RNA–Protein interactions for RNA: ENST00000564288.5

MACF1-231, Transcript of microtubule-actin crosslinking factor 1, human

APPRIS ALT2 TSL 5 BASIC

Gene MACF1, Length 24,828 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MACF1-231	ENST00000564288	ZSCAN22	P10073	491 aa	Predicted RBP	4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	CYP2C19	P33261	490 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	RPGRIP1	Q96KN7	1286 aa		4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	C9orf84	Q5VXU9	1444 aa		4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	NEDD9	Q14511	834 aa		4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	TMX3	Q96JJ7	454 aa		4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	ALS2CL	Q60I27	953 aa		4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	SLC52A1	Q9NWF4	448 aa		4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	TOP1	P11387	765 aa	Known RBP	4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	LMNB2	Q03252	620 aa		4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	G3BP1	Q13283	466 aa	Known RBP eCLIP	4.91	□□□□□ -1.62	1e-6	■■□□□ 14
MACF1-231	ENST00000564288	ANO2	Q9NQ90	1003 aa		4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	USO1	O60763	962 aa	Known RBP	4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	SLC3A2	P08195	630 aa	Known RBP	4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	FAM76A	Q8TAV0	307 aa		4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	NUP133	Q8WUM0	1156 aa		4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	ITGB1BP2	Q9UKP3	347 aa		4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	PPFIA1	Q13136	1202 aa		4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	CCT4	P50991	539 aa	Known RBP	4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	MPND	Q8N594	471 aa		4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	IFT74	Q96LB3	600 aa		4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	PTPN23	Q9H3S7	1636 aa		4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	STX6	O43752	255 aa		4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	LARS	Q9P2J5	1176 aa	Known RBP	4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	SRPK2	P78362	688 aa	Known RBP	4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	SWT1	Q5T5J6	900 aa	Known RBP	4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	FKBP5	Q13451	457 aa	Predicted RBP	4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	ZBTB40	Q9NUA8	1239 aa		4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	DDX12P	Q92771	950 aa		4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	DNAI1	Q9UI46	699 aa		4.91	□□□□□ -1.62
MACF1-231	ENST00000564288	CPLX1	O14810	134 aa		4.9	□□□□□ -1.62
MACF1-231	ENST00000564288	ANKRD7	Q92527	254 aa		4.9	□□□□□ -1.62
MACF1-231	ENST00000564288	IQCD	Q96DY2	449 aa		4.9	□□□□□ -1.62
MACF1-231	ENST00000564288	ATP2B1	P20020	1258 aa		4.9	□□□□□ -1.62
MACF1-231	ENST00000564288	TBC1D31	Q96DN5	1066 aa		4.9	□□□□□ -1.62
MACF1-231	ENST00000564288	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	4.9	□□□□□ -1.62
MACF1-231	ENST00000564288	ADAM21	Q9UKJ8	722 aa		4.9	□□□□□ -1.62
MACF1-231	ENST00000564288	CCDC102B	Q68D86	513 aa		4.9	□□□□□ -1.62
MACF1-231	ENST00000564288	DCTPP1	Q9H773	170 aa		4.9	□□□□□ -1.62
MACF1-231	ENST00000564288	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	4.9	□□□□□ -1.62	6e-7	■■■□□ 17.4
MACF1-231	ENST00000564288	PARD3	Q8TEW0	1356 aa		4.9	□□□□□ -1.62
MACF1-231	ENST00000564288	RTEL1-TNFRSF6B	F6WH68	1400 aa		4.9	□□□□□ -1.62
MACF1-231	ENST00000564288	RAD54L2	Q9Y4B4	1467 aa		4.9	□□□□□ -1.62
MACF1-231	ENST00000564288	NAA25	Q14CX7	972 aa		4.9	□□□□□ -1.62
MACF1-231	ENST00000564288	KRT83	P78385	493 aa		4.9	□□□□□ -1.62
MACF1-231	ENST00000564288	FOXD1	Q16676	465 aa		4.9	□□□□□ -1.62
MACF1-231	ENST00000564288	CNTROB	Q8N137	903 aa		4.9	□□□□□ -1.62
MACF1-231	ENST00000564288	STAG1	Q8WVM7	1258 aa		4.9	□□□□□ -1.62
MACF1-231	ENST00000564288	CTIF	O43310	598 aa	Known RBP	4.9	□□□□□ -1.63
MACF1-231	ENST00000564288	CHGA	P10645	457 aa	Known RBP	4.9	□□□□□ -1.63
MACF1-231	ENST00000564288	IFIT2	P09913	472 aa	Known RBP	4.9	□□□□□ -1.63
MACF1-231	ENST00000564288	STMN4	Q9H169	189 aa	Predicted RBP	4.9	□□□□□ -1.63
MACF1-231	ENST00000564288	PSD	A5PKW4	1024 aa	Predicted RBP	4.9	□□□□□ -1.63
MACF1-231	ENST00000564288	CKAP4	Q07065	602 aa	Known RBP	4.9	□□□□□ -1.63
MACF1-231	ENST00000564288	CTAGE1	Q96RT6	745 aa		4.9	□□□□□ -1.63
MACF1-231	ENST00000564288	NUCKS1	Q9H1E3	243 aa	Known RBP	4.9	□□□□□ -1.63
MACF1-231	ENST00000564288	HSF2BP	O75031	334 aa		4.9	□□□□□ -1.63
MACF1-231	ENST00000564288	CCDC158	Q5M9N0	1113 aa		4.9	□□□□□ -1.63
MACF1-231	ENST00000564288	GIMAP6	Q6P9H5	292 aa		4.9	□□□□□ -1.63
MACF1-231	ENST00000564288	SPA17	Q15506	151 aa		4.9	□□□□□ -1.63
MACF1-231	ENST00000564288	RAI14	Q9P0K7	980 aa		4.9	□□□□□ -1.63
MACF1-231	ENST00000564288	UBASH3A	P57075	661 aa		4.9	□□□□□ -1.63
MACF1-231	ENST00000564288	GCC2	Q8IWJ2	1684 aa		4.9	□□□□□ -1.63
MACF1-231	ENST00000564288	ZFY	P08048	801 aa	Predicted RBP	4.9	□□□□□ -1.63
MACF1-231	ENST00000564288	SYT1	P21579	422 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	ARID4A	P29374	1257 aa	Predicted RBP	4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	STX1A	Q16623	288 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	RTL1	A6NKG5	1358 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	UGGT2	Q9NYU1	1516 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	LUC7L3	O95232	432 aa	Known RBP	4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	ZSCAN25	Q6NSZ9	544 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	CCDC175	P0C221	793 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	PTPRG	P23470	1445 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	MYO1C	O00159	1063 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	FGFR1OP	O95684	399 aa	Known RBP	4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	TRH	P20396	242 aa	Predicted RBP	4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	MTHFS	P49914	203 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	ATP10A	O60312	1499 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	ARAP3	Q8WWN8	1544 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	WDR66	Q8TBY9	1149 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	LMBR1	Q8WVP7	490 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	ME1	P48163	572 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	RWDD2B	P57060	319 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	CAMK4	Q16566	473 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	LRRC8A	Q8IWT6	810 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	PPFIA4	O75335	1185 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	CRYM	Q14894	314 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	LMNTD2	Q8IXW0	634 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	RRP15	Q9Y3B9	282 aa	Known RBP	4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	PPFIA2	O75334	1257 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	FEZ2	Q9UHY8	353 aa	Predicted RBP	4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	CEP104	O60308	925 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	CLNS1A	P54105	237 aa	Known RBP	4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	BUB1B	O60566	1050 aa	Predicted RBP	4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	CLASRP	Q8N2M8	674 aa	Known RBP	4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	ODF2L	Q9ULJ1	636 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	TTC36	A6NLP5	189 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	P3H4	Q92791	437 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	TUBB6	Q9BUF5	446 aa		4.89	□□□□□ -1.63
MACF1-231	ENST00000564288	SPATA24	Q86W54	205 aa		4.89	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms