RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 TNRC18O15417 2968 aaPredicted RBP16.19■□□□□ 0.18
CLK3-222ENST00000568232 PRPF40BQ6NWY9 871 aaKnown RBP16.19■□□□□ 0.18
CLK3-222ENST00000568232 CNTROBQ8N137 903 aa16.19■□□□□ 0.18
CLK3-222ENST00000568232 ZNF541Q9H0D2 1346 aa16.19■□□□□ 0.18
CLK3-222ENST00000568232 EIF5P55010 431 aaKnown RBP16.18■□□□□ 0.18
CLK3-222ENST00000568232 ABT1Q9ULW3 272 aaKnown RBP16.18■□□□□ 0.18
CLK3-222ENST00000568232 PDZRN3Q9UPQ7 1066 aa16.18■□□□□ 0.18
CLK3-222ENST00000568232 EPHX2P34913 555 aa16.17■□□□□ 0.18
CLK3-222ENST00000568232 AKAP4Q5JQC9 854 aa16.17■□□□□ 0.18
CLK3-222ENST00000568232 CNKSR1Q969H4 720 aa16.17■□□□□ 0.18
CLK3-222ENST00000568232 HACL1Q9UJ83 578 aa16.17■□□□□ 0.18
CLK3-222ENST00000568232 TSKSQ9UJT2 592 aa16.17■□□□□ 0.18
CLK3-222ENST00000568232 TBC1D2BQ9UPU7 963 aa16.17■□□□□ 0.18
CLK3-222ENST00000568232 SLX4Q8IY92 1834 aa16.17■□□□□ 0.18
CLK3-222ENST00000568232 SCN11AQ9UI33 1791 aa16.16■□□□□ 0.18
CLK3-222ENST00000568232 RNMTO43148 476 aaKnown RBP16.16■□□□□ 0.18
CLK3-222ENST00000568232 SRGNP10124 158 aa16.16■□□□□ 0.18
CLK3-222ENST00000568232 FMR1Q06787 632 aaKnown RBP eCLIP16.16■□□□□ 0.18
CLK3-222ENST00000568232 GRM1Q13255 1194 aa16.16■□□□□ 0.18
CLK3-222ENST00000568232 CFAP44Q96MT7 982 aa16.16■□□□□ 0.18
CLK3-222ENST00000568232 SCN4AP35499 1836 aa16.15■□□□□ 0.18
CLK3-222ENST00000568232 STYK1Q6J9G0 422 aa16.15■□□□□ 0.18
CLK3-222ENST00000568232 POLR3GLQ9BT43 218 aa16.15■□□□□ 0.18
CLK3-222ENST00000568232 ZNF277Q9NRM2 450 aaPredicted RBP16.15■□□□□ 0.18
CLK3-222ENST00000568232 ZNF330Q9Y3S2 320 aaPredicted RBP16.15■□□□□ 0.18
CLK3-222ENST00000568232 RNF123Q5XPI4 1314 aa16.15■□□□□ 0.18
CLK3-222ENST00000568232 ADAMTSL1Q8N6G6 1762 aa16.14■□□□□ 0.17
CLK3-222ENST00000568232 OLFM4Q6UX06 510 aa16.14■□□□□ 0.17
CLK3-222ENST00000568232 PAXIP1Q6ZW49 1069 aaPredicted RBP16.14■□□□□ 0.17
CLK3-222ENST00000568232 VSIG10Q8N0Z9 540 aa16.14■□□□□ 0.17
CLK3-222ENST00000568232 C7orf43Q8WVR3 580 aa16.14■□□□□ 0.17
CLK3-222ENST00000568232 MASTLQ96GX5 879 aa16.14■□□□□ 0.17
CLK3-222ENST00000568232 A0A087WZG4 1122 aa16.13■□□□□ 0.17
CLK3-222ENST00000568232 NPHP1O15259 732 aa16.13■□□□□ 0.17
CLK3-222ENST00000568232 SOGA3Q5TF21 947 aa16.13■□□□□ 0.17
CLK3-222ENST00000568232 CYP4F22Q6NT55 531 aa16.13■□□□□ 0.17
CLK3-222ENST00000568232 PNMA8AQ86V59 439 aaPredicted RBP16.13■□□□□ 0.17
CLK3-222ENST00000568232 CNBD1Q8NA66 436 aa16.13■□□□□ 0.17
CLK3-222ENST00000568232 CAPNS2Q96L46 248 aa16.13■□□□□ 0.17
CLK3-222ENST00000568232 DDX21Q9NR30 783 aaKnown RBP eCLIP16.13■□□□□ 0.17
CLK3-222ENST00000568232 STARD3NLO95772 234 aa16.12■□□□□ 0.17
CLK3-222ENST00000568232 ATXN8OSP0DMR3 200 aa16.12■□□□□ 0.17
CLK3-222ENST00000568232 IL13P35225 146 aa16.12■□□□□ 0.17
CLK3-222ENST00000568232 GPR101Q96P66 508 aaPredicted RBP16.12■□□□□ 0.17
CLK3-222ENST00000568232 SETDB2Q96T68 719 aa16.12■□□□□ 0.17
CLK3-222ENST00000568232 BEGAINQ9BUH8 593 aa16.12■□□□□ 0.17
CLK3-222ENST00000568232 MRC1P22897 1456 aa16.11■□□□□ 0.17
CLK3-222ENST00000568232 FKBP4Q02790 459 aaKnown RBP eCLIP16.11■□□□□ 0.17
CLK3-222ENST00000568232 CCDC93Q567U6 631 aa16.11■□□□□ 0.17
CLK3-222ENST00000568232 CACNA1SQ13698 1873 aa16.1■□□□□ 0.17
CLK3-222ENST00000568232 AOC2O75106 756 aa16.1■□□□□ 0.17
CLK3-222ENST00000568232 ST5P78524 1137 aa16.1■□□□□ 0.17
CLK3-222ENST00000568232 MCOLN1Q9GZU1 580 aa16.1■□□□□ 0.17
CLK3-222ENST00000568232 FZD9O00144 591 aa16.08■□□□□ 0.16
CLK3-222ENST00000568232 CAMTA2O94983 1202 aa16.08■□□□□ 0.16
CLK3-222ENST00000568232 HMOX1P09601 288 aa16.08■□□□□ 0.16
CLK3-222ENST00000568232 ECE1P42892 770 aa16.08■□□□□ 0.16
CLK3-222ENST00000568232 MTHFSDQ2M296 383 aaKnown RBP16.08■□□□□ 0.16
CLK3-222ENST00000568232 CST9Q5W186 159 aa16.08■□□□□ 0.16
CLK3-222ENST00000568232 ZNF496Q96IT1 587 aaPredicted RBP16.08■□□□□ 0.16
CLK3-222ENST00000568232 SCN7AQ01118 1682 aa16.08■□□□□ 0.16
CLK3-222ENST00000568232 TRAF5O00463 557 aa16.07■□□□□ 0.16
CLK3-222ENST00000568232 A1BGP04217 495 aa16.07■□□□□ 0.16
CLK3-222ENST00000568232 MORC1Q86VD1 984 aa16.07■□□□□ 0.16
CLK3-222ENST00000568232 TTC5Q8N0Z6 440 aa16.07■□□□□ 0.16
CLK3-222ENST00000568232 GPC2Q8N158 579 aa16.07■□□□□ 0.16
CLK3-222ENST00000568232 THSD7BQ9C0I4 1608 aa16.07■□□□□ 0.16
CLK3-222ENST00000568232 IL6STP40189 918 aaPredicted RBP16.06■□□□□ 0.16
CLK3-222ENST00000568232 IARSP41252 1262 aaKnown RBP16.06■□□□□ 0.16
CLK3-222ENST00000568232 POTEHQ6S545 545 aa16.06■□□□□ 0.16
CLK3-222ENST00000568232 SYNE4Q8N205 404 aa16.06■□□□□ 0.16
CLK3-222ENST00000568232 PANK3Q9H999 370 aa16.06■□□□□ 0.16
CLK3-222ENST00000568232 GJA3Q9Y6H8 435 aa16.06■□□□□ 0.16
CLK3-222ENST00000568232 ARFGEF2Q9Y6D5 1785 aa16.05■□□□□ 0.16
CLK3-222ENST00000568232 NPR1P16066 1061 aa16.05■□□□□ 0.16
CLK3-222ENST00000568232 NBPF5PQ86XG9 351 aaPredicted RBP16.05■□□□□ 0.16
CLK3-222ENST00000568232 UBR2Q8IWV8 1755 aa16.05■□□□□ 0.16
CLK3-222ENST00000568232 HEG1Q9ULI3 1381 aa16.04■□□□□ 0.16
CLK3-222ENST00000568232 EPS15P42566 896 aa16.04■□□□□ 0.16
CLK3-222ENST00000568232 PIP4K2AP48426 406 aaPredicted RBP16.04■□□□□ 0.16
CLK3-222ENST00000568232 DGKZQ13574 1117 aa16.04■□□□□ 0.16
CLK3-222ENST00000568232 RTKN2Q8IZC4 609 aa16.04■□□□□ 0.16
CLK3-222ENST00000568232 TLL2Q9Y6L7 1015 aa16.04■□□□□ 0.16
CLK3-222ENST00000568232 LTBP1Q14766 1721 aa16.04■□□□□ 0.16
CLK3-222ENST00000568232 ZNF790Q6PG37 636 aa16.03■□□□□ 0.16
CLK3-222ENST00000568232 DZIP3Q86Y13 1208 aaKnown RBP16.03■□□□□ 0.16
CLK3-222ENST00000568232 KLRG2A4D1S0 409 aaPredicted RBP16.02■□□□□ 0.16
CLK3-222ENST00000568232 MAP2K2P36507 400 aa16.02■□□□□ 0.16
CLK3-222ENST00000568232 SCNN1DP51172 638 aa16.02■□□□□ 0.16
CLK3-222ENST00000568232 NPM2Q86SE8 214 aaKnown RBP16.02■□□□□ 0.16
CLK3-222ENST00000568232 JDP2Q8WYK2 163 aa16.02■□□□□ 0.16
CLK3-222ENST00000568232 TEX13AQ9BXU3 409 aaPredicted RBP16.02■□□□□ 0.16
CLK3-222ENST00000568232 COL4A5P29400 1685 aa16.02■□□□□ 0.15
CLK3-222ENST00000568232 FAM177BA6PVY3 158 aa16.01■□□□□ 0.15
CLK3-222ENST00000568232 LMOD1P29536 600 aaPredicted RBP16.01■□□□□ 0.15
CLK3-222ENST00000568232 EIF6P56537 245 aaKnown RBP16■□□□□ 0.15
CLK3-222ENST00000568232 IL17REQ8NFR9 667 aa16■□□□□ 0.15
CLK3-222ENST00000568232 KCNQ3O43525 872 aa15.99■□□□□ 0.15
CLK3-222ENST00000568232 SAPCD2Q86UD0 394 aa15.99■□□□□ 0.15
CLK3-222ENST00000568232 CA12O43570 354 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms