RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 SPRYD7Q5W111 196 aa12.03□□□□□ -0.48
SMAD4-209ENST00000589941 UNC93B1Q9H1C4 597 aa12.03□□□□□ -0.48
SMAD4-209ENST00000589941 CCDC144AA2RUR9 1427 aa12.03□□□□□ -0.48
SMAD4-209ENST00000589941 ZBTB24O43167 697 aaPredicted RBP12.02□□□□□ -0.49
SMAD4-209ENST00000589941 EPS8L1Q8TE68 723 aa12.02□□□□□ -0.49
SMAD4-209ENST00000589941 TRIM37O94972 964 aa12.01□□□□□ -0.49
SMAD4-209ENST00000589941 TRIM32Q13049 653 aa12.01□□□□□ -0.49
SMAD4-209ENST00000589941 NR6A1Q15406 480 aa12.01□□□□□ -0.49
SMAD4-209ENST00000589941 SNRKQ9NRH2 765 aa12.01□□□□□ -0.49
SMAD4-209ENST00000589941 PARD3Q8TEW0 1356 aa12.01□□□□□ -0.49
SMAD4-209ENST00000589941 KCNQ2O43526 872 aa12□□□□□ -0.49
SMAD4-209ENST00000589941 SPON1Q9HCB6 807 aa12□□□□□ -0.49
SMAD4-209ENST00000589941 ZNF326Q5BKZ1 582 aaKnown RBP11.99□□□□□ -0.49
SMAD4-209ENST00000589941 BANK1Q8NDB2 785 aa11.99□□□□□ -0.49
SMAD4-209ENST00000589941 PEAK1Q9H792 1746 aa11.99□□□□□ -0.49
SMAD4-209ENST00000589941 GOLGB1Q14789 3259 aaKnown RBP11.98□□□□□ -0.49
SMAD4-209ENST00000589941 PHRF1Q9P1Y6 1649 aaKnown RBP11.98□□□□□ -0.49
SMAD4-209ENST00000589941 FAM83GA6ND36 823 aa11.98□□□□□ -0.49
SMAD4-209ENST00000589941 SKOR1P84550 965 aa11.98□□□□□ -0.49
SMAD4-209ENST00000589941 ZNF598Q86UK7 904 aaKnown RBP11.98□□□□□ -0.49
SMAD4-209ENST00000589941 PDGFDQ9GZP0 370 aaPredicted RBP11.98□□□□□ -0.49
SMAD4-209ENST00000589941 DLC1Q96QB1 1528 aa11.97□□□□□ -0.49
SMAD4-209ENST00000589941 LRPPRCP42704 1394 aaKnown RBP11.97□□□□□ -0.49
SMAD4-209ENST00000589941 APBA3O96018 575 aa11.97□□□□□ -0.49
SMAD4-209ENST00000589941 LINC01559Q495D7 138 aa11.97□□□□□ -0.49
SMAD4-209ENST00000589941 ZNF697Q5TEC3 545 aa11.97□□□□□ -0.49
SMAD4-209ENST00000589941 MTMR14Q8NCE2 650 aa11.97□□□□□ -0.49
SMAD4-209ENST00000589941 BAP1Q92560 729 aa11.97□□□□□ -0.49
SMAD4-209ENST00000589941 TRIM34Q9BYJ4 488 aa11.97□□□□□ -0.49
SMAD4-209ENST00000589941 PLEKHH1Q9ULM0 1364 aa11.96□□□□□ -0.49
SMAD4-209ENST00000589941 CD2BP2O95400 341 aaKnown RBP11.96□□□□□ -0.49
SMAD4-209ENST00000589941 PARP4Q9UKK3 1724 aaKnown RBP11.95□□□□□ -0.5
SMAD4-209ENST00000589941 SPATA31A5Q5VU36 1347 aa11.95□□□□□ -0.5
SMAD4-209ENST00000589941 SPATA31A7Q8IWB4 1347 aa11.95□□□□□ -0.5
SMAD4-209ENST00000589941 BTG4Q9NY30 223 aa11.95□□□□□ -0.5
SMAD4-209ENST00000589941 NRXN1Q9ULB1 1477 aa11.95□□□□□ -0.5
SMAD4-209ENST00000589941 RRBP1Q9P2E9 1410 aaKnown RBP11.94□□□□□ -0.5
SMAD4-209ENST00000589941 SH3BP2P78314 561 aa11.94□□□□□ -0.5
SMAD4-209ENST00000589941 TECPR2O15040 1411 aa11.94□□□□□ -0.5
SMAD4-209ENST00000589941 WNK3Q9BYP7 1800 aa11.93□□□□□ -0.5
SMAD4-209ENST00000589941 GIGYF1O75420 1035 aaPredicted RBP11.93□□□□□ -0.5
SMAD4-209ENST00000589941 TRIM67Q6ZTA4 783 aa11.93□□□□□ -0.5
SMAD4-209ENST00000589941 KRT28Q7Z3Y7 464 aa11.93□□□□□ -0.5
SMAD4-209ENST00000589941 PKD2L1Q9P0L9 805 aa11.92□□□□□ -0.5
SMAD4-209ENST00000589941 LRRC37A3O60309 1634 aa11.92□□□□□ -0.5
SMAD4-209ENST00000589941 ZBTB7AO95365 584 aa11.91□□□□□ -0.5
SMAD4-209ENST00000589941 ZNF511Q8NB15 262 aa11.91□□□□□ -0.5
SMAD4-209ENST00000589941 SBNO1A3KN83 1393 aa11.91□□□□□ -0.5
SMAD4-209ENST00000589941 GDF9O60383 454 aa11.9□□□□□ -0.5
SMAD4-209ENST00000589941 WNT7BP56706 349 aa11.9□□□□□ -0.5
SMAD4-209ENST00000589941 FOXC1Q12948 553 aa11.9□□□□□ -0.5
SMAD4-209ENST00000589941 MCM6Q14566 821 aa11.9□□□□□ -0.5
SMAD4-209ENST00000589941 NBPF8Q3BBV2 869 aa11.9□□□□□ -0.5
SMAD4-209ENST00000589941 NBPF14Q5TI25 921 aa11.9□□□□□ -0.5
SMAD4-209ENST00000589941 FOXJ1Q92949 421 aa11.9□□□□□ -0.5
SMAD4-209ENST00000589941 FHDC1Q9C0D6 1143 aaPredicted RBP11.9□□□□□ -0.5
SMAD4-209ENST00000589941 FKBPLQ9UIM3 349 aa11.9□□□□□ -0.5
SMAD4-209ENST00000589941 ARHGEF10O15013 1369 aa11.9□□□□□ -0.5
SMAD4-209ENST00000589941 NUP155O75694 1391 aa11.9□□□□□ -0.5
SMAD4-209ENST00000589941 FAM196AQ6ZSG2 479 aa11.89□□□□□ -0.51
SMAD4-209ENST00000589941 WAPLQ7Z5K2 1190 aa11.89□□□□□ -0.51
SMAD4-209ENST00000589941 AKAP12Q02952 1782 aa11.89□□□□□ -0.51
SMAD4-209ENST00000589941 TNFRSF10AO00220 468 aa11.88□□□□□ -0.51
SMAD4-209ENST00000589941 RC3H1Q5TC82 1133 aaKnown RBP11.88□□□□□ -0.51
SMAD4-209ENST00000589941 LMO7Q8WWI1 1683 aa11.87□□□□□ -0.51
SMAD4-209ENST00000589941 SPATA31A1Q5TZJ5 1347 aa11.87□□□□□ -0.51
SMAD4-209ENST00000589941 GPR37L1O60883 481 aa11.87□□□□□ -0.51
SMAD4-209ENST00000589941 C4orf48Q5BLP8 95 aa11.87□□□□□ -0.51
SMAD4-209ENST00000589941 ARMC2Q8NEN0 867 aa11.87□□□□□ -0.51
SMAD4-209ENST00000589941 SYT17Q9BSW7 474 aa11.87□□□□□ -0.51
SMAD4-209ENST00000589941 TOPAZ1Q8N9V7 1692 aa11.87□□□□□ -0.51
SMAD4-209ENST00000589941 PAPPAQ13219 1627 aa11.86□□□□□ -0.51
SMAD4-209ENST00000589941 WNT7AO00755 349 aa11.86□□□□□ -0.51
SMAD4-209ENST00000589941 TUBGCP6Q96RT7 1819 aa11.86□□□□□ -0.51
SMAD4-209ENST00000589941 COL24A1Q17RW2 1714 aa11.86□□□□□ -0.51
SMAD4-209ENST00000589941 MRGPRX2Q96LB1 330 aa11.85□□□□□ -0.51
SMAD4-209ENST00000589941 FAM50AQ14320 339 aaKnown RBP11.84□□□□□ -0.51
SMAD4-209ENST00000589941 SH3BP5LQ7L8J4 393 aa11.84□□□□□ -0.51
SMAD4-209ENST00000589941 OCSTAMPQ9BR26 566 aa11.84□□□□□ -0.51
SMAD4-209ENST00000589941 TBC1D2BQ9UPU7 963 aa11.84□□□□□ -0.51
SMAD4-209ENST00000589941 PTF1AQ7RTS3 328 aa11.83□□□□□ -0.52
SMAD4-209ENST00000589941 SH3RF1Q7Z6J0 888 aa11.83□□□□□ -0.52
SMAD4-209ENST00000589941 STK26Q9P289 416 aa11.83□□□□□ -0.52
SMAD4-209ENST00000589941 PDZRN3Q9UPQ7 1066 aa11.83□□□□□ -0.52
SMAD4-209ENST00000589941 PRR20EP86478 221 aa11.82□□□□□ -0.52
SMAD4-209ENST00000589941 PRR20CP86479 221 aa11.82□□□□□ -0.52
SMAD4-209ENST00000589941 PRR20DP86480 221 aa11.82□□□□□ -0.52
SMAD4-209ENST00000589941 PRR20BP86481 221 aa11.82□□□□□ -0.52
SMAD4-209ENST00000589941 PRR20AP86496 221 aa11.82□□□□□ -0.52
SMAD4-209ENST00000589941 PDXDC2PQ6P474 469 aa11.82□□□□□ -0.52
SMAD4-209ENST00000589941 EHBP1Q8NDI1 1231 aa11.82□□□□□ -0.52
SMAD4-209ENST00000589941 GPKOWQ92917 476 aaPredicted RBP eCLIP11.82□□□□□ -0.52
SMAD4-209ENST00000589941 NDUFB9Q9Y6M9 179 aa11.82□□□□□ -0.52
SMAD4-209ENST00000589941 SSH2Q76I76 1423 aa11.82□□□□□ -0.52
SMAD4-209ENST00000589941 ZC3H4Q9UPT8 1303 aaKnown RBP11.82□□□□□ -0.52
SMAD4-209ENST00000589941 KIAA0232Q92628 1395 aa11.81□□□□□ -0.52
SMAD4-209ENST00000589941 SIAH2O43255 324 aa11.81□□□□□ -0.52
SMAD4-209ENST00000589941 AGERQ15109 404 aa11.81□□□□□ -0.52
SMAD4-209ENST00000589941 USP35Q9P2H5 1018 aa11.81□□□□□ -0.52
SMAD4-209ENST00000589941 ROCK1Q13464 1354 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms