RNA–Protein interactions for RNA: ENST00000564641.1

CHD9-212, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 4

Gene CHD9, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-212ENST00000564641 C1orf229Q6ZS94 237 aaPredicted RBP9.34□□□□□ -0.91
CHD9-212ENST00000564641 STAG2Q8N3U4 1231 aa9.34□□□□□ -0.91
CHD9-212ENST00000564641 MARK1Q9P0L2 795 aa9.34□□□□□ -0.91
CHD9-212ENST00000564641 DKK1O94907 266 aa9.33□□□□□ -0.92
CHD9-212ENST00000564641 CD33P20138 364 aa9.33□□□□□ -0.92
CHD9-212ENST00000564641 TBCELQ5QJ74 424 aa9.33□□□□□ -0.92
CHD9-212ENST00000564641 RHPN1Q8TCX5 695 aa9.33□□□□□ -0.92
CHD9-212ENST00000564641 RRAGCQ9HB90 399 aa9.33□□□□□ -0.92
CHD9-212ENST00000564641 PRR12Q9ULL5 1215 aa9.33□□□□□ -0.92
CHD9-212ENST00000564641 HIF1AQ16665 826 aa9.32□□□□□ -0.92
CHD9-212ENST00000564641 ZNF468Q5VIY5 522 aaPredicted RBP9.32□□□□□ -0.92
CHD9-212ENST00000564641 LRRC69Q6ZNQ3 347 aa9.32□□□□□ -0.92
CHD9-212ENST00000564641 TSEN2Q8NCE0 465 aaKnown RBP9.32□□□□□ -0.92
CHD9-212ENST00000564641 SFI1A8K8P3 1242 aa9.31□□□□□ -0.92
CHD9-212ENST00000564641 NEURL1BA8MQ27 555 aa9.31□□□□□ -0.92
CHD9-212ENST00000564641 C7orf43Q8WVR3 580 aa9.31□□□□□ -0.92
CHD9-212ENST00000564641 FAM196BA6NMK8 535 aa9.3□□□□□ -0.92
CHD9-212ENST00000564641 PPP1R12BO60237 982 aaPredicted RBP9.3□□□□□ -0.92
CHD9-212ENST00000564641 SNRPNP63162 240 aaKnown RBP9.3□□□□□ -0.92
CHD9-212ENST00000564641 DCAF5Q96JK2 942 aa9.3□□□□□ -0.92
CHD9-212ENST00000564641 BTBD6Q96KE9 485 aa9.3□□□□□ -0.92
CHD9-212ENST00000564641 VRTNQ9H8Y1 702 aa9.3□□□□□ -0.92
CHD9-212ENST00000564641 ATAD2Q6PL18 1390 aa9.29□□□□□ -0.92
CHD9-212ENST00000564641 PTK7Q13308 1070 aa9.29□□□□□ -0.92
CHD9-212ENST00000564641 NEUROD1Q13562 356 aa9.29□□□□□ -0.92
CHD9-212ENST00000564641 KANK4Q5T7N3 995 aaPredicted RBP9.29□□□□□ -0.92
CHD9-212ENST00000564641 GPAT2Q6NUI2 795 aa9.29□□□□□ -0.92
CHD9-212ENST00000564641 GNB5O14775 395 aa9.28□□□□□ -0.92
CHD9-212ENST00000564641 SH3PXD2AQ5TCZ1 1133 aa9.28□□□□□ -0.92
CHD9-212ENST00000564641 PHACTR1Q9C0D0 580 aa9.28□□□□□ -0.92
CHD9-212ENST00000564641 HCN2Q9UL51 889 aa9.28□□□□□ -0.92
CHD9-212ENST00000564641 HCN4Q9Y3Q4 1203 aa9.28□□□□□ -0.92
CHD9-212ENST00000564641 C21orf2O43822 256 aa9.27□□□□□ -0.93
CHD9-212ENST00000564641 LMOD1P29536 600 aaPredicted RBP9.27□□□□□ -0.93
CHD9-212ENST00000564641 SCG3Q8WXD2 468 aaKnown RBP9.27□□□□□ -0.93
CHD9-212ENST00000564641 C2orf49Q9BVC5 232 aaPredicted RBP9.27□□□□□ -0.93
CHD9-212ENST00000564641 NOP53Q9NZM5 478 aaKnown RBP9.27□□□□□ -0.93
CHD9-212ENST00000564641 USP17L15C9J2P7 530 aa9.26□□□□□ -0.93
CHD9-212ENST00000564641 USP17L10C9JJH3 530 aa9.26□□□□□ -0.93
CHD9-212ENST00000564641 USP17L13C9JLJ4 530 aa9.26□□□□□ -0.93
CHD9-212ENST00000564641 USP17L12C9JPN9 530 aa9.26□□□□□ -0.93
CHD9-212ENST00000564641 USP17L11C9JVI0 530 aa9.26□□□□□ -0.93
CHD9-212ENST00000564641 USP17L21D6R901 530 aa9.26□□□□□ -0.93
CHD9-212ENST00000564641 USP17L18D6R9N7 530 aa9.26□□□□□ -0.93
CHD9-212ENST00000564641 USP17L22D6RA61 530 aa9.26□□□□□ -0.93
CHD9-212ENST00000564641 USP17L17D6RBQ6 530 aa9.26□□□□□ -0.93
CHD9-212ENST00000564641 USP17L19D6RCP7 530 aa9.26□□□□□ -0.93
CHD9-212ENST00000564641 USP17L20D6RJB6 530 aa9.26□□□□□ -0.93
CHD9-212ENST00000564641 ALAS2P22557 587 aa9.26□□□□□ -0.93
CHD9-212ENST00000564641 USP17L24Q0WX57 530 aa9.26□□□□□ -0.93
CHD9-212ENST00000564641 CRTC2Q53ET0 693 aaPredicted RBP9.26□□□□□ -0.93
CHD9-212ENST00000564641 LINC00114Q6XXX2 140 aa9.26□□□□□ -0.93
CHD9-212ENST00000564641 FCHSD1Q86WN1 690 aa9.26□□□□□ -0.93
CHD9-212ENST00000564641 ANKMY2Q8IV38 441 aa9.26□□□□□ -0.93
CHD9-212ENST00000564641 HINFPQ9BQA5 517 aa9.26□□□□□ -0.93
CHD9-212ENST00000564641 STRN4Q9NRL3 753 aa9.26□□□□□ -0.93
CHD9-212ENST00000564641 KLF15Q9UIH9 416 aa9.26□□□□□ -0.93
CHD9-212ENST00000564641 SIN3BO75182 1162 aa9.25□□□□□ -0.93
CHD9-212ENST00000564641 DGKGP49619 791 aa9.25□□□□□ -0.93
CHD9-212ENST00000564641 KCNQ4P56696 695 aa9.25□□□□□ -0.93
CHD9-212ENST00000564641 DPYDQ12882 1025 aa9.25□□□□□ -0.93
CHD9-212ENST00000564641 PLA2G4EQ3MJ16 856 aa9.25□□□□□ -0.93
CHD9-212ENST00000564641 CHSY3Q70JA7 882 aa9.25□□□□□ -0.93
CHD9-212ENST00000564641 ALDH16A1Q8IZ83 802 aa9.25□□□□□ -0.93
CHD9-212ENST00000564641 SUSD3Q96L08 255 aa9.25□□□□□ -0.93
CHD9-212ENST00000564641 CEP63Q96MT8 703 aa9.25□□□□□ -0.93
CHD9-212ENST00000564641 ELOA3CA0A087WX78 387 aaPredicted RBP9.24□□□□□ -0.93
CHD9-212ENST00000564641 ELOA3DA6NLF2 546 aaPredicted RBP9.24□□□□□ -0.93
CHD9-212ENST00000564641 HOXB4P17483 251 aaPredicted RBP9.24□□□□□ -0.93
CHD9-212ENST00000564641 IGFBP4P22692 258 aa9.24□□□□□ -0.93
CHD9-212ENST00000564641 PCBP4P57723 403 aaKnown RBP9.24□□□□□ -0.93
CHD9-212ENST00000564641 ELOA3BQ3SY89 546 aa9.24□□□□□ -0.93
CHD9-212ENST00000564641 SYT9Q86SS6 491 aa9.24□□□□□ -0.93
CHD9-212ENST00000564641 ELOA3Q8NG57 546 aa9.24□□□□□ -0.93
CHD9-212ENST00000564641 BRD7Q9NPI1 651 aa9.24□□□□□ -0.93
CHD9-212ENST00000564641 MSTNO14793 375 aa9.23□□□□□ -0.93
CHD9-212ENST00000564641 CHMP7Q8WUX9 453 aaPredicted RBP9.23□□□□□ -0.93
CHD9-212ENST00000564641 EFCC1Q9HA90 598 aa9.23□□□□□ -0.93
CHD9-212ENST00000564641 ZNF777Q9ULD5 760 aaPredicted RBP9.23□□□□□ -0.93
CHD9-212ENST00000564641 ADARB2-AS1A8MUL3 147 aa9.22□□□□□ -0.93
CHD9-212ENST00000564641 RTN1Q16799 776 aa9.22□□□□□ -0.93
CHD9-212ENST00000564641 KCNH4Q9UQ05 1017 aa9.22□□□□□ -0.93
CHD9-212ENST00000564641 TYRO3Q06418 890 aa9.21□□□□□ -0.94
CHD9-212ENST00000564641 SPEM2Q0P670 501 aa9.21□□□□□ -0.94
CHD9-212ENST00000564641 SFSWAPQ12872 951 aaKnown RBP9.21□□□□□ -0.94
CHD9-212ENST00000564641 CFAP70Q5T0N1 1121 aa9.21□□□□□ -0.94
CHD9-212ENST00000564641 IER5Q5VY09 327 aa9.21□□□□□ -0.94
CHD9-212ENST00000564641 TNFRSF25Q93038 417 aa9.21□□□□□ -0.94
CHD9-212ENST00000564641 HSH2DQ96JZ2 352 aa9.21□□□□□ -0.94
CHD9-212ENST00000564641 BTLAQ7Z6A9 289 aa9.2□□□□□ -0.94
CHD9-212ENST00000564641 FAM200AQ8TCP9 573 aa9.2□□□□□ -0.94
CHD9-212ENST00000564641 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.2□□□□□ -0.945e-11■■■■■ 129.8
CHD9-212ENST00000564641 FOXO3O43524 673 aa9.19□□□□□ -0.94
CHD9-212ENST00000564641 RFX1P22670 979 aa9.19□□□□□ -0.94
CHD9-212ENST00000564641 GRIN2CQ14957 1233 aa9.19□□□□□ -0.94
CHD9-212ENST00000564641 ZNF280CQ8ND82 737 aa9.19□□□□□ -0.94
CHD9-212ENST00000564641 NGLY1Q96IV0 654 aa9.19□□□□□ -0.94
CHD9-212ENST00000564641 ARXQ96QS3 562 aa9.19□□□□□ -0.94
CHD9-212ENST00000564641 MDFIQ99750 246 aa9.19□□□□□ -0.94
CHD9-212ENST00000564641 SPDYE3A6NKU9 549 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms