RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 GPC6Q9Y625 555 aaPredicted RBP8.54□□□□□ -1.04
SMCHD1-204ENST00000581226 ZNF837Q96EG3 531 aaPredicted RBP8.53□□□□□ -1.04
SMCHD1-204ENST00000581226 SEPT3Q9UH03 358 aa8.53□□□□□ -1.04
SMCHD1-204ENST00000581226 BRD1O95696 1058 aa8.52□□□□□ -1.05
SMCHD1-204ENST00000581226 THBS1P07996 1170 aa8.52□□□□□ -1.05
SMCHD1-204ENST00000581226 FOXR1Q6PIV2 292 aa8.52□□□□□ -1.05
SMCHD1-204ENST00000581226 LRRC69Q6ZNQ3 347 aa8.52□□□□□ -1.05
SMCHD1-204ENST00000581226 NLRP8Q86W28 1048 aa8.52□□□□□ -1.05
SMCHD1-204ENST00000581226 HOMEZQ8IX15 550 aa8.52□□□□□ -1.05
SMCHD1-204ENST00000581226 NANOS1Q8WY41 292 aaKnown RBP8.52□□□□□ -1.05
SMCHD1-204ENST00000581226 GTPBP3Q969Y2 492 aaKnown RBP8.52□□□□□ -1.05
SMCHD1-204ENST00000581226 KLRG1Q96E93 195 aa8.52□□□□□ -1.05
SMCHD1-204ENST00000581226 MTMR7Q9Y216 660 aa8.52□□□□□ -1.05
SMCHD1-204ENST00000581226 DGKZQ13574 1117 aa8.51□□□□□ -1.05
SMCHD1-204ENST00000581226 COX20Q5RI15 118 aa8.51□□□□□ -1.05
SMCHD1-204ENST00000581226 C16orf46Q6P387 395 aa8.51□□□□□ -1.05
SMCHD1-204ENST00000581226 MYO19Q96H55 970 aa8.51□□□□□ -1.05
SMCHD1-204ENST00000581226 SUSD3Q96L08 255 aa8.51□□□□□ -1.05
SMCHD1-204ENST00000581226 SAP130Q9H0E3 1048 aa8.51□□□□□ -1.05
SMCHD1-204ENST00000581226 KLK14Q9P0G3 267 aa8.51□□□□□ -1.05
SMCHD1-204ENST00000581226 ANKIB1Q9P2G1 1089 aa8.51□□□□□ -1.05
SMCHD1-204ENST00000581226 LRFN2Q9ULH4 789 aa8.51□□□□□ -1.05
SMCHD1-204ENST00000581226 ARID4AP29374 1257 aaPredicted RBP8.5□□□□□ -1.05
SMCHD1-204ENST00000581226 HIF1AQ16665 826 aa8.5□□□□□ -1.05
SMCHD1-204ENST00000581226 C11orf91Q3C1V1 193 aa8.5□□□□□ -1.05
SMCHD1-204ENST00000581226 FIGNL1Q6PIW4 674 aa8.5□□□□□ -1.05
SMCHD1-204ENST00000581226 ZNF280CQ8ND82 737 aa8.5□□□□□ -1.05
SMCHD1-204ENST00000581226 HSH2DQ96JZ2 352 aa8.5□□□□□ -1.05
SMCHD1-204ENST00000581226 ZCCHC2Q9C0B9 1178 aaKnown RBP8.5□□□□□ -1.05
SMCHD1-204ENST00000581226 GTF3C2Q8WUA4 911 aaPredicted RBP8.49□□□□□ -1.05
SMCHD1-204ENST00000581226 IRF7Q92985 503 aa8.49□□□□□ -1.05
SMCHD1-204ENST00000581226 TRERF1Q96PN7 1200 aa8.49□□□□□ -1.05
SMCHD1-204ENST00000581226 PCDHGC4Q9Y5F7 938 aa8.49□□□□□ -1.05
SMCHD1-204ENST00000581226 GPR25O00155 361 aa8.48□□□□□ -1.05
SMCHD1-204ENST00000581226 ATXN7O15265 892 aaPredicted RBP8.48□□□□□ -1.05
SMCHD1-204ENST00000581226 UBAP2LQ14157 1087 aaKnown RBP8.48□□□□□ -1.05
SMCHD1-204ENST00000581226 GPR161Q8N6U8 529 aaKnown RBP8.48□□□□□ -1.05
SMCHD1-204ENST00000581226 ERBB4Q15303 1308 aa8.48□□□□□ -1.05
SMCHD1-204ENST00000581226 ABL1P00519 1130 aa8.47□□□□□ -1.05
SMCHD1-204ENST00000581226 VSIG8P0DPA2 414 aa8.47□□□□□ -1.05
SMCHD1-204ENST00000581226 IFT43Q96FT9 208 aa8.47□□□□□ -1.05
SMCHD1-204ENST00000581226 BCS1LQ9Y276 419 aa8.47□□□□□ -1.05
SMCHD1-204ENST00000581226 FAM181BA6NEQ2 426 aa8.46□□□□□ -1.06
SMCHD1-204ENST00000581226 TGFBR3LH3BV60 316 aa8.46□□□□□ -1.06
SMCHD1-204ENST00000581226 BRD2P25440 801 aaKnown RBP8.46□□□□□ -1.06
SMCHD1-204ENST00000581226 SAMD5Q5TGI4 173 aa8.46□□□□□ -1.06
SMCHD1-204ENST00000581226 CCER1Q8TC90 406 aaPredicted RBP8.46□□□□□ -1.06
SMCHD1-204ENST00000581226 CEP63Q96MT8 703 aa8.46□□□□□ -1.06
SMCHD1-204ENST00000581226 CFHR5Q9BXR6 569 aa8.46□□□□□ -1.06
SMCHD1-204ENST00000581226 PHF24Q9UPV7 400 aa8.46□□□□□ -1.06
SMCHD1-204ENST00000581226 DCDC2BA2VCK2 349 aa8.45□□□□□ -1.06
SMCHD1-204ENST00000581226 TNFRSF10BO14763 440 aa8.45□□□□□ -1.06
SMCHD1-204ENST00000581226 KHNYNO15037 678 aaKnown RBP8.45□□□□□ -1.06
SMCHD1-204ENST00000581226 BNIP3LO60238 219 aa8.45□□□□□ -1.06
SMCHD1-204ENST00000581226 TXNDC2Q86VQ3 553 aa8.45□□□□□ -1.06
SMCHD1-204ENST00000581226 AEBP1Q8IUX7 1158 aa8.45□□□□□ -1.06
SMCHD1-204ENST00000581226 HELQQ8TDG4 1101 aa8.45□□□□□ -1.06
SMCHD1-204ENST00000581226 ABHD17AQ96GS6 310 aa8.45□□□□□ -1.06
SMCHD1-204ENST00000581226 STIM2Q9P246 746 aa8.45□□□□□ -1.06
SMCHD1-204ENST00000581226 ATXN7L1Q9ULK2 861 aaPredicted RBP8.45□□□□□ -1.06
SMCHD1-204ENST00000581226 DNMT3AQ9Y6K1 912 aaPredicted RBP8.45□□□□□ -1.06
SMCHD1-204ENST00000581226 FAM157BP0CG42 384 aa8.44□□□□□ -1.06
SMCHD1-204ENST00000581226 MAPTP10636 758 aaKnown RBP8.44□□□□□ -1.06
SMCHD1-204ENST00000581226 SERPINB4P48594 390 aa8.44□□□□□ -1.06
SMCHD1-204ENST00000581226 TNP2Q05952 138 aa8.44□□□□□ -1.06
SMCHD1-204ENST00000581226 KCNA1Q09470 495 aa8.44□□□□□ -1.06
SMCHD1-204ENST00000581226 IER5Q5VY09 327 aa8.44□□□□□ -1.06
SMCHD1-204ENST00000581226 BTLAQ7Z6A9 289 aa8.44□□□□□ -1.06
SMCHD1-204ENST00000581226 ANO2Q9NQ90 1003 aa8.44□□□□□ -1.06
SMCHD1-204ENST00000581226 NDFIP2Q9NV92 336 aa8.44□□□□□ -1.06
SMCHD1-204ENST00000581226 MICAL2O94851 1124 aa8.43□□□□□ -1.06
SMCHD1-204ENST00000581226 ZNF211Q13398 564 aaPredicted RBP8.43□□□□□ -1.06
SMCHD1-204ENST00000581226 MTMR3Q13615 1198 aa8.43□□□□□ -1.06
SMCHD1-204ENST00000581226 TREML1Q86YW5 311 aa8.43□□□□□ -1.06
SMCHD1-204ENST00000581226 ETFBKMTQ8IXQ9 262 aa8.43□□□□□ -1.06
SMCHD1-204ENST00000581226 COL25A1Q9BXS0 654 aaPredicted RBP8.43□□□□□ -1.06
SMCHD1-204ENST00000581226 BRD7Q9NPI1 651 aa8.43□□□□□ -1.06
SMCHD1-204ENST00000581226 DMGDHQ9UI17 866 aaKnown RBP8.43□□□□□ -1.06
SMCHD1-204ENST00000581226 GMPRP36959 345 aa8.42□□□□□ -1.06
SMCHD1-204ENST00000581226 IDH3AP50213 366 aa8.42□□□□□ -1.06
SMCHD1-204ENST00000581226 TYRO3Q06418 890 aa8.42□□□□□ -1.06
SMCHD1-204ENST00000581226 FAM26DQ5JW98 314 aa8.42□□□□□ -1.06
SMCHD1-204ENST00000581226 PATL2C9JE40 543 aaKnown RBP8.41□□□□□ -1.06
SMCHD1-204ENST00000581226 FGFR3P22607 806 aa8.41□□□□□ -1.06
SMCHD1-204ENST00000581226 FKBP4Q02790 459 aaKnown RBP eCLIP8.41□□□□□ -1.06
SMCHD1-204ENST00000581226 SF3B2Q13435 895 aaKnown RBP8.41□□□□□ -1.06
SMCHD1-204ENST00000581226 GAS6Q14393 721 aa8.41□□□□□ -1.06
SMCHD1-204ENST00000581226 RNFT1Q5M7Z0 435 aa8.41□□□□□ -1.06
SMCHD1-204ENST00000581226 KCTD17Q8N5Z5 321 aa8.41□□□□□ -1.06
SMCHD1-204ENST00000581226 ABTB2Q8N961 1025 aa8.41□□□□□ -1.06
SMCHD1-204ENST00000581226 ZSCAN1Q8NBB4 408 aa8.41□□□□□ -1.06
SMCHD1-204ENST00000581226 MARK1Q9P0L2 795 aa8.41□□□□□ -1.06
SMCHD1-204ENST00000581226 EGFL7Q9UHF1 273 aa8.41□□□□□ -1.06
SMCHD1-204ENST00000581226 GNEQ9Y223 722 aaKnown RBP8.41□□□□□ -1.06
SMCHD1-204ENST00000581226 ZBTB39O15060 712 aa8.4□□□□□ -1.06
SMCHD1-204ENST00000581226 EFSO43281 561 aa8.4□□□□□ -1.06
SMCHD1-204ENST00000581226 MX2P20592 715 aa8.4□□□□□ -1.06
SMCHD1-204ENST00000581226 MPSTP25325 297 aa8.4□□□□□ -1.06
SMCHD1-204ENST00000581226 INPP5BP32019 993 aa8.4□□□□□ -1.06
SMCHD1-204ENST00000581226 ARSDP51689 593 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms