RNA–Protein interactions for RNA: ENST00000564387.5

USB1-209, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-209ENST00000564387 DBF4Q9UBU7 674 aaPredicted RBP22.42■■□□□ 1.18
USB1-209ENST00000564387 ZNF652Q9Y2D9 606 aa22.42■■□□□ 1.18
USB1-209ENST00000564387 KIAA1551Q9HCM1 1747 aa22.42■■□□□ 1.18
USB1-209ENST00000564387 SERPINB2P05120 415 aa22.41■■□□□ 1.18
USB1-209ENST00000564387 CHMP4AQ9BY43 222 aa22.41■■□□□ 1.18
USB1-209ENST00000564387 CHPF2Q9P2E5 772 aa22.41■■□□□ 1.18
USB1-209ENST00000564387 CARMIL3Q8ND23 1372 aa22.4■■□□□ 1.18
USB1-209ENST00000564387 ANXA1P04083 346 aa22.4■■□□□ 1.18
USB1-209ENST00000564387 TGFB2P61812 414 aa22.4■■□□□ 1.18
USB1-209ENST00000564387 HLFQ16534 295 aa22.4■■□□□ 1.18
USB1-209ENST00000564387 KLHL34Q8N239 644 aa22.4■■□□□ 1.18
USB1-209ENST00000564387 NECTIN2Q92692 538 aa22.4■■□□□ 1.18
USB1-209ENST00000564387 NUP98P52948 1817 aa22.39■■□□□ 1.17
USB1-209ENST00000564387 ELL2O00472 640 aaPredicted RBP22.39■■□□□ 1.17
USB1-209ENST00000564387 SETDB2Q96T68 719 aa22.39■■□□□ 1.17
USB1-209ENST00000564387 PXDNLA1KZ92 1463 aa22.39■■□□□ 1.17
USB1-209ENST00000564387 ATP10DQ9P241 1426 aa22.39■■□□□ 1.17
USB1-209ENST00000564387 KIF6Q6ZMV9 814 aa22.38■■□□□ 1.17
USB1-209ENST00000564387 COPS6Q7L5N1 327 aa22.38■■□□□ 1.17
USB1-209ENST00000564387 HYPKQ9NX55 129 aa22.38■■□□□ 1.17
USB1-209ENST00000564387 GOLGA2Q08379 1002 aa22.37■■□□□ 1.17
USB1-209ENST00000564387 GIGYF2Q6Y7W6 1299 aaKnown RBP22.37■■□□□ 1.17
USB1-209ENST00000564387 BICDL1Q6ZP65 573 aa22.37■■□□□ 1.17
USB1-209ENST00000564387 XAGE3Q8WTP9 111 aa22.37■■□□□ 1.17
USB1-209ENST00000564387 MYH16Q9H6N6 1097 aa22.37■■□□□ 1.17
USB1-209ENST00000564387 GOLGB1Q14789 3259 aaKnown RBP22.37■■□□□ 1.17
USB1-209ENST00000564387 TWISTNBQ3B726 338 aaPredicted RBP22.36■■□□□ 1.17
USB1-209ENST00000564387 CCDC30Q5VVM6 783 aa22.36■■□□□ 1.17
USB1-209ENST00000564387 KCNA3P22001 575 aa22.35■■□□□ 1.17
USB1-209ENST00000564387 ZNF34Q8IZ26 560 aa22.35■■□□□ 1.17
USB1-209ENST00000564387 VAMP4O75379 141 aa22.34■■□□□ 1.17
USB1-209ENST00000564387 PRR5LQ6MZQ0 368 aa22.34■■□□□ 1.17
USB1-209ENST00000564387 ZBTB3Q9H5J0 574 aa22.34■■□□□ 1.17
USB1-209ENST00000564387 NIP7Q9Y221 180 aaKnown RBP eCLIP22.34■■□□□ 1.17
USB1-209ENST00000564387 EXOSC9Q06265 439 aaKnown RBP22.33■■□□□ 1.17
USB1-209ENST00000564387 E9PSI1 815 aa22.32■■□□□ 1.16
USB1-209ENST00000564387 SLFN5Q08AF3 891 aa22.32■■□□□ 1.16
USB1-209ENST00000564387 TRMT2AQ8IZ69 625 aaKnown RBP22.32■■□□□ 1.16
USB1-209ENST00000564387 PLBD2Q8NHP8 589 aa22.32■■□□□ 1.16
USB1-209ENST00000564387 BRIP1Q9BX63 1249 aa22.32■■□□□ 1.16
USB1-209ENST00000564387 IBTKQ9P2D0 1353 aaPredicted RBP22.32■■□□□ 1.16
USB1-209ENST00000564387 N4BP2Q86UW6 1770 aaPredicted RBP22.32■■□□□ 1.16
USB1-209ENST00000564387 BRCA1P38398 1863 aaKnown RBP22.32■■□□□ 1.16
USB1-209ENST00000564387 ANKRD31Q8N7Z5 1873 aa22.31■■□□□ 1.16
USB1-209ENST00000564387 DPEP1P16444 411 aa22.31■■□□□ 1.16
USB1-209ENST00000564387 AIMP1Q12904 312 aaKnown RBP22.31■■□□□ 1.16
USB1-209ENST00000564387 ANKRD13DQ6ZTN6 518 aa22.31■■□□□ 1.16
USB1-209ENST00000564387 UBN2Q6ZU65 1347 aa22.31■■□□□ 1.16
USB1-209ENST00000564387 A0A0G2JLW4 131 aa22.3■■□□□ 1.16
USB1-209ENST00000564387 DCAF8L1A6NGE4 600 aa22.3■■□□□ 1.16
USB1-209ENST00000564387 TPTE2Q6XPS3 522 aa22.3■■□□□ 1.16
USB1-209ENST00000564387 CNBD1Q8NA66 436 aa22.3■■□□□ 1.16
USB1-209ENST00000564387 PHAXQ9H814 394 aaKnown RBP22.3■■□□□ 1.16
USB1-209ENST00000564387 UTRNP46939 3433 aa22.3■■□□□ 1.16
USB1-209ENST00000564387 YBX3P16989 372 aaKnown RBP eCLIP22.29■■□□□ 1.16
USB1-209ENST00000564387 TCIRG1Q13488 830 aa22.29■■□□□ 1.16
USB1-209ENST00000564387 HSP90AB3PQ58FF7 597 aa22.29■■□□□ 1.16
USB1-209ENST00000564387 NBPF5PQ86XG9 351 aaPredicted RBP22.29■■□□□ 1.16
USB1-209ENST00000564387 PDZRN3Q9UPQ7 1066 aa22.29■■□□□ 1.16
USB1-209ENST00000564387 ANKRD36CQ5JPF3 1778 aa22.29■■□□□ 1.16
USB1-209ENST00000564387 KLRG2A4D1S0 409 aaPredicted RBP22.28■■□□□ 1.16
USB1-209ENST00000564387 PARP10Q53GL7 1025 aa22.28■■□□□ 1.16
USB1-209ENST00000564387 CACNA1FO60840 1977 aa22.28■■□□□ 1.16
USB1-209ENST00000564387 DLEC1Q9Y238 1755 aa22.27■■□□□ 1.16
USB1-209ENST00000564387 GPR162Q16538 588 aa22.27■■□□□ 1.16
USB1-209ENST00000564387 NYXQ9GZU5 481 aa22.27■■□□□ 1.16
USB1-209ENST00000564387 RIC1Q4ADV7 1423 aa22.26■■□□□ 1.15
USB1-209ENST00000564387 CHRNA5P30532 468 aa22.26■■□□□ 1.15
USB1-209ENST00000564387 PDE6BP35913 854 aa22.26■■□□□ 1.15
USB1-209ENST00000564387 ST5P78524 1137 aa22.26■■□□□ 1.15
USB1-209ENST00000564387 SUSD4Q5VX71 490 aa22.26■■□□□ 1.15
USB1-209ENST00000564387 CDCA7LQ96GN5 454 aa22.26■■□□□ 1.15
USB1-209ENST00000564387 ISCA1Q9BUE6 129 aa22.26■■□□□ 1.15
USB1-209ENST00000564387 STK31Q9BXU1 1019 aa22.26■■□□□ 1.15
USB1-209ENST00000564387 NTSR2O95665 410 aa22.25■■□□□ 1.15
USB1-209ENST00000564387 GPTP24298 496 aa22.25■■□□□ 1.15
USB1-209ENST00000564387 TRIM28Q13263 835 aaKnown RBP22.25■■□□□ 1.15
USB1-209ENST00000564387 PIM2Q9P1W9 311 aa22.25■■□□□ 1.15
USB1-209ENST00000564387 ARFGEF2Q9Y6D5 1785 aa22.25■■□□□ 1.15
USB1-209ENST00000564387 GRIN3BO60391 1043 aa22.24■■□□□ 1.15
USB1-209ENST00000564387 SLC4A2P04920 1241 aa22.24■■□□□ 1.15
USB1-209ENST00000564387 NLRP10Q86W26 655 aa22.24■■□□□ 1.15
USB1-209ENST00000564387 RNF123Q5XPI4 1314 aa22.24■■□□□ 1.15
USB1-209ENST00000564387 PPP1R42Q7Z4L9 355 aa22.23■■□□□ 1.15
USB1-209ENST00000564387 CCDC24Q8N4L8 307 aa22.23■■□□□ 1.15
USB1-209ENST00000564387 H0YIN7 160 aa22.22■■□□□ 1.15
USB1-209ENST00000564387 TCERG1O14776 1098 aaKnown RBP22.22■■□□□ 1.15
USB1-209ENST00000564387 SLC10A5Q5PT55 438 aa22.22■■□□□ 1.15
USB1-209ENST00000564387 G2E3Q7L622 706 aa22.22■■□□□ 1.15
USB1-209ENST00000564387 C2CD5Q86YS7 1000 aa22.22■■□□□ 1.15
USB1-209ENST00000564387 COL11A2P13942 1736 aaPredicted RBP22.22■■□□□ 1.15
USB1-209ENST00000564387 DDX58O95786 925 aaKnown RBP22.21■■□□□ 1.15
USB1-209ENST00000564387 SRGNP10124 158 aa22.21■■□□□ 1.15
USB1-209ENST00000564387 ERFEQ4G0M1 354 aa22.21■■□□□ 1.15
USB1-209ENST00000564387 KSR2Q6VAB6 950 aa22.21■■□□□ 1.15
USB1-209ENST00000564387 RIC3Q7Z5B4 369 aa22.21■■□□□ 1.15
USB1-209ENST00000564387 ZNF428Q96B54 188 aa22.21■■□□□ 1.15
USB1-209ENST00000564387 UTP14AQ9BVJ6 771 aaKnown RBP22.21■■□□□ 1.15
USB1-209ENST00000564387 ARFGEF1Q9Y6D6 1849 aa22.21■■□□□ 1.15
USB1-209ENST00000564387 ABCC12Q96J65 1359 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms