RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 NECTIN2Q92692 538 aa12.3□□□□□ -0.44
CCDC40-214ENST00000575431 BCL2L12Q9HB09 334 aa12.3□□□□□ -0.44
CCDC40-214ENST00000575431 MAP3K15Q6ZN16 1313 aa12.3□□□□□ -0.44
CCDC40-214ENST00000575431 BCORQ6W2J9 1755 aa12.3□□□□□ -0.44
CCDC40-214ENST00000575431 HSP90AB3PQ58FF7 597 aa12.29□□□□□ -0.44
CCDC40-214ENST00000575431 COPS6Q7L5N1 327 aa12.29□□□□□ -0.44
CCDC40-214ENST00000575431 TRMT2AQ8IZ69 625 aaKnown RBP12.29□□□□□ -0.44
CCDC40-214ENST00000575431 ZBED9Q6R2W3 1325 aa12.29□□□□□ -0.44
CCDC40-214ENST00000575431 CACNA1FO60840 1977 aa12.29□□□□□ -0.44
CCDC40-214ENST00000575431 CT47B1P0C2W7 299 aaPredicted RBP12.28□□□□□ -0.44
CCDC40-214ENST00000575431 NFIXQ14938 502 aa12.28□□□□□ -0.44
CCDC40-214ENST00000575431 PROSER3Q2NL68 480 aa12.28□□□□□ -0.44
CCDC40-214ENST00000575431 GIGYF2Q6Y7W6 1299 aaKnown RBP12.28□□□□□ -0.44
CCDC40-214ENST00000575431 SETDB2Q96T68 719 aa12.28□□□□□ -0.44
CCDC40-214ENST00000575431 CD2APQ9Y5K6 639 aa12.28□□□□□ -0.44
CCDC40-214ENST00000575431 DDX58O95786 925 aaKnown RBP12.27□□□□□ -0.45
CCDC40-214ENST00000575431 TTLL7Q6ZT98 887 aa12.27□□□□□ -0.45
CCDC40-214ENST00000575431 ANKRD13DQ6ZTN6 518 aa12.27□□□□□ -0.45
CCDC40-214ENST00000575431 PLBD2Q8NHP8 589 aa12.27□□□□□ -0.45
CCDC40-214ENST00000575431 XAGE3Q8WTP9 111 aa12.27□□□□□ -0.45
CCDC40-214ENST00000575431 CDCA7LQ96GN5 454 aa12.27□□□□□ -0.45
CCDC40-214ENST00000575431 CARMIL3Q8ND23 1372 aa12.27□□□□□ -0.45
CCDC40-214ENST00000575431 POLRMTO00411 1230 aaKnown RBP12.26□□□□□ -0.45
CCDC40-214ENST00000575431 ANXA1P04083 346 aa12.26□□□□□ -0.45
CCDC40-214ENST00000575431 SLC4A2P04920 1241 aa12.26□□□□□ -0.45
CCDC40-214ENST00000575431 SERPINB2P05120 415 aa12.26□□□□□ -0.45
CCDC40-214ENST00000575431 AIMP1Q12904 312 aaKnown RBP12.26□□□□□ -0.45
CCDC40-214ENST00000575431 TBC1D9BQ66K14 1250 aa12.26□□□□□ -0.45
CCDC40-214ENST00000575431 SYT17Q9BSW7 474 aa12.26□□□□□ -0.45
CCDC40-214ENST00000575431 FHDC1Q9C0D6 1143 aaPredicted RBP12.26□□□□□ -0.45
CCDC40-214ENST00000575431 ZBTB3Q9H5J0 574 aa12.26□□□□□ -0.45
CCDC40-214ENST00000575431 ATP10DQ9P241 1426 aa12.26□□□□□ -0.45
CCDC40-214ENST00000575431 NUP98P52948 1817 aa12.25□□□□□ -0.45
CCDC40-214ENST00000575431 DDR1Q08345 913 aa12.25□□□□□ -0.45
CCDC40-214ENST00000575431 PARP10Q53GL7 1025 aa12.25□□□□□ -0.45
CCDC40-214ENST00000575431 TPTE2Q6XPS3 522 aa12.25□□□□□ -0.45
CCDC40-214ENST00000575431 BICDL1Q6ZP65 573 aa12.25□□□□□ -0.45
CCDC40-214ENST00000575431 NIP7Q9Y221 180 aaKnown RBP eCLIP12.25□□□□□ -0.45
CCDC40-214ENST00000575431 TGFB2P61812 414 aa12.24□□□□□ -0.45
CCDC40-214ENST00000575431 HLFQ16534 295 aa12.24□□□□□ -0.45
CCDC40-214ENST00000575431 RIC3Q7Z5B4 369 aa12.24□□□□□ -0.45
CCDC40-214ENST00000575431 ZNF34Q8IZ26 560 aa12.24□□□□□ -0.45
CCDC40-214ENST00000575431 KLHL34Q8N239 644 aa12.24□□□□□ -0.45
CCDC40-214ENST00000575431 NYXQ9GZU5 481 aa12.24□□□□□ -0.45
CCDC40-214ENST00000575431 PHAXQ9H814 394 aaKnown RBP12.24□□□□□ -0.45
CCDC40-214ENST00000575431 NRXN2Q9P2S2 1712 aa12.24□□□□□ -0.45
CCDC40-214ENST00000575431 PDZRN3Q9UPQ7 1066 aa12.24□□□□□ -0.45
CCDC40-214ENST00000575431 C10orf71Q711Q0 1435 aa12.23□□□□□ -0.45
CCDC40-214ENST00000575431 IBTKQ9P2D0 1353 aaPredicted RBP12.23□□□□□ -0.45
CCDC40-214ENST00000575431 RNF123Q5XPI4 1314 aa12.23□□□□□ -0.45
CCDC40-214ENST00000575431 NPHP1O15259 732 aa12.23□□□□□ -0.45
CCDC40-214ENST00000575431 TCIRG1Q13488 830 aa12.23□□□□□ -0.45
CCDC40-214ENST00000575431 ALDH1L2Q3SY69 923 aa12.23□□□□□ -0.45
CCDC40-214ENST00000575431 KSR2Q6VAB6 950 aa12.23□□□□□ -0.45
CCDC40-214ENST00000575431 PPP1R42Q7Z4L9 355 aa12.23□□□□□ -0.45
CCDC40-214ENST00000575431 NBPF5PQ86XG9 351 aaPredicted RBP12.23□□□□□ -0.45
CCDC40-214ENST00000575431 KIF13BQ9NQT8 1826 aa12.23□□□□□ -0.45
CCDC40-214ENST00000575431 ANKRD36CQ5JPF3 1778 aa12.23□□□□□ -0.45
CCDC40-214ENST00000575431 DCAF8L1A6NGE4 600 aa12.22□□□□□ -0.45
CCDC40-214ENST00000575431 GTF2E1P29083 439 aaPredicted RBP12.22□□□□□ -0.45
CCDC40-214ENST00000575431 ST5P78524 1137 aa12.22□□□□□ -0.45
CCDC40-214ENST00000575431 FLIIQ13045 1269 aa12.22□□□□□ -0.45
CCDC40-214ENST00000575431 TRIM28Q13263 835 aaKnown RBP12.22□□□□□ -0.45
CCDC40-214ENST00000575431 CNBD1Q8NA66 436 aa12.22□□□□□ -0.45
CCDC40-214ENST00000575431 AFDNP55196 1824 aaKnown RBP12.22□□□□□ -0.45
CCDC40-214ENST00000575431 TCERG1O14776 1098 aaKnown RBP12.21□□□□□ -0.45
CCDC40-214ENST00000575431 PDE6BP35913 854 aa12.21□□□□□ -0.45
CCDC40-214ENST00000575431 NEXNQ0ZGT2 675 aa12.21□□□□□ -0.45
CCDC40-214ENST00000575431 FKBP5Q13451 457 aaPredicted RBP12.21□□□□□ -0.45
CCDC40-214ENST00000575431 PRR5LQ6MZQ0 368 aa12.21□□□□□ -0.45
CCDC40-214ENST00000575431 BRIP1Q9BX63 1249 aa12.21□□□□□ -0.45
CCDC40-214ENST00000575431 BRPF1P55201 1214 aaPredicted RBP12.2□□□□□ -0.46
CCDC40-214ENST00000575431 ISCA1Q9BUE6 129 aa12.2□□□□□ -0.46
CCDC40-214ENST00000575431 METTL22Q9BUU2 404 aaPredicted RBP12.2□□□□□ -0.46
CCDC40-214ENST00000575431 ARFGEF2Q9Y6D5 1785 aa12.2□□□□□ -0.46
CCDC40-214ENST00000575431 PTPRCP08575 1304 aa12.19□□□□□ -0.46
CCDC40-214ENST00000575431 PI4KAP2A4QPH2 592 aa12.19□□□□□ -0.46
CCDC40-214ENST00000575431 HSP90B1P14625 803 aaKnown RBP12.19□□□□□ -0.46
CCDC40-214ENST00000575431 GPTP24298 496 aa12.19□□□□□ -0.46
CCDC40-214ENST00000575431 SUSD4Q5VX71 490 aa12.19□□□□□ -0.46
CCDC40-214ENST00000575431 G2E3Q7L622 706 aa12.19□□□□□ -0.46
CCDC40-214ENST00000575431 NLRP10Q86W26 655 aa12.19□□□□□ -0.46
CCDC40-214ENST00000575431 PI4KAP1Q8N8J0 262 aa12.19□□□□□ -0.46
CCDC40-214ENST00000575431 CCDC191Q8NCU4 936 aa12.19□□□□□ -0.46
CCDC40-214ENST00000575431 UTP14AQ9BVJ6 771 aaKnown RBP12.19□□□□□ -0.46
CCDC40-214ENST00000575431 MAP3K2Q9Y2U5 619 aa12.19□□□□□ -0.46
CCDC40-214ENST00000575431 UBN2Q6ZU65 1347 aa12.18□□□□□ -0.46
CCDC40-214ENST00000575431 H0YIN7 160 aa12.18□□□□□ -0.46
CCDC40-214ENST00000575431 SLC10A5Q5PT55 438 aa12.18□□□□□ -0.46
CCDC40-214ENST00000575431 MRPL50Q8N5N7 158 aaKnown RBP12.18□□□□□ -0.46
CCDC40-214ENST00000575431 DNAAF4Q8WXU2 420 aa12.18□□□□□ -0.46
CCDC40-214ENST00000575431 SSH1Q8WYL5 1049 aa12.18□□□□□ -0.46
CCDC40-214ENST00000575431 SMC4Q9NTJ3 1288 aa12.18□□□□□ -0.46
CCDC40-214ENST00000575431 RIC1Q4ADV7 1423 aa12.18□□□□□ -0.46
CCDC40-214ENST00000575431 ADCY9O60503 1353 aa12.18□□□□□ -0.46
CCDC40-214ENST00000575431 SH3TC1Q8TE82 1336 aa12.17□□□□□ -0.46
CCDC40-214ENST00000575431 PXDNLA1KZ92 1463 aa12.17□□□□□ -0.46
CCDC40-214ENST00000575431 FAM177BA6PVY3 158 aa12.17□□□□□ -0.46
CCDC40-214ENST00000575431 NTSR2O95665 410 aa12.17□□□□□ -0.46
CCDC40-214ENST00000575431 NLGN2Q8NFZ4 835 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms