RNA–Protein interactions for RNA: ENST00000587220.5

ZNF540-205, Transcript of zinc finger protein 540, humanhuman

TSL 2

Gene ZNF540, Length 576 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-205ENST00000587220 KIF3CO14782 793 aa14.01□□□□□ -0.17
ZNF540-205ENST00000587220 RASSF7Q02833 373 aa14.01□□□□□ -0.17
ZNF540-205ENST00000587220 C16orf71Q8IYS4 520 aaPredicted RBP14.01□□□□□ -0.17
ZNF540-205ENST00000587220 TSPYL4Q9UJ04 414 aa14.01□□□□□ -0.17
ZNF540-205ENST00000587220 NIP7Q9Y221 180 aaKnown RBP eCLIP14.01□□□□□ -0.17
ZNF540-205ENST00000587220 SBF1O95248 1867 aa14.01□□□□□ -0.17
ZNF540-205ENST00000587220 COL11A2P13942 1736 aaPredicted RBP14.01□□□□□ -0.17
ZNF540-205ENST00000587220 LMNB1P20700 586 aa14□□□□□ -0.17
ZNF540-205ENST00000587220 GTF2E1P29083 439 aaPredicted RBP14□□□□□ -0.17
ZNF540-205ENST00000587220 EIF4A1P60842 406 aaKnown RBP14□□□□□ -0.17
ZNF540-205ENST00000587220 TPTE2Q6XPS3 522 aa14□□□□□ -0.17
ZNF540-205ENST00000587220 KIF6Q6ZMV9 814 aa14□□□□□ -0.17
ZNF540-205ENST00000587220 NMRK2Q9NPI5 230 aa14□□□□□ -0.17
ZNF540-205ENST00000587220 ZNF219Q9P2Y4 722 aaPredicted RBP14□□□□□ -0.17
ZNF540-205ENST00000587220 RRP7AQ9Y3A4 280 aaKnown RBP14□□□□□ -0.17
ZNF540-205ENST00000587220 FAM177BA6PVY3 158 aa13.99□□□□□ -0.17
ZNF540-205ENST00000587220 RGL2O15211 777 aa13.99□□□□□ -0.17
ZNF540-205ENST00000587220 MYL6BP14649 208 aa13.99□□□□□ -0.17
ZNF540-205ENST00000587220 TMPOP42166 694 aaKnown RBP13.99□□□□□ -0.17
ZNF540-205ENST00000587220 NEUROD2Q15784 382 aa13.99□□□□□ -0.17
ZNF540-205ENST00000587220 CCDC146Q8IYE0 955 aa13.99□□□□□ -0.17
ZNF540-205ENST00000587220 CNKSR1Q969H4 720 aa13.99□□□□□ -0.17
ZNF540-205ENST00000587220 CACNA1SQ13698 1873 aa13.99□□□□□ -0.17
ZNF540-205ENST00000587220 ZC3H4Q9UPT8 1303 aaKnown RBP13.98□□□□□ -0.17
ZNF540-205ENST00000587220 C21orf2O43822 256 aa13.98□□□□□ -0.17
ZNF540-205ENST00000587220 TOMM70O94826 608 aa13.98□□□□□ -0.17
ZNF540-205ENST00000587220 HSPA6P17066 643 aa13.98□□□□□ -0.17
ZNF540-205ENST00000587220 STYK1Q6J9G0 422 aa13.98□□□□□ -0.17
ZNF540-205ENST00000587220 MASTLQ96GX5 879 aa13.98□□□□□ -0.17
ZNF540-205ENST00000587220 SRGNP10124 158 aa13.97□□□□□ -0.17
ZNF540-205ENST00000587220 PRPF40BQ6NWY9 871 aaKnown RBP13.97□□□□□ -0.17
ZNF540-205ENST00000587220 TIAM2Q8IVF5 1701 aa13.96□□□□□ -0.17
ZNF540-205ENST00000587220 CCDC88AQ3V6T2 1871 aa13.96□□□□□ -0.17
ZNF540-205ENST00000587220 TNRC6CQ9HCJ0 1690 aaKnown RBP13.96□□□□□ -0.17
ZNF540-205ENST00000587220 ERVV-1B6SEH8 477 aa13.96□□□□□ -0.17
ZNF540-205ENST00000587220 HLFQ16534 295 aa13.96□□□□□ -0.17
ZNF540-205ENST00000587220 SOGA3Q5TF21 947 aa13.96□□□□□ -0.17
ZNF540-205ENST00000587220 RUNDC1Q96C34 613 aa13.96□□□□□ -0.17
ZNF540-205ENST00000587220 NYXQ9GZU5 481 aa13.96□□□□□ -0.17
ZNF540-205ENST00000587220 BABAM1Q9NWV8 329 aa13.96□□□□□ -0.17
ZNF540-205ENST00000587220 ERBB4Q15303 1308 aa13.95□□□□□ -0.18
ZNF540-205ENST00000587220 MAP3K15Q6ZN16 1313 aa13.95□□□□□ -0.18
ZNF540-205ENST00000587220 NFKBIEO00221 500 aa13.95□□□□□ -0.18
ZNF540-205ENST00000587220 NPR1P16066 1061 aa13.95□□□□□ -0.18
ZNF540-205ENST00000587220 EIF2S2P20042 333 aaKnown RBP13.95□□□□□ -0.18
ZNF540-205ENST00000587220 TAOK3Q9H2K8 898 aa13.95□□□□□ -0.18
ZNF540-205ENST00000587220 ZBTB3Q9H5J0 574 aa13.95□□□□□ -0.18
ZNF540-205ENST00000587220 LAS1LQ9Y4W2 734 aaKnown RBP13.95□□□□□ -0.18
ZNF540-205ENST00000587220 NUP98P52948 1817 aa13.94□□□□□ -0.18
ZNF540-205ENST00000587220 ARFGEF2Q9Y6D5 1785 aa13.94□□□□□ -0.18
ZNF540-205ENST00000587220 TTLL7Q6ZT98 887 aa13.94□□□□□ -0.18
ZNF540-205ENST00000587220 PRKRIP1Q9H875 184 aaPredicted RBP13.94□□□□□ -0.18
ZNF540-205ENST00000587220 RRAGCQ9HB90 399 aa13.94□□□□□ -0.18
ZNF540-205ENST00000587220 ADAMTS8Q9UP79 889 aa13.94□□□□□ -0.18
ZNF540-205ENST00000587220 SLX4Q8IY92 1834 aa13.94□□□□□ -0.18
ZNF540-205ENST00000587220 FER1L6Q2WGJ9 1857 aa13.93□□□□□ -0.18
ZNF540-205ENST00000587220 GPTP24298 496 aa13.93□□□□□ -0.18
ZNF540-205ENST00000587220 ERFEQ4G0M1 354 aa13.93□□□□□ -0.18
ZNF540-205ENST00000587220 RBM46Q8TBY0 533 aaKnown RBP13.93□□□□□ -0.18
ZNF540-205ENST00000587220 GLTPD2A6NH11 291 aa13.92□□□□□ -0.18
ZNF540-205ENST00000587220 APLP1P51693 650 aa13.92□□□□□ -0.18
ZNF540-205ENST00000587220 PRELPP51888 382 aa13.92□□□□□ -0.18
ZNF540-205ENST00000587220 DPY19L2Q6NUT2 758 aa13.92□□□□□ -0.18
ZNF540-205ENST00000587220 LTBP3Q9NS15 1303 aa13.91□□□□□ -0.18
ZNF540-205ENST00000587220 ALDH1B1P30837 517 aa13.91□□□□□ -0.18
ZNF540-205ENST00000587220 CCDC93Q567U6 631 aa13.91□□□□□ -0.18
ZNF540-205ENST00000587220 NUTM1Q86Y26 1132 aa13.91□□□□□ -0.18
ZNF540-205ENST00000587220 NECTIN2Q92692 538 aa13.91□□□□□ -0.18
ZNF540-205ENST00000587220 RPGRQ92834 1020 aaKnown RBP13.91□□□□□ -0.18
ZNF540-205ENST00000587220 DICER1Q9UPY3 1922 aaKnown RBP13.9□□□□□ -0.18
ZNF540-205ENST00000587220 KLRG2A4D1S0 409 aaPredicted RBP13.9□□□□□ -0.18
ZNF540-205ENST00000587220 VEGFAP15692 232 aaPredicted RBP13.9□□□□□ -0.18
ZNF540-205ENST00000587220 FSTL1Q12841 308 aa13.9□□□□□ -0.18
ZNF540-205ENST00000587220 GIGYF2Q6Y7W6 1299 aaKnown RBP13.9□□□□□ -0.18
ZNF540-205ENST00000587220 PPP1R42Q7Z4L9 355 aa13.9□□□□□ -0.18
ZNF540-205ENST00000587220 TRIM35Q9UPQ4 493 aa13.9□□□□□ -0.18
ZNF540-205ENST00000587220 ABCC12Q96J65 1359 aa13.89□□□□□ -0.19
ZNF540-205ENST00000587220 IBTKQ9P2D0 1353 aaPredicted RBP13.89□□□□□ -0.19
ZNF540-205ENST00000587220 CHL1O00533 1208 aa13.89□□□□□ -0.19
ZNF540-205ENST00000587220 ANXA1P04083 346 aa13.89□□□□□ -0.19
ZNF540-205ENST00000587220 AIMP1Q12904 312 aaKnown RBP13.89□□□□□ -0.19
ZNF540-205ENST00000587220 UBN2Q6ZU65 1347 aa13.89□□□□□ -0.19
ZNF540-205ENST00000587220 PROSER3Q2NL68 480 aa13.88□□□□□ -0.19
ZNF540-205ENST00000587220 PARP10Q53GL7 1025 aa13.88□□□□□ -0.19
ZNF540-205ENST00000587220 SUSD4Q5VX71 490 aa13.88□□□□□ -0.19
ZNF540-205ENST00000587220 ZNF34Q8IZ26 560 aa13.88□□□□□ -0.19
ZNF540-205ENST00000587220 RTKN2Q8IZC4 609 aa13.88□□□□□ -0.19
ZNF540-205ENST00000587220 SMC1BQ8NDV3 1235 aa13.88□□□□□ -0.19
ZNF540-205ENST00000587220 FKBP4Q02790 459 aaKnown RBP eCLIP13.87□□□□□ -0.19
ZNF540-205ENST00000587220 CALD1Q05682 793 aaKnown RBP13.87□□□□□ -0.19
ZNF540-205ENST00000587220 PDIA6Q15084 440 aa13.87□□□□□ -0.19
ZNF540-205ENST00000587220 KRT24Q2M2I5 525 aa13.87□□□□□ -0.19
ZNF540-205ENST00000587220 HSP90AB3PQ58FF7 597 aa13.87□□□□□ -0.19
ZNF540-205ENST00000587220 HDGFL1Q5TGJ6 251 aa13.87□□□□□ -0.19
ZNF540-205ENST00000587220 COPS6Q7L5N1 327 aa13.87□□□□□ -0.19
ZNF540-205ENST00000587220 XAGE3Q8WTP9 111 aa13.87□□□□□ -0.19
ZNF540-205ENST00000587220 C7orf43Q8WVR3 580 aa13.87□□□□□ -0.19
ZNF540-205ENST00000587220 UTP14AQ9BVJ6 771 aaKnown RBP13.87□□□□□ -0.19
ZNF540-205ENST00000587220 DDX21Q9NR30 783 aaKnown RBP eCLIP13.87□□□□□ -0.19
ZNF540-205ENST00000587220 NTSR2O95665 410 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms