RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 C8orf58Q8NAV2 365 aa25.07■■□□□ 1.6
SS18-208ENST00000577751 PXDNLA1KZ92 1463 aa25.07■■□□□ 1.6
SS18-208ENST00000577751 MAP3K15Q6ZN16 1313 aa25.07■■□□□ 1.6
SS18-208ENST00000577751 NUP98P52948 1817 aa25.07■■□□□ 1.6
SS18-208ENST00000577751 N4BP2Q86UW6 1770 aaPredicted RBP25.06■■□□□ 1.6
SS18-208ENST00000577751 ANXA1P04083 346 aa25.06■■□□□ 1.6
SS18-208ENST00000577751 HLFQ16534 295 aa25.06■■□□□ 1.6
SS18-208ENST00000577751 MIER1Q8N108 512 aa25.06■■□□□ 1.6
SS18-208ENST00000577751 TSR2Q969E8 191 aaKnown RBP25.06■■□□□ 1.6
SS18-208ENST00000577751 SETDB2Q96T68 719 aa25.06■■□□□ 1.6
SS18-208ENST00000577751 CARMIL3Q8ND23 1372 aa25.05■■□□□ 1.6
SS18-208ENST00000577751 KIF6Q6ZMV9 814 aa25.04■■□□□ 1.6
SS18-208ENST00000577751 CHPF2Q9P2E5 772 aa25.04■■□□□ 1.6
SS18-208ENST00000577751 ELL2O00472 640 aaPredicted RBP25.03■■□□□ 1.6
SS18-208ENST00000577751 DBF4Q9UBU7 674 aaPredicted RBP25.03■■□□□ 1.6
SS18-208ENST00000577751 ZNF521Q96K83 1311 aa25.03■■□□□ 1.6
SS18-208ENST00000577751 BRCA1P38398 1863 aaKnown RBP25.02■■□□□ 1.6
SS18-208ENST00000577751 UTRNP46939 3433 aa25.02■■□□□ 1.6
SS18-208ENST00000577751 GPR162Q16538 588 aa25.02■■□□□ 1.6
SS18-208ENST00000577751 TSPYL6Q8N831 410 aa25.02■■□□□ 1.6
SS18-208ENST00000577751 A0A0G2JLW4 131 aa25.01■■□□□ 1.59
SS18-208ENST00000577751 YBX3P16989 372 aaKnown RBP eCLIP25.01■■□□□ 1.59
SS18-208ENST00000577751 KCNA3P22001 575 aa25.01■■□□□ 1.59
SS18-208ENST00000577751 COPS6Q7L5N1 327 aa25.01■■□□□ 1.59
SS18-208ENST00000577751 ZBTB3Q9H5J0 574 aa25.01■■□□□ 1.59
SS18-208ENST00000577751 SPINK5Q9NQ38 1064 aaPredicted RBP25.01■■□□□ 1.59
SS18-208ENST00000577751 NIP7Q9Y221 180 aaKnown RBP eCLIP25.01■■□□□ 1.59
SS18-208ENST00000577751 GOLGB1Q14789 3259 aaKnown RBP25.01■■□□□ 1.59
SS18-208ENST00000577751 DPEP1P16444 411 aa25■■□□□ 1.59
SS18-208ENST00000577751 PRR5LQ6MZQ0 368 aa25■■□□□ 1.59
SS18-208ENST00000577751 GIGYF2Q6Y7W6 1299 aaKnown RBP25■■□□□ 1.59
SS18-208ENST00000577751 FANCIQ9NVI1 1328 aa25■■□□□ 1.59
SS18-208ENST00000577751 ATP10DQ9P241 1426 aa25■■□□□ 1.59
SS18-208ENST00000577751 ANKRD31Q8N7Z5 1873 aa25■■□□□ 1.59
SS18-208ENST00000577751 XAGE3Q8WTP9 111 aa24.99■■□□□ 1.59
SS18-208ENST00000577751 CHMP4AQ9BY43 222 aa24.99■■□□□ 1.59
SS18-208ENST00000577751 PELP1Q8IZL8 1130 aaKnown RBP24.98■■□□□ 1.59
SS18-208ENST00000577751 HYPKQ9NX55 129 aa24.98■■□□□ 1.59
SS18-208ENST00000577751 AIMP1Q12904 312 aaKnown RBP24.97■■□□□ 1.59
SS18-208ENST00000577751 DLEC1Q9Y238 1755 aa24.96■■□□□ 1.59
SS18-208ENST00000577751 TWISTNBQ3B726 338 aaPredicted RBP24.96■■□□□ 1.59
SS18-208ENST00000577751 CCDC30Q5VVM6 783 aa24.96■■□□□ 1.59
SS18-208ENST00000577751 ZNF34Q8IZ26 560 aa24.96■■□□□ 1.59
SS18-208ENST00000577751 CNBD1Q8NA66 436 aa24.96■■□□□ 1.59
SS18-208ENST00000577751 BRIP1Q9BX63 1249 aa24.96■■□□□ 1.59
SS18-208ENST00000577751 GRIN3BO60391 1043 aa24.95■■□□□ 1.58
SS18-208ENST00000577751 CHRNA5P30532 468 aa24.95■■□□□ 1.58
SS18-208ENST00000577751 GOLGA2Q08379 1002 aa24.95■■□□□ 1.58
SS18-208ENST00000577751 TPTE2Q6XPS3 522 aa24.95■■□□□ 1.58
SS18-208ENST00000577751 NBPF5PQ86XG9 351 aaPredicted RBP24.95■■□□□ 1.58
SS18-208ENST00000577751 ANKRD36CQ5JPF3 1778 aa24.95■■□□□ 1.58
SS18-208ENST00000577751 MYH16Q9H6N6 1097 aa24.94■■□□□ 1.58
SS18-208ENST00000577751 PIM2Q9P1W9 311 aa24.94■■□□□ 1.58
SS18-208ENST00000577751 UBN2Q6ZU65 1347 aa24.93■■□□□ 1.58
SS18-208ENST00000577751 CCDC24Q8N4L8 307 aa24.93■■□□□ 1.58
SS18-208ENST00000577751 PLBD2Q8NHP8 589 aa24.93■■□□□ 1.58
SS18-208ENST00000577751 WWC3Q9ULE0 1092 aa24.93■■□□□ 1.58
SS18-208ENST00000577751 CHD4Q14839 1912 aa24.92■■□□□ 1.58
SS18-208ENST00000577751 VAMP4O75379 141 aa24.92■■□□□ 1.58
SS18-208ENST00000577751 PDE6BP35913 854 aa24.92■■□□□ 1.58
SS18-208ENST00000577751 ST5P78524 1137 aa24.92■■□□□ 1.58
SS18-208ENST00000577751 EXOSC9Q06265 439 aaKnown RBP24.92■■□□□ 1.58
SS18-208ENST00000577751 ANKRD13DQ6ZTN6 518 aa24.92■■□□□ 1.58
SS18-208ENST00000577751 PHAXQ9H814 394 aaKnown RBP24.92■■□□□ 1.58
SS18-208ENST00000577751 PDZRN3Q9UPQ7 1066 aa24.92■■□□□ 1.58
SS18-208ENST00000577751 IBTKQ9P2D0 1353 aaPredicted RBP24.92■■□□□ 1.58
SS18-208ENST00000577751 GPTP24298 496 aa24.91■■□□□ 1.58
SS18-208ENST00000577751 HSP90AB3PQ58FF7 597 aa24.91■■□□□ 1.58
SS18-208ENST00000577751 ARFGEF1Q9Y6D6 1849 aa24.91■■□□□ 1.58
SS18-208ENST00000577751 H0YIN7 160 aa24.9■■□□□ 1.58
SS18-208ENST00000577751 NPHP1O15259 732 aa24.9■■□□□ 1.58
SS18-208ENST00000577751 TCIRG1Q13488 830 aa24.9■■□□□ 1.58
SS18-208ENST00000577751 PARP10Q53GL7 1025 aa24.9■■□□□ 1.58
SS18-208ENST00000577751 SUSD4Q5VX71 490 aa24.9■■□□□ 1.58
SS18-208ENST00000577751 C2CD5Q86YS7 1000 aa24.9■■□□□ 1.58
SS18-208ENST00000577751 NYXQ9GZU5 481 aa24.9■■□□□ 1.58
SS18-208ENST00000577751 COL11A2P13942 1736 aaPredicted RBP24.89■■□□□ 1.58
SS18-208ENST00000577751 FAM177BA6PVY3 158 aa24.89■■□□□ 1.58
SS18-208ENST00000577751 BCS1LQ9Y276 419 aa24.89■■□□□ 1.58
SS18-208ENST00000577751 ARFGEF2Q9Y6D5 1785 aa24.88■■□□□ 1.57
SS18-208ENST00000577751 CACNA1FO60840 1977 aa24.88■■□□□ 1.57
SS18-208ENST00000577751 KLRG2A4D1S0 409 aaPredicted RBP24.87■■□□□ 1.57
SS18-208ENST00000577751 NTSR2O95665 410 aa24.87■■□□□ 1.57
SS18-208ENST00000577751 DALRD3Q5D0E6 543 aaKnown RBP24.87■■□□□ 1.57
SS18-208ENST00000577751 PPP1R42Q7Z4L9 355 aa24.87■■□□□ 1.57
SS18-208ENST00000577751 STK31Q9BXU1 1019 aa24.87■■□□□ 1.57
SS18-208ENST00000577751 E9PSI1 815 aa24.86■■□□□ 1.57
SS18-208ENST00000577751 NLRP10Q86W26 655 aa24.86■■□□□ 1.57
SS18-208ENST00000577751 TCERG1O14776 1098 aaKnown RBP24.85■■□□□ 1.57
SS18-208ENST00000577751 SRGNP10124 158 aa24.85■■□□□ 1.57
SS18-208ENST00000577751 GTF2E1P29083 439 aaPredicted RBP24.85■■□□□ 1.57
SS18-208ENST00000577751 SLFN5Q08AF3 891 aa24.85■■□□□ 1.57
SS18-208ENST00000577751 ERFEQ4G0M1 354 aa24.85■■□□□ 1.57
SS18-208ENST00000577751 NUTM1Q86Y26 1132 aa24.85■■□□□ 1.57
SS18-208ENST00000577751 ISCA1Q9BUE6 129 aa24.85■■□□□ 1.57
SS18-208ENST00000577751 SLC4A2P04920 1241 aa24.84■■□□□ 1.57
SS18-208ENST00000577751 TTLL6Q8N841 843 aa24.84■■□□□ 1.57
SS18-208ENST00000577751 RIC1Q4ADV7 1423 aa24.84■■□□□ 1.57
SS18-208ENST00000577751 ABCC12Q96J65 1359 aa24.83■■□□□ 1.57
SS18-208ENST00000577751 TNRC6CQ9HCJ0 1690 aaKnown RBP24.83■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms