RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 GPAT2Q6NUI2 795 aa10.5□□□□□ -0.73
SMCHD1-202ENST00000577300 CALR3Q96L12 384 aaKnown RBP10.5□□□□□ -0.73
SMCHD1-202ENST00000577300 CHMP3Q9Y3E7 222 aa10.5□□□□□ -0.73
SMCHD1-202ENST00000577300 RASA1P20936 1047 aa10.49□□□□□ -0.73
SMCHD1-202ENST00000577300 AMPD1P23109 780 aa10.49□□□□□ -0.73
SMCHD1-202ENST00000577300 LRRC69Q6ZNQ3 347 aa10.49□□□□□ -0.73
SMCHD1-202ENST00000577300 TSEN2Q8NCE0 465 aaKnown RBP10.49□□□□□ -0.73
SMCHD1-202ENST00000577300 BTBD6Q96KE9 485 aa10.49□□□□□ -0.73
SMCHD1-202ENST00000577300 PPP1R12CQ9BZL4 782 aa10.49□□□□□ -0.73
SMCHD1-202ENST00000577300 RRAGCQ9HB90 399 aa10.49□□□□□ -0.73
SMCHD1-202ENST00000577300 STRN4Q9NRL3 753 aa10.49□□□□□ -0.73
SMCHD1-202ENST00000577300 KLF15Q9UIH9 416 aa10.49□□□□□ -0.73
SMCHD1-202ENST00000577300 SFI1A8K8P3 1242 aa10.48□□□□□ -0.73
SMCHD1-202ENST00000577300 ZNF468Q5VIY5 522 aaPredicted RBP10.48□□□□□ -0.73
SMCHD1-202ENST00000577300 RHPN1Q8TCX5 695 aa10.48□□□□□ -0.73
SMCHD1-202ENST00000577300 NEUROD4Q9HD90 331 aa10.48□□□□□ -0.73
SMCHD1-202ENST00000577300 PLA2G4EQ3MJ16 856 aa10.47□□□□□ -0.73
SMCHD1-202ENST00000577300 LINC00114Q6XXX2 140 aa10.47□□□□□ -0.73
SMCHD1-202ENST00000577300 ALYREFQ86V81 257 aaKnown RBP10.47□□□□□ -0.73
SMCHD1-202ENST00000577300 FCHSD1Q86WN1 690 aa10.47□□□□□ -0.73
SMCHD1-202ENST00000577300 STAG2Q8N3U4 1231 aa10.47□□□□□ -0.73
SMCHD1-202ENST00000577300 SEC13P55735 322 aa10.46□□□□□ -0.73
SMCHD1-202ENST00000577300 GAS2L2Q8NHY3 880 aa10.46□□□□□ -0.73
SMCHD1-202ENST00000577300 PRR12Q9ULL5 1215 aa10.46□□□□□ -0.73
SMCHD1-202ENST00000577300 PIK3R2O00459 728 aa10.45□□□□□ -0.74
SMCHD1-202ENST00000577300 C21orf2O43822 256 aa10.45□□□□□ -0.74
SMCHD1-202ENST00000577300 PPP1R12BO60237 982 aaPredicted RBP10.45□□□□□ -0.74
SMCHD1-202ENST00000577300 KANK4Q5T7N3 995 aaPredicted RBP10.45□□□□□ -0.74
SMCHD1-202ENST00000577300 LARP1Q6PKG0 1096 aaKnown RBP10.45□□□□□ -0.74
SMCHD1-202ENST00000577300 PHACTR1Q9C0D0 580 aa10.45□□□□□ -0.74
SMCHD1-202ENST00000577300 HCN4Q9Y3Q4 1203 aa10.45□□□□□ -0.74
SMCHD1-202ENST00000577300 ATAD2Q6PL18 1390 aa10.44□□□□□ -0.74
SMCHD1-202ENST00000577300 ITGB2P05107 769 aa10.44□□□□□ -0.74
SMCHD1-202ENST00000577300 DGKGP49619 791 aa10.44□□□□□ -0.74
SMCHD1-202ENST00000577300 CHSY3Q70JA7 882 aa10.44□□□□□ -0.74
SMCHD1-202ENST00000577300 ANKIB1Q9P2G1 1089 aa10.44□□□□□ -0.74
SMCHD1-202ENST00000577300 GNB5O14775 395 aa10.43□□□□□ -0.74
SMCHD1-202ENST00000577300 PCBP4P57723 403 aaKnown RBP10.43□□□□□ -0.74
SMCHD1-202ENST00000577300 PTK7Q13308 1070 aa10.43□□□□□ -0.74
SMCHD1-202ENST00000577300 C2orf49Q9BVC5 232 aaPredicted RBP10.43□□□□□ -0.74
SMCHD1-202ENST00000577300 FAM196BA6NMK8 535 aa10.42□□□□□ -0.74
SMCHD1-202ENST00000577300 COL8A1P27658 744 aa10.42□□□□□ -0.74
SMCHD1-202ENST00000577300 CRTC2Q53ET0 693 aaPredicted RBP10.42□□□□□ -0.74
SMCHD1-202ENST00000577300 MSTNO14793 375 aa10.41□□□□□ -0.74
SMCHD1-202ENST00000577300 SFSWAPQ12872 951 aaKnown RBP10.41□□□□□ -0.74
SMCHD1-202ENST00000577300 SUZ12Q15022 739 aaKnown RBP10.41□□□□□ -0.74
SMCHD1-202ENST00000577300 SCG3Q8WXD2 468 aaKnown RBP10.41□□□□□ -0.74
SMCHD1-202ENST00000577300 USP17L15C9J2P7 530 aa10.4□□□□□ -0.74
SMCHD1-202ENST00000577300 USP17L10C9JJH3 530 aa10.4□□□□□ -0.74
SMCHD1-202ENST00000577300 USP17L13C9JLJ4 530 aa10.4□□□□□ -0.74
SMCHD1-202ENST00000577300 USP17L12C9JPN9 530 aa10.4□□□□□ -0.74
SMCHD1-202ENST00000577300 USP17L11C9JVI0 530 aa10.4□□□□□ -0.74
SMCHD1-202ENST00000577300 USP17L21D6R901 530 aa10.4□□□□□ -0.74
SMCHD1-202ENST00000577300 USP17L18D6R9N7 530 aa10.4□□□□□ -0.74
SMCHD1-202ENST00000577300 USP17L22D6RA61 530 aa10.4□□□□□ -0.74
SMCHD1-202ENST00000577300 USP17L17D6RBQ6 530 aa10.4□□□□□ -0.74
SMCHD1-202ENST00000577300 USP17L19D6RCP7 530 aa10.4□□□□□ -0.74
SMCHD1-202ENST00000577300 USP17L20D6RJB6 530 aa10.4□□□□□ -0.74
SMCHD1-202ENST00000577300 SIN3BO75182 1162 aa10.4□□□□□ -0.74
SMCHD1-202ENST00000577300 LMOD1P29536 600 aaPredicted RBP10.4□□□□□ -0.74
SMCHD1-202ENST00000577300 USP17L24Q0WX57 530 aa10.4□□□□□ -0.74
SMCHD1-202ENST00000577300 DPYDQ12882 1025 aa10.4□□□□□ -0.74
SMCHD1-202ENST00000577300 SYT9Q86SS6 491 aa10.4□□□□□ -0.74
SMCHD1-202ENST00000577300 ALDH16A1Q8IZ83 802 aa10.4□□□□□ -0.74
SMCHD1-202ENST00000577300 HSH2DQ96JZ2 352 aa10.4□□□□□ -0.74
SMCHD1-202ENST00000577300 SUSD3Q96L08 255 aa10.4□□□□□ -0.74
SMCHD1-202ENST00000577300 MDFIQ99750 246 aa10.4□□□□□ -0.74
SMCHD1-202ENST00000577300 SUV39H2Q9H5I1 410 aa10.4□□□□□ -0.74
SMCHD1-202ENST00000577300 VRTNQ9H8Y1 702 aa10.4□□□□□ -0.74
SMCHD1-202ENST00000577300 ELOA3CA0A087WX78 387 aaPredicted RBP10.39□□□□□ -0.75
SMCHD1-202ENST00000577300 KRBA1A5PL33 1030 aa10.39□□□□□ -0.75
SMCHD1-202ENST00000577300 ELOA3DA6NLF2 546 aaPredicted RBP10.39□□□□□ -0.75
SMCHD1-202ENST00000577300 KCNQ4P56696 695 aa10.39□□□□□ -0.75
SMCHD1-202ENST00000577300 ELOA3BQ3SY89 546 aa10.39□□□□□ -0.75
SMCHD1-202ENST00000577300 ANKMY2Q8IV38 441 aa10.39□□□□□ -0.75
SMCHD1-202ENST00000577300 ELOA3Q8NG57 546 aa10.39□□□□□ -0.75
SMCHD1-202ENST00000577300 SPOCK3Q9BQ16 436 aa10.39□□□□□ -0.75
SMCHD1-202ENST00000577300 BRD7Q9NPI1 651 aa10.39□□□□□ -0.75
SMCHD1-202ENST00000577300 TYRO3Q06418 890 aa10.38□□□□□ -0.75
SMCHD1-202ENST00000577300 GRIN2CQ14957 1233 aa10.38□□□□□ -0.75
SMCHD1-202ENST00000577300 HIF1AQ16665 826 aa10.38□□□□□ -0.75
SMCHD1-202ENST00000577300 ZNF280CQ8ND82 737 aa10.38□□□□□ -0.75
SMCHD1-202ENST00000577300 CEP63Q96MT8 703 aa10.38□□□□□ -0.75
SMCHD1-202ENST00000577300 SLC30A3Q99726 388 aa10.38□□□□□ -0.75
SMCHD1-202ENST00000577300 HINFPQ9BQA5 517 aa10.38□□□□□ -0.75
SMCHD1-202ENST00000577300 NOP53Q9NZM5 478 aaKnown RBP10.38□□□□□ -0.75
SMCHD1-202ENST00000577300 ADARB2-AS1A8MUL3 147 aa10.37□□□□□ -0.75
SMCHD1-202ENST00000577300 PROCP04070 461 aa10.37□□□□□ -0.75
SMCHD1-202ENST00000577300 IGFBP4P22692 258 aa10.37□□□□□ -0.75
SMCHD1-202ENST00000577300 ALAS2P22557 587 aa10.36□□□□□ -0.75
SMCHD1-202ENST00000577300 SPEM2Q0P670 501 aa10.36□□□□□ -0.75
SMCHD1-202ENST00000577300 CHMP7Q8WUX9 453 aaPredicted RBP10.36□□□□□ -0.75
SMCHD1-202ENST00000577300 TNFRSF25Q93038 417 aa10.36□□□□□ -0.75
SMCHD1-202ENST00000577300 KCNH4Q9UQ05 1017 aa10.36□□□□□ -0.75
SMCHD1-202ENST00000577300 NEUROD1Q13562 356 aa10.35□□□□□ -0.75
SMCHD1-202ENST00000577300 CFAP70Q5T0N1 1121 aa10.35□□□□□ -0.75
SMCHD1-202ENST00000577300 ARXQ96QS3 562 aa10.35□□□□□ -0.75
SMCHD1-202ENST00000577300 RTN1Q16799 776 aa10.34□□□□□ -0.75
SMCHD1-202ENST00000577300 ZNF777Q9ULD5 760 aaPredicted RBP10.34□□□□□ -0.75
SMCHD1-202ENST00000577300 IER5Q5VY09 327 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms