RNA–Protein interactions for RNA: ENST00000578917.1

TRAF4-213, Transcript of TNF receptor associated factor 4, humanhuman

TSL 4

Gene TRAF4, Length 484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-213ENST00000578917 COPS6Q7L5N1 327 aa8.47□□□□□ -1.05
TRAF4-213ENST00000578917 WWC1Q8IX03 1113 aa8.47□□□□□ -1.05
TRAF4-213ENST00000578917 ERBB4Q15303 1308 aa8.47□□□□□ -1.05
TRAF4-213ENST00000578917 ZNF831Q5JPB2 1677 aa8.46□□□□□ -1.05
TRAF4-213ENST00000578917 ADAMTS7Q9UKP4 1686 aa8.46□□□□□ -1.05
TRAF4-213ENST00000578917 ZNF853P0CG23 659 aa8.46□□□□□ -1.06
TRAF4-213ENST00000578917 CCDC27Q2M243 656 aa8.46□□□□□ -1.06
TRAF4-213ENST00000578917 DIEXFQ68CQ4 756 aaKnown RBP8.46□□□□□ -1.06
TRAF4-213ENST00000578917 PRR5LQ6MZQ0 368 aa8.46□□□□□ -1.06
TRAF4-213ENST00000578917 TTLL6Q8N841 843 aa8.46□□□□□ -1.06
TRAF4-213ENST00000578917 XAGE3Q8WTP9 111 aa8.46□□□□□ -1.06
TRAF4-213ENST00000578917 TSR2Q969E8 191 aaKnown RBP8.46□□□□□ -1.06
TRAF4-213ENST00000578917 NYXQ9GZU5 481 aa8.46□□□□□ -1.06
TRAF4-213ENST00000578917 DDX21Q9NR30 783 aaKnown RBP eCLIP8.46□□□□□ -1.06
TRAF4-213ENST00000578917 HYPKQ9NX55 129 aa8.46□□□□□ -1.06
TRAF4-213ENST00000578917 CHPF2Q9P2E5 772 aa8.46□□□□□ -1.06
TRAF4-213ENST00000578917 ZNF219Q9P2Y4 722 aaPredicted RBP8.46□□□□□ -1.06
TRAF4-213ENST00000578917 PDZRN3Q9UPQ7 1066 aa8.46□□□□□ -1.06
TRAF4-213ENST00000578917 UBR3Q6ZT12 1888 aa8.46□□□□□ -1.06
TRAF4-213ENST00000578917 MAP3K15Q6ZN16 1313 aa8.46□□□□□ -1.06
TRAF4-213ENST00000578917 QSER1Q2KHR3 1735 aa8.46□□□□□ -1.06
TRAF4-213ENST00000578917 MYH14Q7Z406 1995 aaKnown RBP8.45□□□□□ -1.06
TRAF4-213ENST00000578917 CICQ96RK0 1608 aaPredicted RBP8.45□□□□□ -1.06
TRAF4-213ENST00000578917 RGL2O15211 777 aa8.45□□□□□ -1.06
TRAF4-213ENST00000578917 HOXB7P09629 217 aa8.45□□□□□ -1.06
TRAF4-213ENST00000578917 KCNA3P22001 575 aa8.45□□□□□ -1.06
TRAF4-213ENST00000578917 PDIA6Q15084 440 aa8.45□□□□□ -1.06
TRAF4-213ENST00000578917 PROSER3Q2NL68 480 aa8.45□□□□□ -1.06
TRAF4-213ENST00000578917 CCDC30Q5VVM6 783 aa8.45□□□□□ -1.06
TRAF4-213ENST00000578917 ANKRD13DQ6ZTN6 518 aa8.45□□□□□ -1.06
TRAF4-213ENST00000578917 PPP1R42Q7Z4L9 355 aa8.45□□□□□ -1.06
TRAF4-213ENST00000578917 C8orf58Q8NAV2 365 aa8.45□□□□□ -1.06
TRAF4-213ENST00000578917 STK31Q9BXU1 1019 aa8.45□□□□□ -1.06
TRAF4-213ENST00000578917 TJP1Q07157 1748 aa8.45□□□□□ -1.06
TRAF4-213ENST00000578917 GOLGA2Q08379 1002 aa8.44□□□□□ -1.06
TRAF4-213ENST00000578917 HSP90AB3PQ58FF7 597 aa8.44□□□□□ -1.06
TRAF4-213ENST00000578917 GIGYF2Q6Y7W6 1299 aaKnown RBP8.44□□□□□ -1.06
TRAF4-213ENST00000578917 RIC3Q7Z5B4 369 aa8.44□□□□□ -1.06
TRAF4-213ENST00000578917 WDR63Q8IWG1 891 aa8.44□□□□□ -1.06
TRAF4-213ENST00000578917 MYH16Q9H6N6 1097 aa8.44□□□□□ -1.06
TRAF4-213ENST00000578917 TUBGCP6Q96RT7 1819 aa8.44□□□□□ -1.06
TRAF4-213ENST00000578917 C10orf71Q711Q0 1435 aa8.44□□□□□ -1.06
TRAF4-213ENST00000578917 COL5A3P25940 1745 aaPredicted RBP8.43□□□□□ -1.06
TRAF4-213ENST00000578917 TCERG1O14776 1098 aaKnown RBP8.43□□□□□ -1.06
TRAF4-213ENST00000578917 DDX58O95786 925 aaKnown RBP8.43□□□□□ -1.06
TRAF4-213ENST00000578917 TWISTNBQ3B726 338 aaPredicted RBP8.43□□□□□ -1.06
TRAF4-213ENST00000578917 ERFEQ4G0M1 354 aa8.43□□□□□ -1.06
TRAF4-213ENST00000578917 NCBP3Q53F19 620 aaKnown RBP8.43□□□□□ -1.06
TRAF4-213ENST00000578917 PARP10Q53GL7 1025 aa8.43□□□□□ -1.06
TRAF4-213ENST00000578917 NUTM1Q86Y26 1132 aa8.43□□□□□ -1.06
TRAF4-213ENST00000578917 RPGRQ92834 1020 aaKnown RBP8.43□□□□□ -1.06
TRAF4-213ENST00000578917 CNKSR1Q969H4 720 aa8.43□□□□□ -1.06
TRAF4-213ENST00000578917 UTP14AQ9BVJ6 771 aaKnown RBP8.43□□□□□ -1.06
TRAF4-213ENST00000578917 TMX4Q9H1E5 349 aaPredicted RBP8.43□□□□□ -1.06
TRAF4-213ENST00000578917 IL16Q14005 1332 aa8.43□□□□□ -1.06
TRAF4-213ENST00000578917 UTRNP46939 3433 aa8.43□□□□□ -1.06
TRAF4-213ENST00000578917 PXDNLA1KZ92 1463 aa8.43□□□□□ -1.06
TRAF4-213ENST00000578917 CCER2I3L3R5 266 aa8.42□□□□□ -1.06
TRAF4-213ENST00000578917 C21orf2O43822 256 aa8.42□□□□□ -1.06
TRAF4-213ENST00000578917 NPR1P16066 1061 aa8.42□□□□□ -1.06
TRAF4-213ENST00000578917 ALDH1B1P30837 517 aa8.42□□□□□ -1.06
TRAF4-213ENST00000578917 TCIRG1Q13488 830 aa8.42□□□□□ -1.06
TRAF4-213ENST00000578917 SUSD4Q5VX71 490 aa8.42□□□□□ -1.06
TRAF4-213ENST00000578917 ZNF34Q8IZ26 560 aa8.42□□□□□ -1.06
TRAF4-213ENST00000578917 TSPYL6Q8N831 410 aa8.42□□□□□ -1.06
TRAF4-213ENST00000578917 ZNF784Q8NCA9 323 aaPredicted RBP8.42□□□□□ -1.06
TRAF4-213ENST00000578917 PLBD2Q8NHP8 589 aa8.42□□□□□ -1.06
TRAF4-213ENST00000578917 ZNF526Q8TF50 670 aaPredicted RBP8.42□□□□□ -1.06
TRAF4-213ENST00000578917 ZNF428Q96B54 188 aa8.42□□□□□ -1.06
TRAF4-213ENST00000578917 MASTLQ96GX5 879 aa8.42□□□□□ -1.06
TRAF4-213ENST00000578917 NLRP3Q96P20 1036 aa8.42□□□□□ -1.06
TRAF4-213ENST00000578917 TRMT112Q9UI30 125 aaKnown RBP8.42□□□□□ -1.06
TRAF4-213ENST00000578917 UBR2Q8IWV8 1755 aa8.41□□□□□ -1.06
TRAF4-213ENST00000578917 ATP5J2-PTCD1G3V325 749 aa8.41□□□□□ -1.06
TRAF4-213ENST00000578917 SLC4A2P04920 1241 aa8.41□□□□□ -1.06
TRAF4-213ENST00000578917 SRGNP10124 158 aa8.41□□□□□ -1.06
TRAF4-213ENST00000578917 EXOSC9Q06265 439 aaKnown RBP8.41□□□□□ -1.06
TRAF4-213ENST00000578917 C9orf131Q5VYM1 1079 aa8.41□□□□□ -1.06
TRAF4-213ENST00000578917 STYK1Q6J9G0 422 aa8.41□□□□□ -1.06
TRAF4-213ENST00000578917 PHAXQ9H814 394 aaKnown RBP8.41□□□□□ -1.06
TRAF4-213ENST00000578917 C4AP0C0L4 1744 aa8.4□□□□□ -1.06
TRAF4-213ENST00000578917 NEXNQ0ZGT2 675 aa8.4□□□□□ -1.06
TRAF4-213ENST00000578917 RTL5Q5HYW3 569 aaPredicted RBP8.4□□□□□ -1.06
TRAF4-213ENST00000578917 SOGA3Q5TF21 947 aa8.4□□□□□ -1.06
TRAF4-213ENST00000578917 PRPF40BQ6NWY9 871 aaKnown RBP8.4□□□□□ -1.06
TRAF4-213ENST00000578917 LRP10Q7Z4F1 713 aa8.4□□□□□ -1.06
TRAF4-213ENST00000578917 MIER1Q8N108 512 aa8.4□□□□□ -1.06
TRAF4-213ENST00000578917 RBM17Q96I25 401 aaKnown RBP8.4□□□□□ -1.06
TRAF4-213ENST00000578917 GPBP1L1Q9HC44 474 aaPredicted RBP8.4□□□□□ -1.06
TRAF4-213ENST00000578917 RNF181Q9P0P0 153 aa8.4□□□□□ -1.06
TRAF4-213ENST00000578917 SIPA1L3O60292 1781 aaPredicted RBP8.4□□□□□ -1.07
TRAF4-213ENST00000578917 UBN2Q6ZU65 1347 aa8.39□□□□□ -1.07
TRAF4-213ENST00000578917 SH3TC1Q8TE82 1336 aa8.39□□□□□ -1.07
TRAF4-213ENST00000578917 FANCIQ9NVI1 1328 aa8.39□□□□□ -1.07
TRAF4-213ENST00000578917 HCLS1P14317 486 aaPredicted RBP8.39□□□□□ -1.07
TRAF4-213ENST00000578917 HSP90B1P14625 803 aaKnown RBP8.39□□□□□ -1.07
TRAF4-213ENST00000578917 LMNB1P20700 586 aa8.39□□□□□ -1.07
TRAF4-213ENST00000578917 NLRP10Q86W26 655 aa8.39□□□□□ -1.07
TRAF4-213ENST00000578917 MYD88Q99836 296 aa8.39□□□□□ -1.07
TRAF4-213ENST00000578917 KLRG2A4D1S0 409 aaPredicted RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms