RNA–Protein interactions for RNA: ENST00000568782.1

UBR1-207, Transcript of ubiquitin protein ligase E3 component n-recognin 1, human

TSL 3

Gene UBR1, Length 615 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR1-207	ENST00000568782	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.5	□□□□□ -0.25
UBR1-207	ENST00000568782	KIAA1551	Q9HCM1	1747 aa		13.5	□□□□□ -0.25
UBR1-207	ENST00000568782	NUP98	P52948	1817 aa		13.49	□□□□□ -0.25
UBR1-207	ENST00000568782	NBPF26	B4DH59	902 aa		13.49	□□□□□ -0.25
UBR1-207	ENST00000568782	ERVV-1	B6SEH8	477 aa		13.49	□□□□□ -0.25
UBR1-207	ENST00000568782	APAF1	O14727	1248 aa		13.49	□□□□□ -0.25
UBR1-207	ENST00000568782	KCNA3	P22001	575 aa		13.49	□□□□□ -0.25
UBR1-207	ENST00000568782	NBPF10	Q6P3W6	841 aa	Known RBP	13.49	□□□□□ -0.25
UBR1-207	ENST00000568782	NBPF15	Q8N660	670 aa		13.49	□□□□□ -0.25
UBR1-207	ENST00000568782	ZNF622	Q969S3	477 aa	Known RBP eCLIP	13.49	□□□□□ -0.25	5e-6	■■■■□ 22.9
UBR1-207	ENST00000568782	CHMP4A	Q9BY43	222 aa		13.49	□□□□□ -0.25
UBR1-207	ENST00000568782	NYX	Q9GZU5	481 aa		13.49	□□□□□ -0.25
UBR1-207	ENST00000568782	MRS2	Q9HD23	443 aa		13.49	□□□□□ -0.25
UBR1-207	ENST00000568782	GNAI1	P63096	354 aa		13.48	□□□□□ -0.25
UBR1-207	ENST00000568782	PRR5L	Q6MZQ0	368 aa		13.48	□□□□□ -0.25
UBR1-207	ENST00000568782	CFAP44	Q96MT7	982 aa		13.48	□□□□□ -0.25
UBR1-207	ENST00000568782	GPBP1L1	Q9HC44	474 aa	Predicted RBP	13.48	□□□□□ -0.25
UBR1-207	ENST00000568782	TRIM35	Q9UPQ4	493 aa		13.48	□□□□□ -0.25
UBR1-207	ENST00000568782	UTRN	P46939	3433 aa		13.48	□□□□□ -0.25
UBR1-207	ENST00000568782	MAP3K15	Q6ZN16	1313 aa		13.47	□□□□□ -0.25
UBR1-207	ENST00000568782	CHL1	O00533	1208 aa		13.47	□□□□□ -0.25
UBR1-207	ENST00000568782	CNKSR1	Q969H4	720 aa		13.47	□□□□□ -0.25
UBR1-207	ENST00000568782	DLEC1	Q9Y238	1755 aa		13.46	□□□□□ -0.25
UBR1-207	ENST00000568782	FAM177B	A6PVY3	158 aa		13.46	□□□□□ -0.25
UBR1-207	ENST00000568782	HOXB7	P09629	217 aa		13.45	□□□□□ -0.26
UBR1-207	ENST00000568782	PPP1R42	Q7Z4L9	355 aa		13.45	□□□□□ -0.26
UBR1-207	ENST00000568782	ZNF526	Q8TF50	670 aa	Predicted RBP	13.45	□□□□□ -0.26
UBR1-207	ENST00000568782	NECTIN2	Q92692	538 aa		13.45	□□□□□ -0.26
UBR1-207	ENST00000568782	MASTL	Q96GX5	879 aa		13.45	□□□□□ -0.26
UBR1-207	ENST00000568782	ZBTB3	Q9H5J0	574 aa		13.45	□□□□□ -0.26
UBR1-207	ENST00000568782	CACNA1S	Q13698	1873 aa		13.44	□□□□□ -0.26
UBR1-207	ENST00000568782	HLF	Q16534	295 aa		13.44	□□□□□ -0.26
UBR1-207	ENST00000568782	HSP90AB3P	Q58FF7	597 aa		13.44	□□□□□ -0.26
UBR1-207	ENST00000568782	SOGA3	Q5TF21	947 aa		13.44	□□□□□ -0.26
UBR1-207	ENST00000568782	HDGFL1	Q5TGJ6	251 aa		13.44	□□□□□ -0.26
UBR1-207	ENST00000568782	CCDC24	Q8N4L8	307 aa		13.44	□□□□□ -0.26
UBR1-207	ENST00000568782	IFT57	Q9NWB7	429 aa		13.44	□□□□□ -0.26
UBR1-207	ENST00000568782	DBF4	Q9UBU7	674 aa	Predicted RBP	13.44	□□□□□ -0.26
UBR1-207	ENST00000568782	ATP10D	Q9P241	1426 aa		13.44	□□□□□ -0.26
UBR1-207	ENST00000568782	CCDC88A	Q3V6T2	1871 aa		13.44	□□□□□ -0.26
UBR1-207	ENST00000568782	ANKRD31	Q8N7Z5	1873 aa		13.44	□□□□□ -0.26
UBR1-207	ENST00000568782	ALDH1B1	P30837	517 aa		13.43	□□□□□ -0.26
UBR1-207	ENST00000568782	AIMP1	Q12904	312 aa	Known RBP	13.43	□□□□□ -0.26
UBR1-207	ENST00000568782	C9orf131	Q5VYM1	1079 aa		13.43	□□□□□ -0.26
UBR1-207	ENST00000568782	STYK1	Q6J9G0	422 aa		13.43	□□□□□ -0.26
UBR1-207	ENST00000568782	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.43	□□□□□ -0.26
UBR1-207	ENST00000568782	TTLL7	Q6ZT98	887 aa		13.43	□□□□□ -0.26
UBR1-207	ENST00000568782	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.43	□□□□□ -0.26
UBR1-207	ENST00000568782	SBF1	O95248	1867 aa		13.42	□□□□□ -0.26
UBR1-207	ENST00000568782	NPR1	P16066	1061 aa		13.42	□□□□□ -0.26
UBR1-207	ENST00000568782	GPT	P24298	496 aa		13.42	□□□□□ -0.26
UBR1-207	ENST00000568782	PARP10	Q53GL7	1025 aa		13.42	□□□□□ -0.26
UBR1-207	ENST00000568782	DUSP27	Q5VZP5	1158 aa		13.42	□□□□□ -0.26
UBR1-207	ENST00000568782	COPS6	Q7L5N1	327 aa		13.42	□□□□□ -0.26
UBR1-207	ENST00000568782	MBIP	Q9NS73	344 aa		13.42	□□□□□ -0.26
UBR1-207	ENST00000568782	RNF181	Q9P0P0	153 aa		13.42	□□□□□ -0.26
UBR1-207	ENST00000568782	SRGN	P10124	158 aa		13.41	□□□□□ -0.26
UBR1-207	ENST00000568782	LMNB1	P20700	586 aa		13.41	□□□□□ -0.26
UBR1-207	ENST00000568782	RPGR	Q92834	1020 aa	Known RBP	13.41	□□□□□ -0.26
UBR1-207	ENST00000568782	TMX4	Q9H1E5	349 aa	Predicted RBP	13.41	□□□□□ -0.26
UBR1-207	ENST00000568782	HYPK	Q9NX55	129 aa		13.41	□□□□□ -0.26
UBR1-207	ENST00000568782	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.41	□□□□□ -0.26
UBR1-207	ENST00000568782	KDM2B	Q8NHM5	1336 aa		13.4	□□□□□ -0.26
UBR1-207	ENST00000568782	C21orf2	O43822	256 aa		13.4	□□□□□ -0.26
UBR1-207	ENST00000568782	C1QTNF8	P60827	252 aa		13.4	□□□□□ -0.26
UBR1-207	ENST00000568782	CCDC27	Q2M243	656 aa		13.4	□□□□□ -0.26
UBR1-207	ENST00000568782	CCDC184	Q52MB2	194 aa		13.4	□□□□□ -0.26
UBR1-207	ENST00000568782	XAGE3	Q8WTP9	111 aa		13.4	□□□□□ -0.26
UBR1-207	ENST00000568782	ANXA1	P04083	346 aa		13.39	□□□□□ -0.27
UBR1-207	ENST00000568782	PDIA6	Q15084	440 aa		13.39	□□□□□ -0.27
UBR1-207	ENST00000568782	KRT24	Q2M2I5	525 aa		13.39	□□□□□ -0.27
UBR1-207	ENST00000568782	PRPF40B	Q6NWY9	871 aa	Known RBP	13.39	□□□□□ -0.27
UBR1-207	ENST00000568782	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.39	□□□□□ -0.27
UBR1-207	ENST00000568782	FAM9B	Q8IZU0	186 aa		13.39	□□□□□ -0.27
UBR1-207	ENST00000568782	NLRP3	Q96P20	1036 aa		13.39	□□□□□ -0.27
UBR1-207	ENST00000568782	UTP14A	Q9BVJ6	771 aa	Known RBP	13.39	□□□□□ -0.27
UBR1-207	ENST00000568782	CHPF2	Q9P2E5	772 aa		13.39	□□□□□ -0.27
UBR1-207	ENST00000568782	ADCY9	O60503	1353 aa		13.39	□□□□□ -0.27
UBR1-207	ENST00000568782	ANKRD36C	Q5JPF3	1778 aa		13.38	□□□□□ -0.27
UBR1-207	ENST00000568782	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.38	□□□□□ -0.27
UBR1-207	ENST00000568782	ELL2	O00472	640 aa	Predicted RBP	13.38	□□□□□ -0.27
UBR1-207	ENST00000568782	ZNF853	P0CG23	659 aa		13.38	□□□□□ -0.27
UBR1-207	ENST00000568782	NCBP3	Q53F19	620 aa	Known RBP	13.38	□□□□□ -0.27
UBR1-207	ENST00000568782	CCDC30	Q5VVM6	783 aa		13.38	□□□□□ -0.27
UBR1-207	ENST00000568782	DPY19L2	Q6NUT2	758 aa		13.38	□□□□□ -0.27
UBR1-207	ENST00000568782	ANKRD13D	Q6ZTN6	518 aa		13.38	□□□□□ -0.27
UBR1-207	ENST00000568782	NUTM1	Q86Y26	1132 aa		13.38	□□□□□ -0.27
UBR1-207	ENST00000568782	ZNF34	Q8IZ26	560 aa		13.38	□□□□□ -0.27
UBR1-207	ENST00000568782	RNF123	Q5XPI4	1314 aa		13.38	□□□□□ -0.27
UBR1-207	ENST00000568782	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.38	□□□□□ -0.27
UBR1-207	ENST00000568782	ARFGEF2	Q9Y6D5	1785 aa		13.37	□□□□□ -0.27
UBR1-207	ENST00000568782	SLX4	Q8IY92	1834 aa		13.37	□□□□□ -0.27
UBR1-207	ENST00000568782	COL11A2	P13942	1736 aa	Predicted RBP	13.37	□□□□□ -0.27
UBR1-207	ENST00000568782	DDX58	O95786	925 aa	Known RBP	13.37	□□□□□ -0.27
UBR1-207	ENST00000568782	GOLGA2	Q08379	1002 aa		13.37	□□□□□ -0.27
UBR1-207	ENST00000568782	TCIRG1	Q13488	830 aa		13.37	□□□□□ -0.27
UBR1-207	ENST00000568782	PROSER3	Q2NL68	480 aa		13.37	□□□□□ -0.27
UBR1-207	ENST00000568782	ERFE	Q4G0M1	354 aa		13.37	□□□□□ -0.27
UBR1-207	ENST00000568782	CCDC93	Q567U6	631 aa		13.37	□□□□□ -0.27
UBR1-207	ENST00000568782	SUSD4	Q5VX71	490 aa		13.37	□□□□□ -0.27

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