RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 TTLL7Q6ZT98 887 aa36.79■■■■□ 3.48
LIG3-208ENST00000586407 BABAM1Q9NWV8 329 aa36.79■■■■□ 3.48
LIG3-208ENST00000586407 ZNF652Q9Y2D9 606 aa36.79■■■■□ 3.48
LIG3-208ENST00000586407 ADCY9O60503 1353 aa36.78■■■■□ 3.48
LIG3-208ENST00000586407 CHL1O00533 1208 aa36.78■■■■□ 3.48
LIG3-208ENST00000586407 CNBD1Q8NA66 436 aa36.78■■■■□ 3.48
LIG3-208ENST00000586407 NECTIN2Q92692 538 aa36.78■■■■□ 3.48
LIG3-208ENST00000586407 CLEC4GQ6UXB4 293 aa36.77■■■■□ 3.48
LIG3-208ENST00000586407 NPHP1O15259 732 aa36.76■■■■□ 3.48
LIG3-208ENST00000586407 ANXA1P04083 346 aa36.76■■■■□ 3.48
LIG3-208ENST00000586407 NIP7Q9Y221 180 aaKnown RBP eCLIP36.76■■■■□ 3.48
LIG3-208ENST00000586407 FAM177BA6PVY3 158 aa36.75■■■■□ 3.47
LIG3-208ENST00000586407 ANP32CO43423 234 aa36.75■■■■□ 3.47
LIG3-208ENST00000586407 CACNA1SQ13698 1873 aa36.75■■■■□ 3.47
LIG3-208ENST00000586407 PROSER3Q2NL68 480 aa36.74■■■■□ 3.47
LIG3-208ENST00000586407 H0YIN7 160 aa36.73■■■■□ 3.47
LIG3-208ENST00000586407 PDIA6Q15084 440 aa36.73■■■■□ 3.47
LIG3-208ENST00000586407 NBPF5PQ86XG9 351 aaPredicted RBP36.73■■■■□ 3.47
LIG3-208ENST00000586407 BRIP1Q9BX63 1249 aa36.73■■■■□ 3.47
LIG3-208ENST00000586407 ZBTB3Q9H5J0 574 aa36.73■■■■□ 3.47
LIG3-208ENST00000586407 MAP3K15Q6ZN16 1313 aa36.72■■■■□ 3.47
LIG3-208ENST00000586407 ZNF526Q8TF50 670 aaPredicted RBP36.72■■■■□ 3.47
LIG3-208ENST00000586407 MRS2Q9HD23 443 aa36.71■■■■□ 3.47
LIG3-208ENST00000586407 ERBB4Q15303 1308 aa36.7■■■■□ 3.47
LIG3-208ENST00000586407 ST5P78524 1137 aa36.7■■■■□ 3.47
LIG3-208ENST00000586407 KIF6Q6ZMV9 814 aa36.7■■■■□ 3.47
LIG3-208ENST00000586407 PDE6BP35913 854 aa36.69■■■■□ 3.46
LIG3-208ENST00000586407 LRP10Q7Z4F1 713 aa36.69■■■■□ 3.46
LIG3-208ENST00000586407 ZNF622Q969S3 477 aaKnown RBP eCLIP36.69■■■■□ 3.46
LIG3-208ENST00000586407 TTLL6Q8N841 843 aa36.68■■■■□ 3.46
LIG3-208ENST00000586407 SBF1O95248 1867 aa36.67■■■■□ 3.46
LIG3-208ENST00000586407 MBIPQ9NS73 344 aa36.67■■■■□ 3.46
LIG3-208ENST00000586407 ERVV-1B6SEH8 477 aa36.66■■■■□ 3.46
LIG3-208ENST00000586407 GPTP24298 496 aa36.66■■■■□ 3.46
LIG3-208ENST00000586407 CFAP44Q96MT7 982 aa36.66■■■■□ 3.46
LIG3-208ENST00000586407 RGL2O15211 777 aa36.65■■■■□ 3.46
LIG3-208ENST00000586407 TNRC6CQ9HCJ0 1690 aaKnown RBP36.64■■■■□ 3.46
LIG3-208ENST00000586407 RASSF7Q02833 373 aa36.64■■■■□ 3.46
LIG3-208ENST00000586407 ZNF219Q9P2Y4 722 aaPredicted RBP36.64■■■■□ 3.46
LIG3-208ENST00000586407 C9orf131Q5VYM1 1079 aa36.63■■■■□ 3.45
LIG3-208ENST00000586407 SLX4Q8IY92 1834 aa36.63■■■■□ 3.45
LIG3-208ENST00000586407 ZNF853P0CG23 659 aa36.62■■■■□ 3.45
LIG3-208ENST00000586407 UBN2Q6ZU65 1347 aa36.61■■■■□ 3.45
LIG3-208ENST00000586407 TPTE2Q6XPS3 522 aa36.61■■■■□ 3.45
LIG3-208ENST00000586407 AIMP1Q12904 312 aaKnown RBP36.6■■■■□ 3.45
LIG3-208ENST00000586407 CCDC88AQ3V6T2 1871 aa36.6■■■■□ 3.45
LIG3-208ENST00000586407 ARFGEF2Q9Y6D5 1785 aa36.59■■■■□ 3.45
LIG3-208ENST00000586407 ABCC12Q96J65 1359 aa36.59■■■■□ 3.45
LIG3-208ENST00000586407 NUTM1Q86Y26 1132 aa36.59■■■■□ 3.45
LIG3-208ENST00000586407 XAGE3Q8WTP9 111 aa36.59■■■■□ 3.45
LIG3-208ENST00000586407 GPBP1L1Q9HC44 474 aaPredicted RBP36.59■■■■□ 3.45
LIG3-208ENST00000586407 IFT57Q9NWB7 429 aa36.59■■■■□ 3.45
LIG3-208ENST00000586407 CHPF2Q9P2E5 772 aa36.59■■■■□ 3.45
LIG3-208ENST00000586407 SRGNP10124 158 aa36.58■■■■□ 3.45
LIG3-208ENST00000586407 HDGFL1Q5TGJ6 251 aa36.58■■■■□ 3.45
LIG3-208ENST00000586407 DUSP27Q5VZP5 1158 aa36.58■■■■□ 3.45
LIG3-208ENST00000586407 PDZRN3Q9UPQ7 1066 aa36.58■■■■□ 3.45
LIG3-208ENST00000586407 ANKRD36CQ5JPF3 1778 aa36.58■■■■□ 3.45
LIG3-208ENST00000586407 GIGYF2Q6Y7W6 1299 aaKnown RBP36.57■■■■□ 3.44
LIG3-208ENST00000586407 COPS6Q7L5N1 327 aa36.57■■■■□ 3.44
LIG3-208ENST00000586407 RNF181Q9P0P0 153 aa36.57■■■■□ 3.44
LIG3-208ENST00000586407 GTF2E1P29083 439 aaPredicted RBP36.56■■■■□ 3.44
LIG3-208ENST00000586407 DDX21Q9NR30 783 aaKnown RBP eCLIP36.56■■■■□ 3.44
LIG3-208ENST00000586407 C21orf2O43822 256 aa36.55■■■■□ 3.44
LIG3-208ENST00000586407 GNAI1P63096 354 aa36.55■■■■□ 3.44
LIG3-208ENST00000586407 SUSD4Q5VX71 490 aa36.55■■■■□ 3.44
LIG3-208ENST00000586407 STYK1Q6J9G0 422 aa36.55■■■■□ 3.44
LIG3-208ENST00000586407 ZNF34Q8IZ26 560 aa36.55■■■■□ 3.44
LIG3-208ENST00000586407 ELL2O00472 640 aaPredicted RBP36.54■■■■□ 3.44
LIG3-208ENST00000586407 PRELPP51888 382 aa36.54■■■■□ 3.44
LIG3-208ENST00000586407 CALD1Q05682 793 aaKnown RBP36.54■■■■□ 3.44
LIG3-208ENST00000586407 ERFEQ4G0M1 354 aa36.54■■■■□ 3.44
LIG3-208ENST00000586407 MASTLQ96GX5 879 aa36.54■■■■□ 3.44
LIG3-208ENST00000586407 FER1L6Q2WGJ9 1857 aa36.53■■■■□ 3.44
LIG3-208ENST00000586407 NFKBIEO00221 500 aa36.52■■■■□ 3.44
LIG3-208ENST00000586407 PRPF40BQ6NWY9 871 aaKnown RBP36.52■■■■□ 3.44
LIG3-208ENST00000586407 HOXB7P09629 217 aa36.51■■■■□ 3.44
LIG3-208ENST00000586407 C1QTNF8P60827 252 aa36.51■■■■□ 3.44
LIG3-208ENST00000586407 CNKSR1Q969H4 720 aa36.51■■■■□ 3.44
LIG3-208ENST00000586407 NYXQ9GZU5 481 aa36.5■■■■□ 3.43
LIG3-208ENST00000586407 KLRG2A4D1S0 409 aaPredicted RBP36.49■■■■□ 3.43
LIG3-208ENST00000586407 TIAM2Q8IVF5 1701 aa36.48■■■■□ 3.43
LIG3-208ENST00000586407 NTSR2O95665 410 aa36.48■■■■□ 3.43
LIG3-208ENST00000586407 NPR1P16066 1061 aa36.48■■■■□ 3.43
LIG3-208ENST00000586407 C8orf58Q8NAV2 365 aa36.48■■■■□ 3.43
LIG3-208ENST00000586407 SALL2Q9Y467 1007 aaPredicted RBP36.48■■■■□ 3.43
LIG3-208ENST00000586407 WWC1Q8IX03 1113 aa36.47■■■■□ 3.43
LIG3-208ENST00000586407 TSR2Q969E8 191 aaKnown RBP36.47■■■■□ 3.43
LIG3-208ENST00000586407 ZNF428Q96B54 188 aa36.47■■■■□ 3.43
LIG3-208ENST00000586407 IBTKQ9P2D0 1353 aaPredicted RBP36.47■■■■□ 3.43
LIG3-208ENST00000586407 DBF4Q9UBU7 674 aaPredicted RBP36.45■■■■□ 3.43
LIG3-208ENST00000586407 CCDC27Q2M243 656 aa36.44■■■■□ 3.42
LIG3-208ENST00000586407 FAM9BQ8IZU0 186 aa36.44■■■■□ 3.42
LIG3-208ENST00000586407 LMNB1P20700 586 aa36.43■■■■□ 3.42
LIG3-208ENST00000586407 PARP10Q53GL7 1025 aa36.43■■■■□ 3.42
LIG3-208ENST00000586407 OLFM4Q6UX06 510 aa36.43■■■■□ 3.42
LIG3-208ENST00000586407 C3orf67Q6ZVT6 689 aa36.43■■■■□ 3.42
LIG3-208ENST00000586407 TSPYL6Q8N831 410 aa36.42■■■■□ 3.42
LIG3-208ENST00000586407 NMRK2Q9NPI5 230 aa36.42■■■■□ 3.42
LIG3-208ENST00000586407 KIF3CO14782 793 aa36.41■■■■□ 3.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms