RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ZNF777Q9ULD5 760 aaPredicted RBP6.11□□□□□ -1.43
VPS35-207ENST00000568191 KIAA1024Q9UPX6 916 aa6.11□□□□□ -1.43
VPS35-207ENST00000568191 USP3Q9Y6I4 520 aa6.11□□□□□ -1.43
VPS35-207ENST00000568191 ATAD2Q6PL18 1390 aa6.1□□□□□ -1.43
VPS35-207ENST00000568191 EML1O00423 815 aa6.1□□□□□ -1.43
VPS35-207ENST00000568191 RFX1P22670 979 aa6.1□□□□□ -1.43
VPS35-207ENST00000568191 HIRAP54198 1017 aaPredicted RBP6.1□□□□□ -1.43
VPS35-207ENST00000568191 STAG2Q8N3U4 1231 aa6.1□□□□□ -1.43
VPS35-207ENST00000568191 TSEN2Q8NCE0 465 aaKnown RBP6.1□□□□□ -1.43
VPS35-207ENST00000568191 ZDHHC1Q8WTX9 485 aa6.1□□□□□ -1.43
VPS35-207ENST00000568191 CHMP7Q8WUX9 453 aaPredicted RBP6.1□□□□□ -1.43
VPS35-207ENST00000568191 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.1□□□□□ -1.43
VPS35-207ENST00000568191 FAM196BA6NMK8 535 aa6.09□□□□□ -1.43
VPS35-207ENST00000568191 NEURL1BA8MQ27 555 aa6.09□□□□□ -1.43
VPS35-207ENST00000568191 CD33P20138 364 aa6.09□□□□□ -1.43
VPS35-207ENST00000568191 ALAS2P22557 587 aa6.09□□□□□ -1.43
VPS35-207ENST00000568191 ALYREFQ86V81 257 aaKnown RBP6.09□□□□□ -1.43
VPS35-207ENST00000568191 ANKMY2Q8IV38 441 aa6.09□□□□□ -1.43
VPS35-207ENST00000568191 SCG3Q8WXD2 468 aaKnown RBP6.09□□□□□ -1.43
VPS35-207ENST00000568191 VTI1AQ96AJ9 217 aa6.09□□□□□ -1.43
VPS35-207ENST00000568191 HCN4Q9Y3Q4 1203 aa6.09□□□□□ -1.43
VPS35-207ENST00000568191 CNTNAP5Q8WYK1 1306 aa6.08□□□□□ -1.44
VPS35-207ENST00000568191 C2CD2LO14523 706 aa6.08□□□□□ -1.44
VPS35-207ENST00000568191 IGHA1P01876 353 aa6.08□□□□□ -1.44
VPS35-207ENST00000568191 DPYDQ12882 1025 aa6.08□□□□□ -1.44
VPS35-207ENST00000568191 KCTD17Q8N5Z5 321 aa6.08□□□□□ -1.44
VPS35-207ENST00000568191 CEP63Q96MT8 703 aa6.08□□□□□ -1.44
VPS35-207ENST00000568191 PHACTR1Q9C0D0 580 aa6.08□□□□□ -1.44
VPS35-207ENST00000568191 USP17L15C9J2P7 530 aa6.07□□□□□ -1.44
VPS35-207ENST00000568191 USP17L10C9JJH3 530 aa6.07□□□□□ -1.44
VPS35-207ENST00000568191 USP17L13C9JLJ4 530 aa6.07□□□□□ -1.44
VPS35-207ENST00000568191 USP17L12C9JPN9 530 aa6.07□□□□□ -1.44
VPS35-207ENST00000568191 USP17L11C9JVI0 530 aa6.07□□□□□ -1.44
VPS35-207ENST00000568191 USP17L21D6R901 530 aa6.07□□□□□ -1.44
VPS35-207ENST00000568191 USP17L18D6R9N7 530 aa6.07□□□□□ -1.44
VPS35-207ENST00000568191 USP17L22D6RA61 530 aa6.07□□□□□ -1.44
VPS35-207ENST00000568191 USP17L17D6RBQ6 530 aa6.07□□□□□ -1.44
VPS35-207ENST00000568191 USP17L19D6RCP7 530 aa6.07□□□□□ -1.44
VPS35-207ENST00000568191 USP17L20D6RJB6 530 aa6.07□□□□□ -1.44
VPS35-207ENST00000568191 EPXP11678 715 aa6.07□□□□□ -1.44
VPS35-207ENST00000568191 USP17L24Q0WX57 530 aa6.07□□□□□ -1.44
VPS35-207ENST00000568191 PTK7Q13308 1070 aa6.07□□□□□ -1.44
VPS35-207ENST00000568191 KANK4Q5T7N3 995 aaPredicted RBP6.07□□□□□ -1.44
VPS35-207ENST00000568191 FAM200AQ8TCP9 573 aa6.07□□□□□ -1.44
VPS35-207ENST00000568191 EFSO43281 561 aa6.06□□□□□ -1.44
VPS35-207ENST00000568191 ZNF468Q5VIY5 522 aaPredicted RBP6.06□□□□□ -1.44
VPS35-207ENST00000568191 ALDH16A1Q8IZ83 802 aa6.06□□□□□ -1.44
VPS35-207ENST00000568191 NGLY1Q96IV0 654 aa6.06□□□□□ -1.44
VPS35-207ENST00000568191 BTBD6Q96KE9 485 aa6.06□□□□□ -1.44
VPS35-207ENST00000568191 NOP53Q9NZM5 478 aaKnown RBP6.06□□□□□ -1.44
VPS35-207ENST00000568191 SHISA8B8ZZ34 492 aa6.05□□□□□ -1.44
VPS35-207ENST00000568191 GNB5O14775 395 aa6.05□□□□□ -1.44
VPS35-207ENST00000568191 IGFBP4P22692 258 aa6.05□□□□□ -1.44
VPS35-207ENST00000568191 PCBP4P57723 403 aaKnown RBP6.05□□□□□ -1.44
VPS35-207ENST00000568191 CRTC2Q53ET0 693 aaPredicted RBP6.05□□□□□ -1.44
VPS35-207ENST00000568191 SUSD3Q96L08 255 aa6.05□□□□□ -1.44
VPS35-207ENST00000568191 C2orf49Q9BVC5 232 aaPredicted RBP6.05□□□□□ -1.44
VPS35-207ENST00000568191 ZMYND15Q9H091 742 aa6.05□□□□□ -1.44
VPS35-207ENST00000568191 BRD7Q9NPI1 651 aa6.05□□□□□ -1.44
VPS35-207ENST00000568191 SPDYE3A6NKU9 549 aa6.04□□□□□ -1.44
VPS35-207ENST00000568191 DKK1O94907 266 aa6.04□□□□□ -1.44
VPS35-207ENST00000568191 EPB42P16452 691 aa6.04□□□□□ -1.44
VPS35-207ENST00000568191 GSK3AP49840 483 aa6.04□□□□□ -1.44
VPS35-207ENST00000568191 RTN1Q16799 776 aa6.04□□□□□ -1.44
VPS35-207ENST00000568191 SH3PXD2AQ5TCZ1 1133 aa6.04□□□□□ -1.44
VPS35-207ENST00000568191 GPAT2Q6NUI2 795 aa6.04□□□□□ -1.44
VPS35-207ENST00000568191 POTEAQ6S8J7 498 aa6.04□□□□□ -1.44
VPS35-207ENST00000568191 SYT9Q86SS6 491 aa6.04□□□□□ -1.44
VPS35-207ENST00000568191 EFCC1Q9HA90 598 aa6.04□□□□□ -1.44
VPS35-207ENST00000568191 KCNH4Q9UQ05 1017 aa6.04□□□□□ -1.44
VPS35-207ENST00000568191 ELOA3CA0A087WX78 387 aaPredicted RBP6.03□□□□□ -1.44
VPS35-207ENST00000568191 ELOA3DA6NLF2 546 aaPredicted RBP6.03□□□□□ -1.44
VPS35-207ENST00000568191 FOXO3O43524 673 aa6.03□□□□□ -1.44
VPS35-207ENST00000568191 C21orf2O43822 256 aa6.03□□□□□ -1.44
VPS35-207ENST00000568191 SIN3BO75182 1162 aa6.03□□□□□ -1.44
VPS35-207ENST00000568191 SPEM2Q0P670 501 aa6.03□□□□□ -1.44
VPS35-207ENST00000568191 ELOA3BQ3SY89 546 aa6.03□□□□□ -1.44
VPS35-207ENST00000568191 C1orf229Q6ZS94 237 aaPredicted RBP6.03□□□□□ -1.44
VPS35-207ENST00000568191 CHSY3Q70JA7 882 aa6.03□□□□□ -1.44
VPS35-207ENST00000568191 ELOA3Q8NG57 546 aa6.03□□□□□ -1.44
VPS35-207ENST00000568191 CCDC97Q96F63 343 aaPredicted RBP6.03□□□□□ -1.44
VPS35-207ENST00000568191 DCAF5Q96JK2 942 aa6.03□□□□□ -1.44
VPS35-207ENST00000568191 KCNQ4P56696 695 aa6.02□□□□□ -1.45
VPS35-207ENST00000568191 SNRPNP63162 240 aaKnown RBP6.02□□□□□ -1.45
VPS35-207ENST00000568191 SFSWAPQ12872 951 aaKnown RBP6.02□□□□□ -1.45
VPS35-207ENST00000568191 CFAP70Q5T0N1 1121 aa6.02□□□□□ -1.45
VPS35-207ENST00000568191 C7orf43Q8WVR3 580 aa6.02□□□□□ -1.45
VPS35-207ENST00000568191 HSH2DQ96JZ2 352 aa6.02□□□□□ -1.45
VPS35-207ENST00000568191 PNMA5Q96PV4 448 aa6.02□□□□□ -1.45
VPS35-207ENST00000568191 STRN4Q9NRL3 753 aa6.02□□□□□ -1.45
VPS35-207ENST00000568191 MSTNO14793 375 aa6.01□□□□□ -1.45
VPS35-207ENST00000568191 CDCA8Q53HL2 280 aa6.01□□□□□ -1.45
VPS35-207ENST00000568191 IER5Q5VY09 327 aa6.01□□□□□ -1.45
VPS35-207ENST00000568191 BTLAQ7Z6A9 289 aa6.01□□□□□ -1.45
VPS35-207ENST00000568191 SERPINA10Q9UK55 444 aa6.01□□□□□ -1.45
VPS35-207ENST00000568191 NOVA2Q9UNW9 492 aaKnown RBP6.01□□□□□ -1.45
VPS35-207ENST00000568191 TGFBR3LH3BV60 316 aa6□□□□□ -1.45
VPS35-207ENST00000568191 ARID4AP29374 1257 aaPredicted RBP6□□□□□ -1.45
VPS35-207ENST00000568191 TYRO3Q06418 890 aa6□□□□□ -1.45
VPS35-207ENST00000568191 GRIN2CQ14957 1233 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms