RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 FAM13AO94988 1023 aa8.1□□□□□ -1.11
LINC00560-201ENST00000564593 C4orf17Q53FE4 359 aa8.1□□□□□ -1.11
LINC00560-201ENST00000564593 PHKA2P46019 1235 aa8.09□□□□□ -1.11
LINC00560-201ENST00000564593 PLA2G4AP47712 749 aa8.09□□□□□ -1.11
LINC00560-201ENST00000564593 ECM1Q16610 540 aa8.09□□□□□ -1.11
LINC00560-201ENST00000564593 GPR161Q8N6U8 529 aaKnown RBP8.09□□□□□ -1.11
LINC00560-201ENST00000564593 FOXD4L4Q8WXT5 416 aaPredicted RBP8.09□□□□□ -1.11
LINC00560-201ENST00000564593 MYO19Q96H55 970 aa8.09□□□□□ -1.11
LINC00560-201ENST00000564593 CNTNAP3BQ96NU0 1288 aa8.09□□□□□ -1.11
LINC00560-201ENST00000564593 CNTNAP3Q9BZ76 1288 aa8.09□□□□□ -1.11
LINC00560-201ENST00000564593 PHACTR1Q9C0D0 580 aa8.09□□□□□ -1.11
LINC00560-201ENST00000564593 LRFN2Q9ULH4 789 aa8.09□□□□□ -1.11
LINC00560-201ENST00000564593 SOS2Q07890 1332 aaPredicted RBP8.09□□□□□ -1.12
LINC00560-201ENST00000564593 IGHA1P01876 353 aa8.08□□□□□ -1.12
LINC00560-201ENST00000564593 PRICKLE2Q7Z3G6 844 aa8.08□□□□□ -1.12
LINC00560-201ENST00000564593 AIDAQ96BJ3 306 aa8.08□□□□□ -1.12
LINC00560-201ENST00000564593 STIM2Q9P246 746 aa8.08□□□□□ -1.12
LINC00560-201ENST00000564593 DNMT3LQ9UJW3 386 aa8.08□□□□□ -1.12
LINC00560-201ENST00000564593 SPATA31C2B4DYI2 1134 aa8.07□□□□□ -1.12
LINC00560-201ENST00000564593 NPR3P17342 541 aa8.07□□□□□ -1.12
LINC00560-201ENST00000564593 MPSTP25325 297 aa8.07□□□□□ -1.12
LINC00560-201ENST00000564593 ARHGAP4P98171 946 aa8.07□□□□□ -1.12
LINC00560-201ENST00000564593 POU4F2Q12837 409 aa8.07□□□□□ -1.12
LINC00560-201ENST00000564593 RTN1Q16799 776 aa8.07□□□□□ -1.12
LINC00560-201ENST00000564593 NPM2Q86SE8 214 aaKnown RBP8.07□□□□□ -1.12
LINC00560-201ENST00000564593 RNF217Q8TC41 542 aa8.07□□□□□ -1.12
LINC00560-201ENST00000564593 TTLL8A6PVC2 850 aa8.06□□□□□ -1.12
LINC00560-201ENST00000564593 TNFRSF10BO14763 440 aa8.06□□□□□ -1.12
LINC00560-201ENST00000564593 TXLNAP40222 546 aa8.06□□□□□ -1.12
LINC00560-201ENST00000564593 C1orf53Q5VUE5 145 aa8.06□□□□□ -1.12
LINC00560-201ENST00000564593 LYSMD3Q7Z3D4 306 aa8.06□□□□□ -1.12
LINC00560-201ENST00000564593 BRD2P25440 801 aaKnown RBP8.05□□□□□ -1.12
LINC00560-201ENST00000564593 MAPK1P28482 360 aa8.05□□□□□ -1.12
LINC00560-201ENST00000564593 DGKZQ13574 1117 aa8.05□□□□□ -1.12
LINC00560-201ENST00000564593 NBPF1Q3BBV0 1214 aa8.05□□□□□ -1.12
LINC00560-201ENST00000564593 C11orf91Q3C1V1 193 aa8.05□□□□□ -1.12
LINC00560-201ENST00000564593 ZNF385CQ66K41 422 aaPredicted RBP8.05□□□□□ -1.12
LINC00560-201ENST00000564593 GPAT2Q6NUI2 795 aa8.05□□□□□ -1.12
LINC00560-201ENST00000564593 NBPF10Q6P3W6 841 aaKnown RBP8.05□□□□□ -1.12
LINC00560-201ENST00000564593 FIGNL2A6NMB9 653 aa8.05□□□□□ -1.12
LINC00560-201ENST00000564593 AAMPQ13685 434 aa8.05□□□□□ -1.12
LINC00560-201ENST00000564593 NOM1Q5C9Z4 860 aaKnown RBP8.05□□□□□ -1.12
LINC00560-201ENST00000564593 DNAJC14Q6Y2X3 702 aaPredicted RBP8.05□□□□□ -1.12
LINC00560-201ENST00000564593 ABTB2Q8N961 1025 aa8.05□□□□□ -1.12
LINC00560-201ENST00000564593 COL25A1Q9BXS0 654 aaPredicted RBP8.05□□□□□ -1.12
LINC00560-201ENST00000564593 KLK14Q9P0G3 267 aa8.05□□□□□ -1.12
LINC00560-201ENST00000564593 DCTN4Q9UJW0 460 aa8.05□□□□□ -1.12
LINC00560-201ENST00000564593 ERCC3P19447 782 aa8.04□□□□□ -1.12
LINC00560-201ENST00000564593 EIF1AXP47813 144 aaKnown RBP8.04□□□□□ -1.12
LINC00560-201ENST00000564593 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.04□□□□□ -1.12
LINC00560-201ENST00000564593 WDR44Q5JSH3 913 aa8.04□□□□□ -1.12
LINC00560-201ENST00000564593 ALKBH2Q6NS38 261 aa8.04□□□□□ -1.12
LINC00560-201ENST00000564593 SVOPQ8N4V2 548 aa8.04□□□□□ -1.12
LINC00560-201ENST00000564593 NANOS1Q8WY41 292 aaKnown RBP8.04□□□□□ -1.12
LINC00560-201ENST00000564593 ZDHHC3Q9NYG2 299 aa8.04□□□□□ -1.12
LINC00560-201ENST00000564593 RHOQP17081 205 aa8.03□□□□□ -1.12
LINC00560-201ENST00000564593 TATP17735 454 aaPredicted RBP8.03□□□□□ -1.12
LINC00560-201ENST00000564593 RHPN1Q8TCX5 695 aa8.03□□□□□ -1.12
LINC00560-201ENST00000564593 IFT43Q96FT9 208 aa8.03□□□□□ -1.12
LINC00560-201ENST00000564593 IRS1P35568 1242 aa8.02□□□□□ -1.13
LINC00560-201ENST00000564593 TIMMDC1Q9NPL8 285 aa8.02□□□□□ -1.13
LINC00560-201ENST00000564593 ANKRD33BA6NCL7 494 aa8.01□□□□□ -1.13
LINC00560-201ENST00000564593 ZBTB39O15060 712 aa8.01□□□□□ -1.13
LINC00560-201ENST00000564593 NDUFB5O43674 189 aa8.01□□□□□ -1.13
LINC00560-201ENST00000564593 ARHGEF15O94989 841 aa8.01□□□□□ -1.13
LINC00560-201ENST00000564593 PTSQ03393 145 aa8.01□□□□□ -1.13
LINC00560-201ENST00000564593 FAM26DQ5JW98 314 aa8.01□□□□□ -1.13
LINC00560-201ENST00000564593 KANK3Q6NY19 840 aa8.01□□□□□ -1.13
LINC00560-201ENST00000564593 ZSCAN29Q8IWY8 852 aaPredicted RBP8.01□□□□□ -1.13
LINC00560-201ENST00000564593 BRPF3Q9ULD4 1205 aa8.01□□□□□ -1.13
LINC00560-201ENST00000564593 AMOTL2Q9Y2J4 779 aa8.01□□□□□ -1.13
LINC00560-201ENST00000564593 SLURP2P0DP57 97 aa8.01□□□□□ -1.13
LINC00560-201ENST00000564593 HIF1AQ16665 826 aa8.01□□□□□ -1.13
LINC00560-201ENST00000564593 BICDL1Q6ZP65 573 aa8.01□□□□□ -1.13
LINC00560-201ENST00000564593 ETFBKMTQ8IXQ9 262 aa8.01□□□□□ -1.13
LINC00560-201ENST00000564593 C7orf43Q8WVR3 580 aa8.01□□□□□ -1.13
LINC00560-201ENST00000564593 A0A1B0GTH6 734 aa8□□□□□ -1.13
LINC00560-201ENST00000564593 FZD6O60353 706 aa8□□□□□ -1.13
LINC00560-201ENST00000564593 RNFT1Q5M7Z0 435 aa8□□□□□ -1.13
LINC00560-201ENST00000564593 ATCAYQ86WG3 371 aa8□□□□□ -1.13
LINC00560-201ENST00000564593 ASB16Q96NS5 453 aa8□□□□□ -1.13
LINC00560-201ENST00000564593 NEUROD4Q9HD90 331 aa8□□□□□ -1.13
LINC00560-201ENST00000564593 CCDC87Q9NVE4 849 aa8□□□□□ -1.13
LINC00560-201ENST00000564593 MSX1P28360 303 aa7.99□□□□□ -1.13
LINC00560-201ENST00000564593 ARSJQ5FYB0 599 aaPredicted RBP7.99□□□□□ -1.13
LINC00560-201ENST00000564593 TREML1Q86YW5 311 aa7.99□□□□□ -1.13
LINC00560-201ENST00000564593 TMC1Q8TDI8 760 aa7.99□□□□□ -1.13
LINC00560-201ENST00000564593 WHAMMQ8TF30 809 aa7.99□□□□□ -1.13
LINC00560-201ENST00000564593 SUSD3Q96L08 255 aa7.99□□□□□ -1.13
LINC00560-201ENST00000564593 BCS1LQ9Y276 419 aa7.99□□□□□ -1.13
LINC00560-201ENST00000564593 GPC6Q9Y625 555 aaPredicted RBP7.99□□□□□ -1.13
LINC00560-201ENST00000564593 ATP4AP20648 1035 aa7.98□□□□□ -1.13
LINC00560-201ENST00000564593 ZAP70P43403 619 aa7.98□□□□□ -1.13
LINC00560-201ENST00000564593 RBM25P49756 843 aaKnown RBP7.98□□□□□ -1.13
LINC00560-201ENST00000564593 ZNF428Q96B54 188 aa7.98□□□□□ -1.13
LINC00560-201ENST00000564593 RBCK1Q9BYM8 510 aa7.98□□□□□ -1.13
LINC00560-201ENST00000564593 ANKIB1Q9P2G1 1089 aa7.98□□□□□ -1.13
LINC00560-201ENST00000564593 XP32Q5T750 250 aa7.97□□□□□ -1.13
LINC00560-201ENST00000564593 CCDC155Q8N6L0 562 aa7.97□□□□□ -1.13
LINC00560-201ENST00000564593 ZNF280CQ8ND82 737 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms