RNA–Protein interactions for RNA: ENST00000567023.5

COMMD4-216, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 926 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-216ENST00000567023 BABAM1Q9NWV8 329 aa18.78■□□□□ 0.6
COMMD4-216ENST00000567023 SRGNP10124 158 aa18.77■□□□□ 0.6
COMMD4-216ENST00000567023 HSPA6P17066 643 aa18.77■□□□□ 0.6
COMMD4-216ENST00000567023 TMPOP42166 694 aaKnown RBP18.77■□□□□ 0.6
COMMD4-216ENST00000567023 RASSF7Q02833 373 aa18.77■□□□□ 0.6
COMMD4-216ENST00000567023 STYK1Q6J9G0 422 aa18.77■□□□□ 0.6
COMMD4-216ENST00000567023 NBPF5PQ86XG9 351 aaPredicted RBP18.77■□□□□ 0.6
COMMD4-216ENST00000567023 NMRK2Q9NPI5 230 aa18.77■□□□□ 0.6
COMMD4-216ENST00000567023 KDM2BQ8NHM5 1336 aa18.76■□□□□ 0.59
COMMD4-216ENST00000567023 KLRG2A4D1S0 409 aaPredicted RBP18.76■□□□□ 0.59
COMMD4-216ENST00000567023 ERVV-1B6SEH8 477 aa18.76■□□□□ 0.59
COMMD4-216ENST00000567023 NFKBIEO00221 500 aa18.76■□□□□ 0.59
COMMD4-216ENST00000567023 NPHP1O15259 732 aa18.76■□□□□ 0.59
COMMD4-216ENST00000567023 PRELPP51888 382 aa18.76■□□□□ 0.59
COMMD4-216ENST00000567023 HLFQ16534 295 aa18.76■□□□□ 0.59
COMMD4-216ENST00000567023 TPTE2Q6XPS3 522 aa18.76■□□□□ 0.59
COMMD4-216ENST00000567023 CNKSR1Q969H4 720 aa18.76■□□□□ 0.59
COMMD4-216ENST00000567023 NIP7Q9Y221 180 aaKnown RBP eCLIP18.76■□□□□ 0.59
COMMD4-216ENST00000567023 COL11A2P13942 1736 aaPredicted RBP18.75■□□□□ 0.59
COMMD4-216ENST00000567023 LMOD3Q0VAK6 560 aa18.75■□□□□ 0.59
COMMD4-216ENST00000567023 MASTLQ96GX5 879 aa18.75■□□□□ 0.59
COMMD4-216ENST00000567023 ERBB4Q15303 1308 aa18.74■□□□□ 0.59
COMMD4-216ENST00000567023 TSPYL4Q9UJ04 414 aa18.74■□□□□ 0.59
COMMD4-216ENST00000567023 C21orf2O43822 256 aa18.73■□□□□ 0.59
COMMD4-216ENST00000567023 ZEB1P37275 1124 aaPredicted RBP18.73■□□□□ 0.59
COMMD4-216ENST00000567023 MAP3K15Q6ZN16 1313 aa18.73■□□□□ 0.59
COMMD4-216ENST00000567023 RRP7AQ9Y3A4 280 aaKnown RBP18.72■□□□□ 0.59
COMMD4-216ENST00000567023 LTBP3Q9NS15 1303 aa18.72■□□□□ 0.59
COMMD4-216ENST00000567023 FER1L6Q2WGJ9 1857 aa18.71■□□□□ 0.59
COMMD4-216ENST00000567023 GLTPD2A6NH11 291 aa18.71■□□□□ 0.59
COMMD4-216ENST00000567023 NPR1P16066 1061 aa18.71■□□□□ 0.59
COMMD4-216ENST00000567023 SOGA3Q5TF21 947 aa18.71■□□□□ 0.59
COMMD4-216ENST00000567023 PRPF40BQ6NWY9 871 aaKnown RBP18.71■□□□□ 0.59
COMMD4-216ENST00000567023 NGEFQ8N5V2 710 aa18.71■□□□□ 0.59
COMMD4-216ENST00000567023 RBM46Q8TBY0 533 aaKnown RBP18.71■□□□□ 0.59
COMMD4-216ENST00000567023 C7orf43Q8WVR3 580 aa18.71■□□□□ 0.59
COMMD4-216ENST00000567023 RUNDC1Q96C34 613 aa18.71■□□□□ 0.59
COMMD4-216ENST00000567023 PRKRIP1Q9H875 184 aaPredicted RBP18.71■□□□□ 0.59
COMMD4-216ENST00000567023 SLX4Q8IY92 1834 aa18.7■□□□□ 0.58
COMMD4-216ENST00000567023 MYL6BP14649 208 aa18.7■□□□□ 0.58
COMMD4-216ENST00000567023 WDR43Q15061 677 aaKnown RBP eCLIP18.7■□□□□ 0.58
COMMD4-216ENST00000567023 KIF6Q6ZMV9 814 aa18.7■□□□□ 0.58
COMMD4-216ENST00000567023 TTLL7Q6ZT98 887 aa18.7■□□□□ 0.58
COMMD4-216ENST00000567023 LRP10Q7Z4F1 713 aa18.7■□□□□ 0.58
COMMD4-216ENST00000567023 RRAGCQ9HB90 399 aa18.7■□□□□ 0.58
COMMD4-216ENST00000567023 ADAMTS8Q9UP79 889 aa18.7■□□□□ 0.58
COMMD4-216ENST00000567023 ARFGEF2Q9Y6D5 1785 aa18.69■□□□□ 0.58
COMMD4-216ENST00000567023 PDIA6Q15084 440 aa18.69■□□□□ 0.58
COMMD4-216ENST00000567023 CCDC146Q8IYE0 955 aa18.69■□□□□ 0.58
COMMD4-216ENST00000567023 NYXQ9GZU5 481 aa18.69■□□□□ 0.58
COMMD4-216ENST00000567023 TRIM35Q9UPQ4 493 aa18.69■□□□□ 0.58
COMMD4-216ENST00000567023 CCDC88AQ3V6T2 1871 aa18.69■□□□□ 0.58
COMMD4-216ENST00000567023 NUP98P52948 1817 aa18.68■□□□□ 0.58
COMMD4-216ENST00000567023 CHL1O00533 1208 aa18.68■□□□□ 0.58
COMMD4-216ENST00000567023 C16orf71Q8IYS4 520 aaPredicted RBP18.68■□□□□ 0.58
COMMD4-216ENST00000567023 TAOK3Q9H2K8 898 aa18.68■□□□□ 0.58
COMMD4-216ENST00000567023 ZNF219Q9P2Y4 722 aaPredicted RBP18.68■□□□□ 0.58
COMMD4-216ENST00000567023 TNRC6CQ9HCJ0 1690 aaKnown RBP18.68■□□□□ 0.58
COMMD4-216ENST00000567023 APLP1P51693 650 aa18.67■□□□□ 0.58
COMMD4-216ENST00000567023 FSTL1Q12841 308 aa18.67■□□□□ 0.58
COMMD4-216ENST00000567023 CRY2Q49AN0 593 aa18.67■□□□□ 0.58
COMMD4-216ENST00000567023 GIGYF2Q6Y7W6 1299 aaKnown RBP18.67■□□□□ 0.58
COMMD4-216ENST00000567023 ZNF34Q8IZ26 560 aa18.67■□□□□ 0.58
COMMD4-216ENST00000567023 IBTKQ9P2D0 1353 aaPredicted RBP18.67■□□□□ 0.58
COMMD4-216ENST00000567023 FAM177BA6PVY3 158 aa18.66■□□□□ 0.58
COMMD4-216ENST00000567023 VEGFAP15692 232 aaPredicted RBP18.66■□□□□ 0.58
COMMD4-216ENST00000567023 GTF2E1P29083 439 aaPredicted RBP18.66■□□□□ 0.58
COMMD4-216ENST00000567023 ALDH1B1P30837 517 aa18.66■□□□□ 0.58
COMMD4-216ENST00000567023 NEUROD2Q15784 382 aa18.66■□□□□ 0.58
COMMD4-216ENST00000567023 ERFEQ4G0M1 354 aa18.66■□□□□ 0.58
COMMD4-216ENST00000567023 ZBTB3Q9H5J0 574 aa18.66■□□□□ 0.58
COMMD4-216ENST00000567023 DICER1Q9UPY3 1922 aaKnown RBP18.65■□□□□ 0.58
COMMD4-216ENST00000567023 EIF2S2P20042 333 aaKnown RBP18.65■□□□□ 0.58
COMMD4-216ENST00000567023 DPY19L2Q6NUT2 758 aa18.65■□□□□ 0.58
COMMD4-216ENST00000567023 UBN2Q6ZU65 1347 aa18.65■□□□□ 0.58
COMMD4-216ENST00000567023 RIC1Q4ADV7 1423 aa18.65■□□□□ 0.58
COMMD4-216ENST00000567023 TIAM2Q8IVF5 1701 aa18.64■□□□□ 0.57
COMMD4-216ENST00000567023 CCDC93Q567U6 631 aa18.64■□□□□ 0.57
COMMD4-216ENST00000567023 CACNA1SQ13698 1873 aa18.63■□□□□ 0.57
COMMD4-216ENST00000567023 PROSER3Q2NL68 480 aa18.63■□□□□ 0.57
COMMD4-216ENST00000567023 SUSD4Q5VX71 490 aa18.63■□□□□ 0.57
COMMD4-216ENST00000567023 NUTM1Q86Y26 1132 aa18.63■□□□□ 0.57
COMMD4-216ENST00000567023 ABCC12Q96J65 1359 aa18.63■□□□□ 0.57
COMMD4-216ENST00000567023 POTECB2RU33 542 aa18.62■□□□□ 0.57
COMMD4-216ENST00000567023 GPTP24298 496 aa18.62■□□□□ 0.57
COMMD4-216ENST00000567023 HOXA10P31260 410 aaPredicted RBP18.62■□□□□ 0.57
COMMD4-216ENST00000567023 PARP10Q53GL7 1025 aa18.62■□□□□ 0.57
COMMD4-216ENST00000567023 RTKN2Q8IZC4 609 aa18.62■□□□□ 0.57
COMMD4-216ENST00000567023 NTSR2O95665 410 aa18.61■□□□□ 0.57
COMMD4-216ENST00000567023 HOXB7P09629 217 aa18.61■□□□□ 0.57
COMMD4-216ENST00000567023 FKBP4Q02790 459 aaKnown RBP eCLIP18.61■□□□□ 0.57
COMMD4-216ENST00000567023 PPP1R42Q7Z4L9 355 aa18.61■□□□□ 0.57
COMMD4-216ENST00000567023 DNAJC5GQ8N7S2 189 aa18.61■□□□□ 0.57
COMMD4-216ENST00000567023 SMC1BQ8NDV3 1235 aa18.61■□□□□ 0.57
COMMD4-216ENST00000567023 CFAP44Q96MT7 982 aa18.61■□□□□ 0.57
COMMD4-216ENST00000567023 DDX21Q9NR30 783 aaKnown RBP eCLIP18.61■□□□□ 0.57
COMMD4-216ENST00000567023 WDR90Q96KV7 1748 aa18.6■□□□□ 0.57
COMMD4-216ENST00000567023 ANXA1P04083 346 aa18.6■□□□□ 0.57
COMMD4-216ENST00000567023 KRT24Q2M2I5 525 aa18.6■□□□□ 0.57
COMMD4-216ENST00000567023 COPS6Q7L5N1 327 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms