RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 USP42Q9H9J4 1324 aaKnown RBP17.38■□□□□ 0.37
VMP1-210ENST00000589823 CACNA1FO60840 1977 aa17.37■□□□□ 0.37
VMP1-210ENST00000589823 PSDA5PKW4 1024 aaPredicted RBP17.37■□□□□ 0.37
VMP1-210ENST00000589823 ERVV-1B6SEH8 477 aa17.37■□□□□ 0.37
VMP1-210ENST00000589823 USPL1Q5W0Q7 1092 aa17.37■□□□□ 0.37
VMP1-210ENST00000589823 ANKRD13DQ6ZTN6 518 aa17.37■□□□□ 0.37
VMP1-210ENST00000589823 RIC3Q7Z5B4 369 aa17.37■□□□□ 0.37
VMP1-210ENST00000589823 PLBD2Q8NHP8 589 aa17.37■□□□□ 0.37
VMP1-210ENST00000589823 SRP68Q9UHB9 627 aaKnown RBP17.37■□□□□ 0.37
VMP1-210ENST00000589823 ZNF652Q9Y2D9 606 aa17.37■□□□□ 0.37
VMP1-210ENST00000589823 PTPRCP08575 1304 aa17.37■□□□□ 0.37
VMP1-210ENST00000589823 CAMTA2O94983 1202 aa17.36■□□□□ 0.37
VMP1-210ENST00000589823 C4AP0C0L4 1744 aa17.35■□□□□ 0.37
VMP1-210ENST00000589823 RGL2O15211 777 aa17.35■□□□□ 0.37
VMP1-210ENST00000589823 IPO8O15397 1037 aaKnown RBP17.35■□□□□ 0.37
VMP1-210ENST00000589823 KSR2Q6VAB6 950 aa17.35■□□□□ 0.37
VMP1-210ENST00000589823 SLC16A10Q8TF71 515 aa17.35■□□□□ 0.37
VMP1-210ENST00000589823 FRAT1Q92837 279 aaPredicted RBP17.35■□□□□ 0.37
VMP1-210ENST00000589823 NOB1Q9ULX3 412 aaKnown RBP17.35■□□□□ 0.37
VMP1-210ENST00000589823 PI4KAP2A4QPH2 592 aa17.34■□□□□ 0.37
VMP1-210ENST00000589823 GYS1P13807 737 aa17.34■□□□□ 0.37
VMP1-210ENST00000589823 CLEC4GQ6UXB4 293 aa17.34■□□□□ 0.37
VMP1-210ENST00000589823 GIGYF2Q6Y7W6 1299 aaKnown RBP17.34■□□□□ 0.37
VMP1-210ENST00000589823 PI4KAP1Q8N8J0 262 aa17.34■□□□□ 0.37
VMP1-210ENST00000589823 CENPBP07199 599 aaPredicted RBP17.33■□□□□ 0.36
VMP1-210ENST00000589823 HLFQ16534 295 aa17.33■□□□□ 0.36
VMP1-210ENST00000589823 HSP90AB3PQ58FF7 597 aa17.33■□□□□ 0.36
VMP1-210ENST00000589823 API5Q9BZZ5 524 aaKnown RBP17.33■□□□□ 0.36
VMP1-210ENST00000589823 PDGFDQ9GZP0 370 aaPredicted RBP17.33■□□□□ 0.36
VMP1-210ENST00000589823 MAP3K2Q9Y2U5 619 aa17.33■□□□□ 0.36
VMP1-210ENST00000589823 SCN7AQ01118 1682 aa17.32■□□□□ 0.36
VMP1-210ENST00000589823 ZKSCAN2Q63HK3 967 aa17.32■□□□□ 0.36
VMP1-210ENST00000589823 NLGN1Q8N2Q7 840 aa17.32■□□□□ 0.36
VMP1-210ENST00000589823 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.32■□□□□ 0.36
VMP1-210ENST00000589823 DNAAF4Q8WXU2 420 aa17.32■□□□□ 0.36
VMP1-210ENST00000589823 ARHGAP45Q92619 1136 aa17.32■□□□□ 0.36
VMP1-210ENST00000589823 BCL2L12Q9HB09 334 aa17.32■□□□□ 0.36
VMP1-210ENST00000589823 BCORQ6W2J9 1755 aa17.32■□□□□ 0.36
VMP1-210ENST00000589823 ADCY9O60503 1353 aa17.31■□□□□ 0.36
VMP1-210ENST00000589823 NEXNQ0ZGT2 675 aa17.31■□□□□ 0.36
VMP1-210ENST00000589823 FKBP8Q14318 412 aa17.31■□□□□ 0.36
VMP1-210ENST00000589823 METTL22Q9BUU2 404 aaPredicted RBP17.31■□□□□ 0.36
VMP1-210ENST00000589823 F6X3S4 739 aa17.3■□□□□ 0.36
VMP1-210ENST00000589823 TCIRG1Q13488 830 aa17.3■□□□□ 0.36
VMP1-210ENST00000589823 MSL1Q68DK7 614 aa17.3■□□□□ 0.36
VMP1-210ENST00000589823 SLC4A10Q6U841 1118 aa17.3■□□□□ 0.36
VMP1-210ENST00000589823 ATF7IPQ6VMQ6 1270 aa17.3■□□□□ 0.36
VMP1-210ENST00000589823 MYD88Q99836 296 aa17.3■□□□□ 0.36
VMP1-210ENST00000589823 MTFR1LQ9H019 292 aa17.3■□□□□ 0.36
VMP1-210ENST00000589823 CASZ1Q86V15 1759 aa17.3■□□□□ 0.36
VMP1-210ENST00000589823 ZBTB7AO95365 584 aa17.29■□□□□ 0.36
VMP1-210ENST00000589823 TBC1D9BQ66K14 1250 aa17.29■□□□□ 0.36
VMP1-210ENST00000589823 BICDL1Q6ZP65 573 aa17.29■□□□□ 0.36
VMP1-210ENST00000589823 SETDB2Q96T68 719 aa17.29■□□□□ 0.36
VMP1-210ENST00000589823 NIP7Q9Y221 180 aaKnown RBP eCLIP17.29■□□□□ 0.36
VMP1-210ENST00000589823 ARFGEF2Q9Y6D5 1785 aa17.29■□□□□ 0.36
VMP1-210ENST00000589823 ATP10DQ9P241 1426 aa17.29■□□□□ 0.36
VMP1-210ENST00000589823 GPTP24298 496 aa17.28■□□□□ 0.36
VMP1-210ENST00000589823 MS4A1P11836 297 aa17.27■□□□□ 0.36
VMP1-210ENST00000589823 TRIM27P14373 513 aa17.27■□□□□ 0.36
VMP1-210ENST00000589823 NFIXQ14938 502 aa17.27■□□□□ 0.36
VMP1-210ENST00000589823 PARP10Q53GL7 1025 aa17.27■□□□□ 0.36
VMP1-210ENST00000589823 FTSJ3Q8IY81 847 aaKnown RBP17.27■□□□□ 0.36
VMP1-210ENST00000589823 NUP98P52948 1817 aa17.26■□□□□ 0.35
VMP1-210ENST00000589823 ATP5J2-PTCD1G3V325 749 aa17.26■□□□□ 0.35
VMP1-210ENST00000589823 TM4SF1P30408 202 aa17.26■□□□□ 0.35
VMP1-210ENST00000589823 ZNF34Q8IZ26 560 aa17.26■□□□□ 0.35
VMP1-210ENST00000589823 LINS1Q8NG48 757 aa17.26■□□□□ 0.35
VMP1-210ENST00000589823 ISCA1Q9BUE6 129 aa17.26■□□□□ 0.35
VMP1-210ENST00000589823 ATF5Q9Y2D1 282 aaPredicted RBP17.26■□□□□ 0.35
VMP1-210ENST00000589823 PARP3Q9Y6F1 533 aa17.26■□□□□ 0.35
VMP1-210ENST00000589823 CARMIL3Q8ND23 1372 aa17.26■□□□□ 0.35
VMP1-210ENST00000589823 PXDNLA1KZ92 1463 aa17.25■□□□□ 0.35
VMP1-210ENST00000589823 PLIN1O60240 522 aa17.25■□□□□ 0.35
VMP1-210ENST00000589823 MMP10P09238 476 aa17.25■□□□□ 0.35
VMP1-210ENST00000589823 POLD1P28340 1107 aa17.25■□□□□ 0.35
VMP1-210ENST00000589823 TRIM28Q13263 835 aaKnown RBP17.25■□□□□ 0.35
VMP1-210ENST00000589823 BEND3Q5T5X7 828 aa17.25■□□□□ 0.35
VMP1-210ENST00000589823 PPP1R42Q7Z4L9 355 aa17.25■□□□□ 0.35
VMP1-210ENST00000589823 DZIP1LQ8IYY4 767 aaKnown RBP17.25■□□□□ 0.35
VMP1-210ENST00000589823 CCDC191Q8NCU4 936 aa17.25■□□□□ 0.35
VMP1-210ENST00000589823 CLUAP1Q96AJ1 413 aa17.25■□□□□ 0.35
VMP1-210ENST00000589823 SRCIN1Q9C0H9 1055 aa17.25■□□□□ 0.35
VMP1-210ENST00000589823 ABCC4O15439 1325 aa17.24■□□□□ 0.35
VMP1-210ENST00000589823 NPHP1O15259 732 aa17.24■□□□□ 0.35
VMP1-210ENST00000589823 IGKV5-2P06315 115 aa17.24■□□□□ 0.35
VMP1-210ENST00000589823 CCT4P50991 539 aaKnown RBP17.24■□□□□ 0.35
VMP1-210ENST00000589823 RRP1P56182 461 aaKnown RBP17.24■□□□□ 0.35
VMP1-210ENST00000589823 NLRP10Q86W26 655 aa17.24■□□□□ 0.35
VMP1-210ENST00000589823 NYXQ9GZU5 481 aa17.24■□□□□ 0.35
VMP1-210ENST00000589823 SPON1Q9HCB6 807 aa17.24■□□□□ 0.35
VMP1-210ENST00000589823 CWC25Q9NXE8 425 aaPredicted RBP17.24■□□□□ 0.35
VMP1-210ENST00000589823 TNNQ9UQP3 1299 aa17.24■□□□□ 0.35
VMP1-210ENST00000589823 UBN2Q6ZU65 1347 aa17.23■□□□□ 0.35
VMP1-210ENST00000589823 ANKRD36CQ5JPF3 1778 aa17.23■□□□□ 0.35
VMP1-210ENST00000589823 FAM177BA6PVY3 158 aa17.23■□□□□ 0.35
VMP1-210ENST00000589823 NEURL1BA8MQ27 555 aa17.23■□□□□ 0.35
VMP1-210ENST00000589823 POLRMTO00411 1230 aaKnown RBP17.23■□□□□ 0.35
VMP1-210ENST00000589823 ALDH1L1O75891 902 aa17.23■□□□□ 0.35
VMP1-210ENST00000589823 CWF19L2Q2TBE0 894 aaKnown RBP17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms