RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 RGL2O15211 777 aa21.27■■□□□ 1
CLN3-229ENST00000567963 C16orf71Q8IYS4 520 aaPredicted RBP21.27■■□□□ 1
CLN3-229ENST00000567963 RBM46Q8TBY0 533 aaKnown RBP21.27■■□□□ 1
CLN3-229ENST00000567963 C21orf2O43822 256 aa21.26■□□□□ 0.99
CLN3-229ENST00000567963 SRGNP10124 158 aa21.26■□□□□ 0.99
CLN3-229ENST00000567963 RALBP1Q15311 655 aa21.26■□□□□ 0.99
CLN3-229ENST00000567963 NBPF5PQ86XG9 351 aaPredicted RBP21.26■□□□□ 0.99
CLN3-229ENST00000567963 KDM3BQ7LBC6 1761 aa21.26■□□□□ 0.99
CLN3-229ENST00000567963 APLP1P51693 650 aa21.26■□□□□ 0.99
CLN3-229ENST00000567963 EIF4A1P60842 406 aaKnown RBP21.26■□□□□ 0.99
CLN3-229ENST00000567963 STYK1Q6J9G0 422 aa21.26■□□□□ 0.99
CLN3-229ENST00000567963 CNKSR1Q969H4 720 aa21.26■□□□□ 0.99
CLN3-229ENST00000567963 THUMPD2Q9BTF0 503 aaKnown RBP21.26■□□□□ 0.99
CLN3-229ENST00000567963 MAPK8IP3Q9UPT6 1336 aa21.25■□□□□ 0.99
CLN3-229ENST00000567963 GLTPD2A6NH11 291 aa21.25■□□□□ 0.99
CLN3-229ENST00000567963 MASTLQ96GX5 879 aa21.25■□□□□ 0.99
CLN3-229ENST00000567963 ZNF219Q9P2Y4 722 aaPredicted RBP21.25■□□□□ 0.99
CLN3-229ENST00000567963 NIP7Q9Y221 180 aaKnown RBP eCLIP21.25■□□□□ 0.99
CLN3-229ENST00000567963 TNRC6CQ9HCJ0 1690 aaKnown RBP21.25■□□□□ 0.99
CLN3-229ENST00000567963 LAMB4A4D0S4 1761 aa21.24■□□□□ 0.99
CLN3-229ENST00000567963 HLFQ16534 295 aa21.24■□□□□ 0.99
CLN3-229ENST00000567963 TPTE2Q6XPS3 522 aa21.24■□□□□ 0.99
CLN3-229ENST00000567963 FER1L6Q2WGJ9 1857 aa21.23■□□□□ 0.99
CLN3-229ENST00000567963 SLX4Q8IY92 1834 aa21.23■□□□□ 0.99
CLN3-229ENST00000567963 KLRG2A4D1S0 409 aaPredicted RBP21.21■□□□□ 0.99
CLN3-229ENST00000567963 FSTL1Q12841 308 aa21.21■□□□□ 0.99
CLN3-229ENST00000567963 DDX10Q13206 875 aaKnown RBP21.21■□□□□ 0.99
CLN3-229ENST00000567963 PRPF40BQ6NWY9 871 aaKnown RBP21.21■□□□□ 0.99
CLN3-229ENST00000567963 NGEFQ8N5V2 710 aa21.21■□□□□ 0.99
CLN3-229ENST00000567963 TIAM2Q8IVF5 1701 aa21.21■□□□□ 0.99
CLN3-229ENST00000567963 CACNA1SQ13698 1873 aa21.2■□□□□ 0.98
CLN3-229ENST00000567963 ERVV-1B6SEH8 477 aa21.2■□□□□ 0.98
CLN3-229ENST00000567963 VEGFAP15692 232 aaPredicted RBP21.2■□□□□ 0.98
CLN3-229ENST00000567963 RIPK4P57078 832 aa21.2■□□□□ 0.98
CLN3-229ENST00000567963 RRP7AQ9Y3A4 280 aaKnown RBP21.2■□□□□ 0.98
CLN3-229ENST00000567963 LTBP3Q9NS15 1303 aa21.19■□□□□ 0.98
CLN3-229ENST00000567963 ARFGEF2Q9Y6D5 1785 aa21.19■□□□□ 0.98
CLN3-229ENST00000567963 DICER1Q9UPY3 1922 aaKnown RBP21.19■□□□□ 0.98
CLN3-229ENST00000567963 FAM177BA6PVY3 158 aa21.19■□□□□ 0.98
CLN3-229ENST00000567963 NPR1P16066 1061 aa21.19■□□□□ 0.98
CLN3-229ENST00000567963 ERFEQ4G0M1 354 aa21.19■□□□□ 0.98
CLN3-229ENST00000567963 SOGA3Q5TF21 947 aa21.19■□□□□ 0.98
CLN3-229ENST00000567963 DNAJC5GQ8N7S2 189 aa21.19■□□□□ 0.98
CLN3-229ENST00000567963 TAOK3Q9H2K8 898 aa21.19■□□□□ 0.98
CLN3-229ENST00000567963 DPY19L2Q6NUT2 758 aa21.18■□□□□ 0.98
CLN3-229ENST00000567963 C7orf43Q8WVR3 580 aa21.18■□□□□ 0.98
CLN3-229ENST00000567963 MYL6BP14649 208 aa21.17■□□□□ 0.98
CLN3-229ENST00000567963 TSPYL4Q9UJ04 414 aa21.17■□□□□ 0.98
CLN3-229ENST00000567963 MAP3K15Q6ZN16 1313 aa21.17■□□□□ 0.98
CLN3-229ENST00000567963 NUP98P52948 1817 aa21.17■□□□□ 0.98
CLN3-229ENST00000567963 TMPOP42166 694 aaKnown RBP21.16■□□□□ 0.98
CLN3-229ENST00000567963 TTLL7Q6ZT98 887 aa21.16■□□□□ 0.98
CLN3-229ENST00000567963 SMC1BQ8NDV3 1235 aa21.16■□□□□ 0.98
CLN3-229ENST00000567963 MYBBP1AQ9BQG0 1328 aaKnown RBP21.16■□□□□ 0.98
CLN3-229ENST00000567963 GTF2E1P29083 439 aaPredicted RBP21.15■□□□□ 0.98
CLN3-229ENST00000567963 KIF6Q6ZMV9 814 aa21.15■□□□□ 0.98
CLN3-229ENST00000567963 POTECB2RU33 542 aa21.14■□□□□ 0.98
CLN3-229ENST00000567963 NYXQ9GZU5 481 aa21.14■□□□□ 0.98
CLN3-229ENST00000567963 BABAM1Q9NWV8 329 aa21.14■□□□□ 0.98
CLN3-229ENST00000567963 WDR90Q96KV7 1748 aa21.14■□□□□ 0.97
CLN3-229ENST00000567963 ERBB4Q15303 1308 aa21.14■□□□□ 0.97
CLN3-229ENST00000567963 LMOD3Q0VAK6 560 aa21.13■□□□□ 0.97
CLN3-229ENST00000567963 ALDH1B1P30837 517 aa21.13■□□□□ 0.97
CLN3-229ENST00000567963 CCDC93Q567U6 631 aa21.13■□□□□ 0.97
CLN3-229ENST00000567963 ZBTB3Q9H5J0 574 aa21.13■□□□□ 0.97
CLN3-229ENST00000567963 HTRA3P83110 453 aa21.12■□□□□ 0.97
CLN3-229ENST00000567963 NUTM1Q86Y26 1132 aa21.12■□□□□ 0.97
CLN3-229ENST00000567963 EIF2S2P20042 333 aaKnown RBP21.11■□□□□ 0.97
CLN3-229ENST00000567963 PDIA6Q15084 440 aa21.11■□□□□ 0.97
CLN3-229ENST00000567963 CRY2Q49AN0 593 aa21.11■□□□□ 0.97
CLN3-229ENST00000567963 LRP10Q7Z4F1 713 aa21.11■□□□□ 0.97
CLN3-229ENST00000567963 CCDC146Q8IYE0 955 aa21.11■□□□□ 0.97
CLN3-229ENST00000567963 ZNF34Q8IZ26 560 aa21.11■□□□□ 0.97
CLN3-229ENST00000567963 UBN2Q6ZU65 1347 aa21.1■□□□□ 0.97
CLN3-229ENST00000567963 GPTP24298 496 aa21.1■□□□□ 0.97
CLN3-229ENST00000567963 OLFM4Q6UX06 510 aa21.1■□□□□ 0.97
CLN3-229ENST00000567963 GIGYF2Q6Y7W6 1299 aaKnown RBP21.1■□□□□ 0.97
CLN3-229ENST00000567963 DDNO94850 711 aaPredicted RBP21.09■□□□□ 0.97
CLN3-229ENST00000567963 FKBP4Q02790 459 aaKnown RBP eCLIP21.09■□□□□ 0.97
CLN3-229ENST00000567963 NEUROD2Q15784 382 aa21.09■□□□□ 0.97
CLN3-229ENST00000567963 SUSD4Q5VX71 490 aa21.09■□□□□ 0.97
CLN3-229ENST00000567963 RTKN2Q8IZC4 609 aa21.09■□□□□ 0.97
CLN3-229ENST00000567963 ABCC12Q96J65 1359 aa21.09■□□□□ 0.97
CLN3-229ENST00000567963 RUNDC1Q96C34 613 aa21.08■□□□□ 0.97
CLN3-229ENST00000567963 IBTKQ9P2D0 1353 aaPredicted RBP21.08■□□□□ 0.97
CLN3-229ENST00000567963 WDR43Q15061 677 aaKnown RBP eCLIP21.07■□□□□ 0.96
CLN3-229ENST00000567963 PROSER3Q2NL68 480 aa21.07■□□□□ 0.96
CLN3-229ENST00000567963 KLRG1Q96E93 195 aa21.07■□□□□ 0.96
CLN3-229ENST00000567963 ZNF277Q9NRM2 450 aaPredicted RBP21.07■□□□□ 0.96
CLN3-229ENST00000567963 ADAMTS8Q9UP79 889 aa21.07■□□□□ 0.96
CLN3-229ENST00000567963 TRIM35Q9UPQ4 493 aa21.07■□□□□ 0.96
CLN3-229ENST00000567963 RIC1Q4ADV7 1423 aa21.06■□□□□ 0.96
CLN3-229ENST00000567963 PCNTO95613 3336 aa21.06■□□□□ 0.96
CLN3-229ENST00000567963 CHL1O00533 1208 aa21.06■□□□□ 0.96
CLN3-229ENST00000567963 ANXA1P04083 346 aa21.06■□□□□ 0.96
CLN3-229ENST00000567963 NTSR2O95665 410 aa21.05■□□□□ 0.96
CLN3-229ENST00000567963 HOXA10P31260 410 aaPredicted RBP21.05■□□□□ 0.96
CLN3-229ENST00000567963 PPP1R42Q7Z4L9 355 aa21.05■□□□□ 0.96
CLN3-229ENST00000567963 RPGRQ92834 1020 aaKnown RBP21.05■□□□□ 0.96
CLN3-229ENST00000567963 PARP10Q53GL7 1025 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms