RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 AOX1Q06278 1338 aa13.05□□□□□ -0.32
ZNF540-208ENST00000589857 CHD4Q14839 1912 aa13.05□□□□□ -0.32
ZNF540-208ENST00000589857 RAB11FIP3O75154 756 aa13.04□□□□□ -0.32
ZNF540-208ENST00000589857 UBTFL1P0CB47 393 aaPredicted RBP13.04□□□□□ -0.32
ZNF540-208ENST00000589857 ATP8B2P98198 1209 aa13.04□□□□□ -0.32
ZNF540-208ENST00000589857 ZNF827Q17R98 1081 aa13.04□□□□□ -0.32
ZNF540-208ENST00000589857 NBPF6Q5VWK0 638 aa13.04□□□□□ -0.32
ZNF540-208ENST00000589857 FLAD1Q8NFF5 587 aa13.04□□□□□ -0.32
ZNF540-208ENST00000589857 NBPF4Q96M43 638 aa13.04□□□□□ -0.32
ZNF540-208ENST00000589857 LRRCC1Q9C099 1032 aa13.04□□□□□ -0.32
ZNF540-208ENST00000589857 NHSQ6T4R5 1651 aa13.03□□□□□ -0.32
ZNF540-208ENST00000589857 DDX11L8A8MPP1 907 aa13.03□□□□□ -0.32
ZNF540-208ENST00000589857 EIF4A1P60842 406 aaKnown RBP13.03□□□□□ -0.32
ZNF540-208ENST00000589857 G2E3Q7L622 706 aa13.03□□□□□ -0.32
ZNF540-208ENST00000589857 LRRC4BQ9NT99 713 aa13.03□□□□□ -0.32
ZNF540-208ENST00000589857 FAM208AQ9UK61 1670 aaKnown RBP13.02□□□□□ -0.32
ZNF540-208ENST00000589857 WNK3Q9BYP7 1800 aa13.02□□□□□ -0.32
ZNF540-208ENST00000589857 BTBD11A6QL63 1104 aa13.02□□□□□ -0.33
ZNF540-208ENST00000589857 EPB41L2O43491 1005 aaKnown RBP13.02□□□□□ -0.33
ZNF540-208ENST00000589857 FRAT2O75474 233 aaPredicted RBP13.02□□□□□ -0.33
ZNF540-208ENST00000589857 HSP90AA1P07900 732 aaKnown RBP13.02□□□□□ -0.33
ZNF540-208ENST00000589857 USHBP1Q8N6Y0 703 aa13.02□□□□□ -0.33
ZNF540-208ENST00000589857 UTRNP46939 3433 aa13.01□□□□□ -0.33
ZNF540-208ENST00000589857 F6X3S4 739 aa13.01□□□□□ -0.33
ZNF540-208ENST00000589857 K7ELQ4 463 aaPredicted RBP13.01□□□□□ -0.33
ZNF540-208ENST00000589857 RNMTO43148 476 aaKnown RBP13.01□□□□□ -0.33
ZNF540-208ENST00000589857 GSPT1P15170 499 aaKnown RBP13.01□□□□□ -0.33
ZNF540-208ENST00000589857 MCCP23508 829 aa13.01□□□□□ -0.33
ZNF540-208ENST00000589857 GBP4Q96PP9 640 aa13.01□□□□□ -0.33
ZNF540-208ENST00000589857 GPBP1L1Q9HC44 474 aaPredicted RBP13.01□□□□□ -0.33
ZNF540-208ENST00000589857 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.01□□□□□ -0.33
ZNF540-208ENST00000589857 DBF4Q9UBU7 674 aaPredicted RBP13.01□□□□□ -0.33
ZNF540-208ENST00000589857 CCNL1Q9UK58 526 aaPredicted RBP13.01□□□□□ -0.33
ZNF540-208ENST00000589857 PNPLA7Q6ZV29 1317 aa13.01□□□□□ -0.33
ZNF540-208ENST00000589857 LTN1O94822 1766 aa13.01□□□□□ -0.33
ZNF540-208ENST00000589857 IBTKQ9P2D0 1353 aaPredicted RBP13□□□□□ -0.33
ZNF540-208ENST00000589857 ERC2O15083 957 aa13□□□□□ -0.33
ZNF540-208ENST00000589857 ALDH1L1O75891 902 aa13□□□□□ -0.33
ZNF540-208ENST00000589857 DDX58O95786 925 aaKnown RBP13□□□□□ -0.33
ZNF540-208ENST00000589857 PRIM1P49642 420 aaKnown RBP13□□□□□ -0.33
ZNF540-208ENST00000589857 DNAAF4Q8WXU2 420 aa13□□□□□ -0.33
ZNF540-208ENST00000589857 RAPGEF4Q8WZA2 1011 aa13□□□□□ -0.33
ZNF540-208ENST00000589857 SPG7Q9UQ90 795 aa13□□□□□ -0.33
ZNF540-208ENST00000589857 ST18O60284 1047 aa12.99□□□□□ -0.33
ZNF540-208ENST00000589857 SDSP20132 328 aa12.99□□□□□ -0.33
ZNF540-208ENST00000589857 PDE1AP54750 535 aa12.99□□□□□ -0.33
ZNF540-208ENST00000589857 ZCRB1Q8TBF4 217 aaKnown RBP12.99□□□□□ -0.33
ZNF540-208ENST00000589857 HYPKQ9NX55 129 aa12.99□□□□□ -0.33
ZNF540-208ENST00000589857 CD2APQ9Y5K6 639 aa12.99□□□□□ -0.33
ZNF540-208ENST00000589857 TATP17735 454 aaPredicted RBP12.98□□□□□ -0.33
ZNF540-208ENST00000589857 MX1P20591 662 aa12.98□□□□□ -0.33
ZNF540-208ENST00000589857 L1TD1Q5T7N2 865 aaKnown RBP12.98□□□□□ -0.33
ZNF540-208ENST00000589857 SSH3Q8TE77 659 aa12.98□□□□□ -0.33
ZNF540-208ENST00000589857 STAP2Q9UGK3 403 aa12.98□□□□□ -0.33
ZNF540-208ENST00000589857 N4BP2Q86UW6 1770 aaPredicted RBP12.97□□□□□ -0.33
ZNF540-208ENST00000589857 MCM4P33991 863 aa12.97□□□□□ -0.33
ZNF540-208ENST00000589857 MCM2P49736 904 aa12.97□□□□□ -0.33
ZNF540-208ENST00000589857 ERC1Q8IUD2 1116 aa12.97□□□□□ -0.33
ZNF540-208ENST00000589857 KIF1BPQ96EK5 621 aa12.97□□□□□ -0.33
ZNF540-208ENST00000589857 USP26Q9BXU7 913 aa12.97□□□□□ -0.33
ZNF540-208ENST00000589857 LRRFIP2Q9Y608 721 aaKnown RBP12.97□□□□□ -0.33
ZNF540-208ENST00000589857 PAPPAQ13219 1627 aa12.97□□□□□ -0.33
ZNF540-208ENST00000589857 GOLGA6L22H0YM25 854 aa12.96□□□□□ -0.33
ZNF540-208ENST00000589857 EIF2S2P20042 333 aaKnown RBP12.96□□□□□ -0.33
ZNF540-208ENST00000589857 SKOR2Q2VWA4 1001 aaPredicted RBP12.96□□□□□ -0.33
ZNF540-208ENST00000589857 NLGN2Q8NFZ4 835 aa12.96□□□□□ -0.33
ZNF540-208ENST00000589857 USP44Q9H0E7 712 aa12.96□□□□□ -0.33
ZNF540-208ENST00000589857 CWC22Q9HCG8 908 aaKnown RBP12.96□□□□□ -0.33
ZNF540-208ENST00000589857 ISY1Q9ULR0 285 aaKnown RBP12.96□□□□□ -0.33
ZNF540-208ENST00000589857 KDM3BQ7LBC6 1761 aa12.95□□□□□ -0.34
ZNF540-208ENST00000589857 APBB1O00213 710 aa12.95□□□□□ -0.34
ZNF540-208ENST00000589857 SMARCA5O60264 1052 aaPredicted RBP12.95□□□□□ -0.34
ZNF540-208ENST00000589857 HSPA6P17066 643 aa12.95□□□□□ -0.34
ZNF540-208ENST00000589857 ANAPC15P60006 121 aa12.95□□□□□ -0.34
ZNF540-208ENST00000589857 POLA2Q14181 598 aa12.95□□□□□ -0.34
ZNF540-208ENST00000589857 NECTIN2Q92692 538 aa12.95□□□□□ -0.34
ZNF540-208ENST00000589857 GPATCH3Q96I76 525 aa12.95□□□□□ -0.34
ZNF540-208ENST00000589857 LGR6Q9HBX8 967 aa12.95□□□□□ -0.34
ZNF540-208ENST00000589857 CHPF2Q9P2E5 772 aa12.95□□□□□ -0.34
ZNF540-208ENST00000589857 HEG1Q9ULI3 1381 aa12.94□□□□□ -0.34
ZNF540-208ENST00000589857 RGPD5Q99666 1765 aa12.94□□□□□ -0.34
ZNF540-208ENST00000589857 CACNA1FO60840 1977 aa12.94□□□□□ -0.34
ZNF540-208ENST00000589857 SALL3Q9BXA9 1300 aa12.94□□□□□ -0.34
ZNF540-208ENST00000589857 KAT6BQ8WYB5 2073 aa12.94□□□□□ -0.34
ZNF540-208ENST00000589857 DDIT3P35638 169 aa12.94□□□□□ -0.34
ZNF540-208ENST00000589857 NUCB2P80303 420 aa12.94□□□□□ -0.34
ZNF540-208ENST00000589857 MTX1Q13505 466 aa12.94□□□□□ -0.34
ZNF540-208ENST00000589857 BEND3Q5T5X7 828 aa12.94□□□□□ -0.34
ZNF540-208ENST00000589857 KSR2Q6VAB6 950 aa12.94□□□□□ -0.34
ZNF540-208ENST00000589857 MPRIPQ6WCQ1 1025 aa12.94□□□□□ -0.34
ZNF540-208ENST00000589857 C16orf71Q8IYS4 520 aaPredicted RBP12.94□□□□□ -0.34
ZNF540-208ENST00000589857 SMARCC1Q92922 1105 aaPredicted RBP12.94□□□□□ -0.34
ZNF540-208ENST00000589857 KIF2CQ99661 725 aa12.94□□□□□ -0.34
ZNF540-208ENST00000589857 EXOC6BQ9Y2D4 811 aa12.94□□□□□ -0.34
ZNF540-208ENST00000589857 BTAF1O14981 1849 aa12.94□□□□□ -0.34
ZNF540-208ENST00000589857 YBX3P16989 372 aaKnown RBP eCLIP12.93□□□□□ -0.34
ZNF540-208ENST00000589857 COL23A1Q86Y22 540 aaPredicted RBP12.93□□□□□ -0.34
ZNF540-208ENST00000589857 IFNL2Q8IZJ0 200 aa12.93□□□□□ -0.34
ZNF540-208ENST00000589857 PHAXQ9H814 394 aaKnown RBP12.93□□□□□ -0.34
ZNF540-208ENST00000589857 PI4KAP2A4QPH2 592 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms