RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 GADD45BO75293 160 aaPredicted RBP12.69□□□□□ -0.38
TOP3A-209ENST00000580095 CNTROBQ8N137 903 aa12.69□□□□□ -0.38
TOP3A-209ENST00000580095 CLASRPQ8N2M8 674 aaKnown RBP12.69□□□□□ -0.38
TOP3A-209ENST00000580095 BICC1Q9H694 974 aaKnown RBP12.69□□□□□ -0.38
TOP3A-209ENST00000580095 CCDC9Q9Y3X0 531 aaKnown RBP12.69□□□□□ -0.38
TOP3A-209ENST00000580095 LTN1O94822 1766 aa12.69□□□□□ -0.38
TOP3A-209ENST00000580095 IFIT2P09913 472 aaKnown RBP12.68□□□□□ -0.38
TOP3A-209ENST00000580095 KSR2Q6VAB6 950 aa12.68□□□□□ -0.38
TOP3A-209ENST00000580095 KIAA1211Q6ZU35 1233 aa12.68□□□□□ -0.38
TOP3A-209ENST00000580095 KAZALD1Q96I82 304 aa12.68□□□□□ -0.38
TOP3A-209ENST00000580095 LSG1Q9H089 658 aaKnown RBP12.68□□□□□ -0.38
TOP3A-209ENST00000580095 DIAPH3Q9NSV4 1193 aa12.68□□□□□ -0.38
TOP3A-209ENST00000580095 BRD1O95696 1058 aa12.68□□□□□ -0.38
TOP3A-209ENST00000580095 CUL4AQ13619 759 aa12.68□□□□□ -0.38
TOP3A-209ENST00000580095 ADCK5Q3MIX3 580 aa12.68□□□□□ -0.38
TOP3A-209ENST00000580095 AMOTQ4VCS5 1084 aa12.68□□□□□ -0.38
TOP3A-209ENST00000580095 NDUFB9Q9Y6M9 179 aa12.68□□□□□ -0.38
TOP3A-209ENST00000580095 LARGE1O95461 756 aa12.68□□□□□ -0.38
TOP3A-209ENST00000580095 CASTP20810 708 aaKnown RBP12.68□□□□□ -0.38
TOP3A-209ENST00000580095 AK2P54819 239 aa12.68□□□□□ -0.38
TOP3A-209ENST00000580095 PRPF40BQ6NWY9 871 aaKnown RBP12.68□□□□□ -0.38
TOP3A-209ENST00000580095 ISY1Q9ULR0 285 aaKnown RBP12.68□□□□□ -0.38
TOP3A-209ENST00000580095 ADGRL3Q9HAR2 1447 aa12.68□□□□□ -0.38
TOP3A-209ENST00000580095 ANAPC15P60006 121 aa12.67□□□□□ -0.38
TOP3A-209ENST00000580095 RIC3Q7Z5B4 369 aa12.67□□□□□ -0.38
TOP3A-209ENST00000580095 RAD50Q92878 1312 aa12.67□□□□□ -0.38
TOP3A-209ENST00000580095 EDC3Q96F86 508 aaKnown RBP12.67□□□□□ -0.38
TOP3A-209ENST00000580095 FAM227BQ96M60 508 aa12.67□□□□□ -0.38
TOP3A-209ENST00000580095 TCEANC2Q96MN5 208 aa12.67□□□□□ -0.38
TOP3A-209ENST00000580095 HOXB7P09629 217 aa12.67□□□□□ -0.38
TOP3A-209ENST00000580095 CSB-PGBD3P0DP91 1061 aa12.67□□□□□ -0.38
TOP3A-209ENST00000580095 RUFY3Q7L099 469 aa12.67□□□□□ -0.38
TOP3A-209ENST00000580095 SASH1O94885 1247 aa12.66□□□□□ -0.38
TOP3A-209ENST00000580095 CLCN1P35523 988 aa12.66□□□□□ -0.38
TOP3A-209ENST00000580095 EAF2Q96CJ1 260 aaPredicted RBP12.66□□□□□ -0.38
TOP3A-209ENST00000580095 BOLA2Q9H3K6 86 aa12.66□□□□□ -0.38
TOP3A-209ENST00000580095 PXDNLA1KZ92 1463 aa12.66□□□□□ -0.38
TOP3A-209ENST00000580095 GRM8O00222 908 aa12.66□□□□□ -0.38
TOP3A-209ENST00000580095 CHGBP05060 677 aa12.66□□□□□ -0.38
TOP3A-209ENST00000580095 IGKV5-2P06315 115 aa12.66□□□□□ -0.38
TOP3A-209ENST00000580095 MCM2P49736 904 aa12.66□□□□□ -0.38
TOP3A-209ENST00000580095 PDIA6Q15084 440 aa12.66□□□□□ -0.38
TOP3A-209ENST00000580095 EPHA10Q5JZY3 1008 aa12.66□□□□□ -0.38
TOP3A-209ENST00000580095 MPNDQ8N594 471 aa12.66□□□□□ -0.38
TOP3A-209ENST00000580095 ECHDC1Q9NTX5 307 aa12.66□□□□□ -0.38
TOP3A-209ENST00000580095 AOX1Q06278 1338 aa12.65□□□□□ -0.38
TOP3A-209ENST00000580095 GLRX3O76003 335 aaKnown RBP12.65□□□□□ -0.38
TOP3A-209ENST00000580095 ZNF445P59923 1031 aa12.65□□□□□ -0.38
TOP3A-209ENST00000580095 COPS6Q7L5N1 327 aa12.65□□□□□ -0.38
TOP3A-209ENST00000580095 XAGE3Q8WTP9 111 aa12.65□□□□□ -0.38
TOP3A-209ENST00000580095 RAPGEF4Q8WZA2 1011 aa12.65□□□□□ -0.38
TOP3A-209ENST00000580095 JAKMIP1Q96N16 626 aaKnown RBP12.65□□□□□ -0.38
TOP3A-209ENST00000580095 ZNF790Q6PG37 636 aa12.65□□□□□ -0.38
TOP3A-209ENST00000580095 ZNF496Q96IT1 587 aaPredicted RBP12.65□□□□□ -0.38
TOP3A-209ENST00000580095 MYD88Q99836 296 aa12.65□□□□□ -0.38
TOP3A-209ENST00000580095 USP16Q9Y5T5 823 aa12.65□□□□□ -0.38
TOP3A-209ENST00000580095 TAF6LQ9Y6J9 622 aa12.65□□□□□ -0.38
TOP3A-209ENST00000580095 ATP5J2-PTCD1G3V325 749 aa12.65□□□□□ -0.39
TOP3A-209ENST00000580095 PTCD1O75127 700 aaKnown RBP12.65□□□□□ -0.39
TOP3A-209ENST00000580095 TAF7LQ5H9L4 462 aa12.65□□□□□ -0.39
TOP3A-209ENST00000580095 CCDC83Q8IWF9 413 aa12.65□□□□□ -0.39
TOP3A-209ENST00000580095 NECAB1Q8N987 351 aa12.65□□□□□ -0.39
TOP3A-209ENST00000580095 ANP32BQ92688 251 aaKnown RBP12.65□□□□□ -0.39
TOP3A-209ENST00000580095 PRDM4Q9UKN5 801 aa12.65□□□□□ -0.39
TOP3A-209ENST00000580095 ERBB3P21860 1342 aa12.64□□□□□ -0.39
TOP3A-209ENST00000580095 KCNJ4P48050 445 aa12.64□□□□□ -0.39
TOP3A-209ENST00000580095 HSP90AB4PQ58FF6 505 aa12.64□□□□□ -0.39
TOP3A-209ENST00000580095 USP48Q86UV5 1035 aa12.64□□□□□ -0.39
TOP3A-209ENST00000580095 CNPY2Q9Y2B0 182 aa12.64□□□□□ -0.39
TOP3A-209ENST00000580095 LINS1Q8NG48 757 aa12.64□□□□□ -0.39
TOP3A-209ENST00000580095 DDX21Q9NR30 783 aaKnown RBP eCLIP12.64□□□□□ -0.39
TOP3A-209ENST00000580095 HYPKQ9NX55 129 aa12.64□□□□□ -0.39
TOP3A-209ENST00000580095 G3BP1Q13283 466 aaKnown RBP eCLIP12.63□□□□□ -0.39
TOP3A-209ENST00000580095 TTC14Q96N46 770 aa12.63□□□□□ -0.39
TOP3A-209ENST00000580095 CCDC173Q0VFZ6 552 aa12.63□□□□□ -0.39
TOP3A-209ENST00000580095 INTS4Q96HW7 963 aaKnown RBP12.63□□□□□ -0.39
TOP3A-209ENST00000580095 LMTK3Q96Q04 1460 aa12.63□□□□□ -0.39
TOP3A-209ENST00000580095 ALDH1L1O75891 902 aa12.62□□□□□ -0.39
TOP3A-209ENST00000580095 NMIQ13287 307 aaPredicted RBP12.62□□□□□ -0.39
TOP3A-209ENST00000580095 MTX1Q13505 466 aa12.62□□□□□ -0.39
TOP3A-209ENST00000580095 NPHP4O75161 1426 aaPredicted RBP12.62□□□□□ -0.39
TOP3A-209ENST00000580095 FIBPO43427 364 aa12.62□□□□□ -0.39
TOP3A-209ENST00000580095 MED1Q15648 1581 aaPredicted RBP12.62□□□□□ -0.39
TOP3A-209ENST00000580095 RPAP1Q9BWH6 1393 aaPredicted RBP12.62□□□□□ -0.39
TOP3A-209ENST00000580095 A0A0D9SFI3 127 aa12.61□□□□□ -0.39
TOP3A-209ENST00000580095 SYT1P21579 422 aa12.61□□□□□ -0.39
TOP3A-209ENST00000580095 SLC52A2Q9HAB3 445 aa12.61□□□□□ -0.39
TOP3A-209ENST00000580095 LIMCH1Q9UPQ0 1083 aa12.61□□□□□ -0.39
TOP3A-209ENST00000580095 TTC41PQ6P2S7 1318 aa12.61□□□□□ -0.39
TOP3A-209ENST00000580095 DDX58O95786 925 aaKnown RBP12.61□□□□□ -0.39
TOP3A-209ENST00000580095 UBE3BQ7Z3V4 1068 aa12.61□□□□□ -0.39
TOP3A-209ENST00000580095 PDRG1Q9NUG6 133 aa12.61□□□□□ -0.39
TOP3A-209ENST00000580095 NPHP3Q7Z494 1330 aa12.61□□□□□ -0.39
TOP3A-209ENST00000580095 CHD2O14647 1828 aaKnown RBP12.61□□□□□ -0.39
TOP3A-209ENST00000580095 NEURL1BA8MQ27 555 aa12.61□□□□□ -0.39
TOP3A-209ENST00000580095 LRSAM1Q6UWE0 723 aa12.61□□□□□ -0.39
TOP3A-209ENST00000580095 GPATCH3Q96I76 525 aa12.61□□□□□ -0.39
TOP3A-209ENST00000580095 PPP1R9BQ96SB3 815 aa12.61□□□□□ -0.39
TOP3A-209ENST00000580095 FSD1Q9BTV5 496 aa12.61□□□□□ -0.39
TOP3A-209ENST00000580095 SMC3Q9UQE7 1217 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms