RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 SAPCD2Q86UD0 394 aa15.74■□□□□ 0.11
CDH3-208ENST00000569036 NBPF15Q8N660 670 aa15.74■□□□□ 0.11
CDH3-208ENST00000569036 ZNF277Q9NRM2 450 aaPredicted RBP15.74■□□□□ 0.11
CDH3-208ENST00000569036 BCORQ6W2J9 1755 aa15.74■□□□□ 0.11
CDH3-208ENST00000569036 SCN7AQ01118 1682 aa15.73■□□□□ 0.11
CDH3-208ENST00000569036 CYP19A1P11511 503 aaPredicted RBP15.73■□□□□ 0.11
CDH3-208ENST00000569036 CCDC93Q567U6 631 aa15.73■□□□□ 0.11
CDH3-208ENST00000569036 GPC2Q8N158 579 aa15.73■□□□□ 0.11
CDH3-208ENST00000569036 NFATC2IPQ8NCF5 419 aa15.73■□□□□ 0.11
CDH3-208ENST00000569036 ZBTB1Q9Y2K1 713 aa15.73■□□□□ 0.11
CDH3-208ENST00000569036 MKI67P46013 3256 aaKnown RBP15.72■□□□□ 0.11
CDH3-208ENST00000569036 FZD9O00144 591 aa15.72■□□□□ 0.11
CDH3-208ENST00000569036 FKBP4Q02790 459 aaKnown RBP eCLIP15.72■□□□□ 0.11
CDH3-208ENST00000569036 ZNF530Q6P9A1 599 aaPredicted RBP15.72■□□□□ 0.11
CDH3-208ENST00000569036 C7orf43Q8WVR3 580 aa15.72■□□□□ 0.11
CDH3-208ENST00000569036 SRGNP10124 158 aa15.71■□□□□ 0.11
CDH3-208ENST00000569036 TBC1D9BQ66K14 1250 aa15.71■□□□□ 0.11
CDH3-208ENST00000569036 HHIPL1Q96JK4 782 aa15.71■□□□□ 0.11
CDH3-208ENST00000569036 SCN11AQ9UI33 1791 aa15.7■□□□□ 0.1
CDH3-208ENST00000569036 MASTLQ96GX5 879 aa15.7■□□□□ 0.1
CDH3-208ENST00000569036 TESK2Q96S53 571 aa15.7■□□□□ 0.1
CDH3-208ENST00000569036 ST20-MTHFSA0A0A6YYL1 179 aa15.69■□□□□ 0.1
CDH3-208ENST00000569036 MTHFSP49914 203 aa15.69■□□□□ 0.1
CDH3-208ENST00000569036 ZIC5Q96T25 663 aa15.69■□□□□ 0.1
CDH3-208ENST00000569036 CELF2O95319 508 aaKnown RBP15.68■□□□□ 0.1
CDH3-208ENST00000569036 LMOD1P29536 600 aaPredicted RBP15.68■□□□□ 0.1
CDH3-208ENST00000569036 FXR1P51114 621 aaKnown RBP eCLIP15.68■□□□□ 0.1
CDH3-208ENST00000569036 PLEKHO1Q53GL0 409 aaPredicted RBP15.68■□□□□ 0.1
CDH3-208ENST00000569036 IARSP41252 1262 aaKnown RBP15.67■□□□□ 0.1
CDH3-208ENST00000569036 EPS15P42566 896 aa15.67■□□□□ 0.1
CDH3-208ENST00000569036 SCNN1DP51172 638 aa15.67■□□□□ 0.1
CDH3-208ENST00000569036 NOGQ13253 232 aa15.67■□□□□ 0.1
CDH3-208ENST00000569036 EIF4A2Q14240 407 aaKnown RBP15.67■□□□□ 0.1
CDH3-208ENST00000569036 OLFM4Q6UX06 510 aa15.67■□□□□ 0.1
CDH3-208ENST00000569036 COL4A5P29400 1685 aa15.67■□□□□ 0.1
CDH3-208ENST00000569036 USP50Q70EL3 339 aaPredicted RBP15.66■□□□□ 0.1
CDH3-208ENST00000569036 CNBD1Q8NA66 436 aa15.66■□□□□ 0.1
CDH3-208ENST00000569036 GJA3Q9Y6H8 435 aa15.66■□□□□ 0.1
CDH3-208ENST00000569036 CTU1Q7Z7A3 348 aaKnown RBP15.65■□□□□ 0.1
CDH3-208ENST00000569036 SIN3AQ96ST3 1273 aa15.65■□□□□ 0.1
CDH3-208ENST00000569036 SAGE1Q9NXZ1 904 aa15.65■□□□□ 0.1
CDH3-208ENST00000569036 HPS5Q9UPZ3 1129 aa15.65■□□□□ 0.1
CDH3-208ENST00000569036 SZT2Q5T011 3432 aa15.65■□□□□ 0.1
CDH3-208ENST00000569036 CANXP27824 592 aaKnown RBP15.64■□□□□ 0.09
CDH3-208ENST00000569036 AMOTQ4VCS5 1084 aa15.64■□□□□ 0.09
CDH3-208ENST00000569036 C1orf141Q5JVX7 400 aa15.64■□□□□ 0.09
CDH3-208ENST00000569036 RTKN2Q8IZC4 609 aa15.64■□□□□ 0.09
CDH3-208ENST00000569036 AKAP11Q9UKA4 1901 aa15.64■□□□□ 0.09
CDH3-208ENST00000569036 A0A0C4DFX4 3053 aa15.63■□□□□ 0.09
CDH3-208ENST00000569036 DLL1O00548 723 aa15.63■□□□□ 0.09
CDH3-208ENST00000569036 EIF5P55010 431 aaKnown RBP15.63■□□□□ 0.09
CDH3-208ENST00000569036 ST5P78524 1137 aa15.63■□□□□ 0.09
CDH3-208ENST00000569036 NPHP1O15259 732 aa15.62■□□□□ 0.09
CDH3-208ENST00000569036 EIF6P56537 245 aaKnown RBP15.62■□□□□ 0.09
CDH3-208ENST00000569036 SYNE4Q8N205 404 aa15.62■□□□□ 0.09
CDH3-208ENST00000569036 GLIS2Q9BZE0 524 aaPredicted RBP15.62■□□□□ 0.09
CDH3-208ENST00000569036 POLKQ9UBT6 870 aa15.62■□□□□ 0.09
CDH3-208ENST00000569036 SNED1Q8TER0 1413 aa15.61■□□□□ 0.09
CDH3-208ENST00000569036 MRC1P22897 1456 aa15.61■□□□□ 0.09
CDH3-208ENST00000569036 A0A087WZG4 1122 aa15.61■□□□□ 0.09
CDH3-208ENST00000569036 SLC39A6Q13433 755 aa15.61■□□□□ 0.09
CDH3-208ENST00000569036 JDP2Q8WYK2 163 aa15.61■□□□□ 0.09
CDH3-208ENST00000569036 ZNF408Q9H9D4 720 aa15.61■□□□□ 0.09
CDH3-208ENST00000569036 UBR2Q8IWV8 1755 aa15.61■□□□□ 0.09
CDH3-208ENST00000569036 CUL9Q8IWT3 2517 aa15.61■□□□□ 0.09
CDH3-208ENST00000569036 NPR1P16066 1061 aa15.6■□□□□ 0.09
CDH3-208ENST00000569036 AKAP4Q5JQC9 854 aa15.6■□□□□ 0.09
CDH3-208ENST00000569036 RNF186Q9NXI6 227 aa15.6■□□□□ 0.09
CDH3-208ENST00000569036 TRPA1O75762 1119 aa15.59■□□□□ 0.09
CDH3-208ENST00000569036 NEUROD1Q13562 356 aa15.59■□□□□ 0.09
CDH3-208ENST00000569036 SETDB2Q96T68 719 aa15.59■□□□□ 0.09
CDH3-208ENST00000569036 SLC52A2Q9HAB3 445 aa15.59■□□□□ 0.09
CDH3-208ENST00000569036 FAM155AB1AL88 458 aaPredicted RBP15.58■□□□□ 0.08
CDH3-208ENST00000569036 VSIG10Q8N0Z9 540 aa15.58■□□□□ 0.08
CDH3-208ENST00000569036 PSMD1Q99460 953 aa15.58■□□□□ 0.08
CDH3-208ENST00000569036 CARD14Q9BXL6 1004 aa15.58■□□□□ 0.08
CDH3-208ENST00000569036 TBC1D2BQ9UPU7 963 aa15.58■□□□□ 0.08
CDH3-208ENST00000569036 HUNKP57058 714 aa15.57■□□□□ 0.08
CDH3-208ENST00000569036 ADARB2Q9NS39 739 aaKnown RBP15.57■□□□□ 0.08
CDH3-208ENST00000569036 SLC24A1O60721 1099 aa15.56■□□□□ 0.08
CDH3-208ENST00000569036 AEBP1Q8IUX7 1158 aa15.56■□□□□ 0.08
CDH3-208ENST00000569036 KLRG2A4D1S0 409 aaPredicted RBP15.55■□□□□ 0.08
CDH3-208ENST00000569036 KIF23Q02241 960 aaPredicted RBP15.55■□□□□ 0.08
CDH3-208ENST00000569036 GPRC5DQ9NZD1 345 aa15.55■□□□□ 0.08
CDH3-208ENST00000569036 PGAP2Q9UHJ9 254 aa15.55■□□□□ 0.08
CDH3-208ENST00000569036 ZNF330Q9Y3S2 320 aaPredicted RBP15.55■□□□□ 0.08
CDH3-208ENST00000569036 HTTP42858 3142 aa15.55■□□□□ 0.08
CDH3-208ENST00000569036 CAMTA2O94983 1202 aa15.54■□□□□ 0.08
CDH3-208ENST00000569036 STARD3NLO95772 234 aa15.54■□□□□ 0.08
CDH3-208ENST00000569036 PKN2Q16513 984 aaKnown RBP15.54■□□□□ 0.08
CDH3-208ENST00000569036 TRIOBPQ9H2D6 2365 aa15.54■□□□□ 0.08
CDH3-208ENST00000569036 RGMBQ6NW40 437 aa15.53■□□□□ 0.08
CDH3-208ENST00000569036 LGR6Q9HBX8 967 aa15.53■□□□□ 0.08
CDH3-208ENST00000569036 COL6A3P12111 3177 aa15.53■□□□□ 0.08
CDH3-208ENST00000569036 NBPF5PQ86XG9 351 aaPredicted RBP15.52■□□□□ 0.08
CDH3-208ENST00000569036 LARGE2Q8N3Y3 721 aa15.52■□□□□ 0.08
CDH3-208ENST00000569036 CENPFP49454 3210 aa15.52■□□□□ 0.07
CDH3-208ENST00000569036 BRCA2P51587 3418 aa15.51■□□□□ 0.07
CDH3-208ENST00000569036 CDC37L1Q7L3B6 337 aa15.51■□□□□ 0.07
CDH3-208ENST00000569036 IL6STP40189 918 aaPredicted RBP15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms