0.17
ZNF540-210ENST00000592533 RGPD5Q99666 1765 aa13.98□□□□□ -0.17
ZNF540-210ENST00000592533 ABCC6O95255 1503 aa13.98□□□□□ -0.17
ZNF540-210ENST00000592533 MAP4K4O95819 1239 aaPredicted RBP13.97□□□□□ -0.17
ZNF540-210ENST00000592533 VPS53Q5VIR6 699 aa13.97□□□□□ -0.17
ZNF540-210ENST00000592533 ZNF530Q6P9A1 599 aaPredicted RBP13.97□□□□□ -0.17
ZNF540-210ENST00000592533 KSR2Q6VAB6 950 aa13.97□□□□□ -0.17
ZNF540-210ENST00000592533 ECHDC1Q9NTX5 307 aa13.97□□□□□ -0.17
ZNF540-210ENST00000592533 GADD45BO75293 160 aaPredicted RBP13.97□□□□□ -0.17
ZNF540-210ENST00000592533 CLASRPQ8N2M8 674 aaKnown RBP13.97□□□□□ -0.17
ZNF540-210ENST00000592533 HYPKQ9NX55 129 aa13.97□□□□□ -0.17
ZNF540-210ENST00000592533 KIF1AQ12756 1690 aa13.97□□□□□ -0.17
ZNF540-210ENST00000592533 GIGYF1O75420 1035 aaPredicted RBP13.97□□□□□ -0.17
ZNF540-210ENST00000592533 LETM1O95202 739 aaPredicted RBP13.97□□□□□ -0.17
ZNF540-210ENST00000592533 GPATCH3Q96I76 525 aa13.97□□□□□ -0.17
ZNF540-210ENST00000592533 STX6O43752 255 aa13.96□□□□□ -0.17
ZNF540-210ENST00000592533 CCDC183Q5T5S1 534 aa13.96□□□□□ -0.17
ZNF540-210ENST00000592533 ZSCAN31Q96LW9 406 aaPredicted RBP13.96□□□□□ -0.17
ZNF540-210ENST00000592533 ZSWIM6Q9HCJ5 1215 aa13.96□□□□□ -0.17
ZNF540-210ENST00000592533 CWC27Q6UX04 472 aaKnown RBP13.96□□□□□ -0.18
ZNF540-210ENST00000592533 SH2B1Q9NRF2 756 aaPredicted RBP13.96□□□□□ -0.18
ZNF540-210ENST00000592533 ATP6V1DQ9Y5K8 247 aa13.96□□□□□ -0.18
ZNF540-210ENST00000592533 SYT1P21579 422 aa13.95□□□□□ -0.18
ZNF540-210ENST00000592533 UBE2HP62256 183 aa13.95□□□□□ -0.18
ZNF540-210ENST00000592533 CSPP1Q1MSJ5 1256 aa13.95□□□□□ -0.18
ZNF540-210ENST00000592533 EVI5LQ96CN4 794 aa13.95□□□□□ -0.18
ZNF540-210ENST00000592533 DIAPH3Q9NSV4 1193 aa13.95□□□□□ -0.18
ZNF540-210ENST00000592533 JCADQ9P266 1359 aa13.95□□□□□ -0.18
ZNF540-210ENST00000592533 F13A1P00488 732 aa13.95□□□□□ -0.18
ZNF540-210ENST00000592533 PDIA4P13667 645 aaKnown RBP13.95□□□□□ -0.18
ZNF540-210ENST00000592533 ARHGEF25Q86VW2 580 aa13.95□□□□□ -0.18
ZNF540-210ENST00000592533 MAP3K2Q9Y2U5 619 aa13.95□□□□□ -0.18
ZNF540-210ENST00000592533 ALS2Q96Q42 1657 aa13.94□□□□□ -0.18
ZNF540-210ENST00000592533 HIP1O00291 1037 aa13.94□□□□□ -0.18
ZNF540-210ENST00000592533 NECTIN1Q15223 517 aa13.94□□□□□ -0.18
ZNF540-210ENST00000592533 CASTP20810 708 aaKnown RBP13.94□□□□□ -0.18
ZNF540-210ENST00000592533 C14orf37Q86TY3 774 aa13.94□□□□□ -0.18
ZNF540-210ENST00000592533 LINS1Q8NG48 757 aa13.94□□□□□ -0.18
ZNF540-210ENST00000592533 SPG7Q9UQ90 795 aa13.94□□□□□ -0.18
ZNF540-210ENST00000592533 CCDC171Q6TFL3 1326 aa13.93□□□□□ -0.18
ZNF540-210ENST00000592533 PTH1RQ03431 593 aa13.93□□□□□ -0.18
ZNF540-210ENST00000592533 MPRIPQ6WCQ1 1025 aa13.93□□□□□ -0.18
ZNF540-210ENST00000592533 SMC3Q9UQE7 1217 aa13.93□□□□□ -0.18
ZNF540-210ENST00000592533 OS9Q13438 667 aaPredicted RBP13.93□□□□□ -0.18
ZNF540-210ENST00000592533 HSP90AA2PQ14568 343 aaPredicted RBP13.93□□□□□ -0.18
ZNF540-210ENST00000592533 C1orf141Q5JVX7 400 aa13.93□□□□□ -0.18
ZNF540-210ENST00000592533 GDPD2Q9HCC8 539 aa13.93□□□□□ -0.18
ZNF540-210ENST00000592533 C9orf78Q9NZ63 289 aaPredicted RBP13.93□□□□□ -0.18
ZNF540-210ENST00000592533 CNPY2Q9Y2B0 182 aa13.93□□□□□ -0.18
ZNF540-210ENST00000592533 AFDNP55196 1824 aaKnown RBP13.93□□□□□ -0.18
ZNF540-210ENST00000592533 PLEKHG2Q9H7P9 1386 aa13.93□□□□□ -0.18
ZNF540-210ENST00000592533 ANXA1P04083 346 aa13.93□□□□□ -0.18
ZNF540-210ENST00000592533 PSME1Q06323 249 aa13.93□□□□□ -0.18
ZNF540-210ENST00000592533 PROSER3Q2NL68 480 aa13.93□□□□□ -0.18
ZNF540-210ENST00000592533 LRRC59Q96AG4 307 aaKnown RBP13.93□□□□□ -0.18
ZNF540-210ENST00000592533 KAZALD1Q96I82 304 aa13.93□□□□□ -0.18
ZNF540-210ENST00000592533 ALDH8A1Q9H2A2 487 aaPredicted RBP13.93□□□□□ -0.18
ZNF540-210ENST00000592533 IFIT2P09913 472 aaKnown RBP13.92□□□□□ -0.18
ZNF540-210ENST00000592533 PDRG1Q9NUG6 133 aa13.92□□□□□ -0.18
ZNF540-210ENST00000592533 CYP46A1Q9Y6A2 500 aa13.92□□□□□ -0.18
ZNF540-210ENST00000592533 GRM8O00222 908 aa13.92□□□□□ -0.18
ZNF540-210ENST00000592533 LARGE1O95461 756 aa13.92□□□□□ -0.18
ZNF540-210ENST00000592533 MAP4K1Q92918 833 aa13.92□□□□□ -0.18
ZNF540-210ENST00000592533 DDX21Q9NR30 783 aaKnown RBP eCLIP13.92□□□□□ -0.18
ZNF540-210ENST00000592533 MTMR6Q9Y217 621 aa13.92□□□□□ -0.18
ZNF540-210ENST00000592533 RNF214Q8ND24 703 aa13.91□□□□□ -0.18
ZNF540-210ENST00000592533 MED23Q9ULK4 1368 aa13.91□□□□□ -0.18
ZNF540-210ENST00000592533 GCP02774 474 aa13.91□□□□□ -0.18
ZNF540-210ENST00000592533 ST3GAL1Q11201 340 aa13.91□□□□□ -0.18
ZNF540-210ENST00000592533 ADCK5Q3MIX3 580 aa13.91□□□□□ -0.18
ZNF540-210ENST00000592533 ANKLE2Q86XL3 938 aa13.91□□□□□ -0.18
ZNF540-210ENST00000592533 FUCA2Q9BTY2 467 aa13.91□□□□□ -0.18
ZNF540-210ENST00000592533 NPHP4O75161 1426 aaPredicted RBP13.91□□□□□ -0.18
ZNF540-210ENST00000592533 LAMB4A4D0S4 1761 aa13.91□□□□□ -0.18
ZNF540-210ENST00000592533 ARFGEF2Q9Y6D5 1785 aa13.91□□□□□ -0.18
ZNF540-210ENST00000592533 SASH1O94885 1247 aa13.9□□□□□ -0.18
ZNF540-210ENST00000592533 PDIA6Q15084 440 aa13.9□□□□□ -0.18
ZNF540-210ENST00000592533 JAKMIP1Q96N16 626 aaKnown RBP13.9□□□□□ -0.18
ZNF540-210ENST00000592533 COL15A1P39059 1388 aa13.9□□□□□ -0.18
ZNF540-210ENST00000592533 DDX58O95786 925 aaKnown RBP13.9□□□□□ -0.18
ZNF540-210ENST00000592533 GJB2P29033 226 aa13.9□□□□□ -0.18
ZNF540-210ENST00000592533 PRPF40BQ6NWY9 871 aaKnown RBP13.9□□□□□ -0.18
ZNF540-210ENST00000592533 SUCLG2Q96I99 432 aa13.9□□□□□ -0.18
ZNF540-210ENST00000592533 ESCO1Q5FWF5 840 aa13.9□□□□□ -0.18
ZNF540-210ENST00000592533 AACSQ86V21 672 aa13.9□□□□□ -0.18
ZNF540-210ENST00000592533 PA2G4Q9UQ80 394 aaKnown RBP13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms