RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 GPBP1L1Q9HC44 474 aaPredicted RBP16.16■□□□□ 0.18
SS18-225ENST00000585121 TRIM35Q9UPQ4 493 aa16.16■□□□□ 0.18
SS18-225ENST00000585121 SCN7AQ01118 1682 aa16.16■□□□□ 0.18
SS18-225ENST00000585121 ERVV-1B6SEH8 477 aa16.15■□□□□ 0.18
SS18-225ENST00000585121 KDM3BQ7LBC6 1761 aa16.15■□□□□ 0.18
SS18-225ENST00000585121 CHL1O00533 1208 aa16.14■□□□□ 0.18
SS18-225ENST00000585121 GTF2E1P29083 439 aaPredicted RBP16.14■□□□□ 0.18
SS18-225ENST00000585121 CALD1Q05682 793 aaKnown RBP16.14■□□□□ 0.18
SS18-225ENST00000585121 CCDC24Q8N4L8 307 aa16.14■□□□□ 0.18
SS18-225ENST00000585121 NRXN2Q9P2S2 1712 aa16.14■□□□□ 0.17
SS18-225ENST00000585121 AFDNP55196 1824 aaKnown RBP16.14■□□□□ 0.17
SS18-225ENST00000585121 MAP3K15Q6ZN16 1313 aa16.14■□□□□ 0.17
SS18-225ENST00000585121 APAF1O14727 1248 aa16.14■□□□□ 0.17
SS18-225ENST00000585121 ZNF526Q8TF50 670 aaPredicted RBP16.14■□□□□ 0.17
SS18-225ENST00000585121 ADCY9O60503 1353 aa16.13■□□□□ 0.17
SS18-225ENST00000585121 HLFQ16534 295 aa16.13■□□□□ 0.17
SS18-225ENST00000585121 NYXQ9GZU5 481 aa16.13■□□□□ 0.17
SS18-225ENST00000585121 FAM177BA6PVY3 158 aa16.12■□□□□ 0.17
SS18-225ENST00000585121 C9orf131Q5VYM1 1079 aa16.12■□□□□ 0.17
SS18-225ENST00000585121 TTLL7Q6ZT98 887 aa16.12■□□□□ 0.17
SS18-225ENST00000585121 CNKSR1Q969H4 720 aa16.12■□□□□ 0.17
SS18-225ENST00000585121 CFAP44Q96MT7 982 aa16.12■□□□□ 0.17
SS18-225ENST00000585121 LAMB4A4D0S4 1761 aa16.11■□□□□ 0.17
SS18-225ENST00000585121 C1QTNF8P60827 252 aa16.11■□□□□ 0.17
SS18-225ENST00000585121 MASTLQ96GX5 879 aa16.11■□□□□ 0.17
SS18-225ENST00000585121 ZBTB3Q9H5J0 574 aa16.11■□□□□ 0.17
SS18-225ENST00000585121 STYK1Q6J9G0 422 aa16.1■□□□□ 0.17
SS18-225ENST00000585121 NECTIN2Q92692 538 aa16.1■□□□□ 0.17
SS18-225ENST00000585121 RNF181Q9P0P0 153 aa16.1■□□□□ 0.17
SS18-225ENST00000585121 BCORQ6W2J9 1755 aa16.1■□□□□ 0.17
SS18-225ENST00000585121 BRCA1P38398 1863 aaKnown RBP16.09■□□□□ 0.17
SS18-225ENST00000585121 HOXB7P09629 217 aa16.09■□□□□ 0.17
SS18-225ENST00000585121 GNAI1P63096 354 aa16.09■□□□□ 0.17
SS18-225ENST00000585121 MRS2Q9HD23 443 aa16.09■□□□□ 0.17
SS18-225ENST00000585121 ARFGEF1Q9Y6D6 1849 aa16.09■□□□□ 0.17
SS18-225ENST00000585121 SRGNP10124 158 aa16.09■□□□□ 0.17
SS18-225ENST00000585121 PDIA6Q15084 440 aa16.09■□□□□ 0.17
SS18-225ENST00000585121 GIGYF2Q6Y7W6 1299 aaKnown RBP16.09■□□□□ 0.17
SS18-225ENST00000585121 IFT57Q9NWB7 429 aa16.09■□□□□ 0.17
SS18-225ENST00000585121 NPR1P16066 1061 aa16.08■□□□□ 0.16
SS18-225ENST00000585121 GPTP24298 496 aa16.08■□□□□ 0.16
SS18-225ENST00000585121 SOGA3Q5TF21 947 aa16.08■□□□□ 0.16
SS18-225ENST00000585121 HDGFL1Q5TGJ6 251 aa16.08■□□□□ 0.16
SS18-225ENST00000585121 DDX21Q9NR30 783 aaKnown RBP eCLIP16.08■□□□□ 0.16
SS18-225ENST00000585121 ZNF219Q9P2Y4 722 aaPredicted RBP16.08■□□□□ 0.16
SS18-225ENST00000585121 C21orf2O43822 256 aa16.07■□□□□ 0.16
SS18-225ENST00000585121 ANXA1P04083 346 aa16.07■□□□□ 0.16
SS18-225ENST00000585121 LMNB1P20700 586 aa16.07■□□□□ 0.16
SS18-225ENST00000585121 AIMP1Q12904 312 aaKnown RBP16.07■□□□□ 0.16
SS18-225ENST00000585121 KRT24Q2M2I5 525 aa16.07■□□□□ 0.16
SS18-225ENST00000585121 PROSER3Q2NL68 480 aa16.07■□□□□ 0.16
SS18-225ENST00000585121 CCDC184Q52MB2 194 aa16.07■□□□□ 0.16
SS18-225ENST00000585121 PARP10Q53GL7 1025 aa16.07■□□□□ 0.16
SS18-225ENST00000585121 HSP90AB3PQ58FF7 597 aa16.07■□□□□ 0.16
SS18-225ENST00000585121 PPP1R42Q7Z4L9 355 aa16.07■□□□□ 0.16
SS18-225ENST00000585121 MBIPQ9NS73 344 aa16.07■□□□□ 0.16
SS18-225ENST00000585121 RASSF7Q02833 373 aa16.06■□□□□ 0.16
SS18-225ENST00000585121 COPS6Q7L5N1 327 aa16.06■□□□□ 0.16
SS18-225ENST00000585121 XAGE3Q8WTP9 111 aa16.06■□□□□ 0.16
SS18-225ENST00000585121 CHMP4AQ9BY43 222 aa16.06■□□□□ 0.16
SS18-225ENST00000585121 KLRG2A4D1S0 409 aaPredicted RBP16.05■□□□□ 0.16
SS18-225ENST00000585121 ZNF853P0CG23 659 aa16.05■□□□□ 0.16
SS18-225ENST00000585121 ALDH1B1P30837 517 aa16.05■□□□□ 0.16
SS18-225ENST00000585121 DUSP27Q5VZP5 1158 aa16.05■□□□□ 0.16
SS18-225ENST00000585121 PRPF40BQ6NWY9 871 aaKnown RBP16.05■□□□□ 0.16
SS18-225ENST00000585121 LRP10Q7Z4F1 713 aa16.05■□□□□ 0.16
SS18-225ENST00000585121 ZNF34Q8IZ26 560 aa16.05■□□□□ 0.16
SS18-225ENST00000585121 DBF4Q9UBU7 674 aaPredicted RBP16.05■□□□□ 0.16
SS18-225ENST00000585121 NUTM1Q86Y26 1132 aa16.04■□□□□ 0.16
SS18-225ENST00000585121 CHPF2Q9P2E5 772 aa16.04■□□□□ 0.16
SS18-225ENST00000585121 KDM2BQ8NHM5 1336 aa16.04■□□□□ 0.16
SS18-225ENST00000585121 ZC3H4Q9UPT8 1303 aaKnown RBP16.04■□□□□ 0.16
SS18-225ENST00000585121 IBTKQ9P2D0 1353 aaPredicted RBP16.04■□□□□ 0.16
SS18-225ENST00000585121 ERFEQ4G0M1 354 aa16.04■□□□□ 0.16
SS18-225ENST00000585121 SUSD4Q5VX71 490 aa16.04■□□□□ 0.16
SS18-225ENST00000585121 UTP14AQ9BVJ6 771 aaKnown RBP16.04■□□□□ 0.16
SS18-225ENST00000585121 HYPKQ9NX55 129 aa16.04■□□□□ 0.16
SS18-225ENST00000585121 DLEC1Q9Y238 1755 aa16.03■□□□□ 0.16
SS18-225ENST00000585121 NFKBIEO00221 500 aa16.03■□□□□ 0.16
SS18-225ENST00000585121 ANKRD31Q8N7Z5 1873 aa16.03■□□□□ 0.16
SS18-225ENST00000585121 UBN2Q6ZU65 1347 aa16.03■□□□□ 0.16
SS18-225ENST00000585121 SENP3-EIF4A1A0A087X0R7 540 aa16.02■□□□□ 0.15
SS18-225ENST00000585121 CCDC27Q2M243 656 aa16.02■□□□□ 0.15
SS18-225ENST00000585121 CCDC93Q567U6 631 aa16.02■□□□□ 0.15
SS18-225ENST00000585121 RPGRQ92834 1020 aaKnown RBP16.02■□□□□ 0.15
SS18-225ENST00000585121 TAOK3Q9H2K8 898 aa16.02■□□□□ 0.15
SS18-225ENST00000585121 NTSR2O95665 410 aa16.01■□□□□ 0.15
SS18-225ENST00000585121 C16orf71Q8IYS4 520 aaPredicted RBP16.01■□□□□ 0.15
SS18-225ENST00000585121 ELL2O00472 640 aaPredicted RBP16■□□□□ 0.15
SS18-225ENST00000585121 KIF3CO14782 793 aa16■□□□□ 0.15
SS18-225ENST00000585121 TCIRG1Q13488 830 aa16■□□□□ 0.15
SS18-225ENST00000585121 CRY2Q49AN0 593 aa16■□□□□ 0.15
SS18-225ENST00000585121 NCBP3Q53F19 620 aaKnown RBP16■□□□□ 0.15
SS18-225ENST00000585121 ANKRD13DQ6ZTN6 518 aa16■□□□□ 0.15
SS18-225ENST00000585121 PLBD2Q8NHP8 589 aa16■□□□□ 0.15
SS18-225ENST00000585121 RBM17Q96I25 401 aaKnown RBP16■□□□□ 0.15
SS18-225ENST00000585121 NLRP3Q96P20 1036 aa16■□□□□ 0.15
SS18-225ENST00000585121 RNF123Q5XPI4 1314 aa16■□□□□ 0.15
SS18-225ENST00000585121 LTBP3Q9NS15 1303 aa16■□□□□ 0.15
SS18-225ENST00000585121 DPY19L2Q6NUT2 758 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 314 ms