RNA–Protein interactions for RNA: ENST00000564247.1

CMTM3-208, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2

Gene CMTM3, Length 1,127 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-208ENST00000564247 PRAMEF22A3QJZ6 481 aa21.65■■□□□ 1.06
CMTM3-208ENST00000564247 TCERG1O14776 1098 aaKnown RBP21.65■■□□□ 1.06
CMTM3-208ENST00000564247 SLC4A2P04920 1241 aa21.65■■□□□ 1.06
CMTM3-208ENST00000564247 BCL2L13Q9BXK5 485 aa21.65■■□□□ 1.06
CMTM3-208ENST00000564247 C10orf71Q711Q0 1435 aa21.64■■□□□ 1.06
CMTM3-208ENST00000564247 A1BGP04217 495 aa21.64■■□□□ 1.05
CMTM3-208ENST00000564247 TM4SF1P30408 202 aa21.64■■□□□ 1.05
CMTM3-208ENST00000564247 PELP1Q8IZL8 1130 aaKnown RBP21.64■■□□□ 1.05
CMTM3-208ENST00000564247 MRPL50Q8N5N7 158 aaKnown RBP21.64■■□□□ 1.05
CMTM3-208ENST00000564247 DBF4Q9UBU7 674 aaPredicted RBP21.64■■□□□ 1.05
CMTM3-208ENST00000564247 IPO8O15397 1037 aaKnown RBP21.63■■□□□ 1.05
CMTM3-208ENST00000564247 YY1P25490 414 aa21.63■■□□□ 1.05
CMTM3-208ENST00000564247 BRPF1P55201 1214 aaPredicted RBP21.63■■□□□ 1.05
CMTM3-208ENST00000564247 LAMB4A4D0S4 1761 aa21.63■■□□□ 1.05
CMTM3-208ENST00000564247 KIAA1551Q9HCM1 1747 aa21.63■■□□□ 1.05
CMTM3-208ENST00000564247 CACNA1FO60840 1977 aa21.63■■□□□ 1.05
CMTM3-208ENST00000564247 DDR1Q08345 913 aa21.62■■□□□ 1.05
CMTM3-208ENST00000564247 BCL2L12Q9HB09 334 aa21.62■■□□□ 1.05
CMTM3-208ENST00000564247 KIF16BQ96L93 1317 aa21.61■■□□□ 1.05
CMTM3-208ENST00000564247 SCN7AQ01118 1682 aa21.61■■□□□ 1.05
CMTM3-208ENST00000564247 YBX3P16989 372 aaKnown RBP eCLIP21.61■■□□□ 1.051e-6■■□□□ 12.5
CMTM3-208ENST00000564247 TGFB2P61812 414 aa21.61■■□□□ 1.05
CMTM3-208ENST00000564247 FRAT1Q92837 279 aaPredicted RBP21.61■■□□□ 1.05
CMTM3-208ENST00000564247 HYPKQ9NX55 129 aa21.61■■□□□ 1.05
CMTM3-208ENST00000564247 ERBB4Q15303 1308 aa21.6■■□□□ 1.05
CMTM3-208ENST00000564247 POLRMTO00411 1230 aaKnown RBP21.6■■□□□ 1.05
CMTM3-208ENST00000564247 GRIN3BO60391 1043 aa21.6■■□□□ 1.05
CMTM3-208ENST00000564247 NPM2Q86SE8 214 aaKnown RBP21.6■■□□□ 1.05
CMTM3-208ENST00000564247 DDX21Q9NR30 783 aaKnown RBP eCLIP21.6■■□□□ 1.05
CMTM3-208ENST00000564247 CHPF2Q9P2E5 772 aa21.6■■□□□ 1.05
CMTM3-208ENST00000564247 AFDNP55196 1824 aaKnown RBP21.59■■□□□ 1.05
CMTM3-208ENST00000564247 PXDNLA1KZ92 1463 aa21.59■■□□□ 1.05
CMTM3-208ENST00000564247 N4BP2Q86UW6 1770 aaPredicted RBP21.59■■□□□ 1.05
CMTM3-208ENST00000564247 RRP1P56182 461 aaKnown RBP21.59■■□□□ 1.05
CMTM3-208ENST00000564247 NFIXQ14938 502 aa21.59■■□□□ 1.05
CMTM3-208ENST00000564247 NOB1Q9ULX3 412 aaKnown RBP21.59■■□□□ 1.05
CMTM3-208ENST00000564247 ZNF330Q9Y3S2 320 aaPredicted RBP21.59■■□□□ 1.05
CMTM3-208ENST00000564247 NRXN2Q9P2S2 1712 aa21.58■■□□□ 1.05
CMTM3-208ENST00000564247 MS4A1P11836 297 aa21.58■■□□□ 1.05
CMTM3-208ENST00000564247 ZKSCAN2Q63HK3 967 aa21.58■■□□□ 1.05
CMTM3-208ENST00000564247 TBC1D2BQ9UPU7 963 aa21.58■■□□□ 1.05
CMTM3-208ENST00000564247 BCORQ6W2J9 1755 aa21.57■■□□□ 1.04
CMTM3-208ENST00000564247 MYL6BP14649 208 aa21.57■■□□□ 1.04
CMTM3-208ENST00000564247 ARHGAP45Q92619 1136 aa21.57■■□□□ 1.04
CMTM3-208ENST00000564247 RNF123Q5XPI4 1314 aa21.56■■□□□ 1.04
CMTM3-208ENST00000564247 NBPF26B4DH59 902 aa21.56■■□□□ 1.04
CMTM3-208ENST00000564247 PIP4K2AP48426 406 aaPredicted RBP21.56■■□□□ 1.04
CMTM3-208ENST00000564247 NBPF10Q6P3W6 841 aaKnown RBP21.56■■□□□ 1.04
CMTM3-208ENST00000564247 NBPF15Q8N660 670 aa21.56■■□□□ 1.04
CMTM3-208ENST00000564247 BRCA1P38398 1863 aaKnown RBP21.56■■□□□ 1.04
CMTM3-208ENST00000564247 PTPRCP08575 1304 aa21.55■■□□□ 1.04
CMTM3-208ENST00000564247 CAMTA2O94983 1202 aa21.55■■□□□ 1.04
CMTM3-208ENST00000564247 NEFLP07196 543 aa21.55■■□□□ 1.04
CMTM3-208ENST00000564247 PDIA6Q15084 440 aa21.55■■□□□ 1.04
CMTM3-208ENST00000564247 DZIP3Q86Y13 1208 aaKnown RBP21.55■■□□□ 1.04
CMTM3-208ENST00000564247 API5Q9BZZ5 524 aaKnown RBP21.55■■□□□ 1.04
CMTM3-208ENST00000564247 A0A0G2JLW4 131 aa21.54■■□□□ 1.04
CMTM3-208ENST00000564247 PLIN1O60240 522 aa21.54■■□□□ 1.04
CMTM3-208ENST00000564247 ANXA1P04083 346 aa21.54■■□□□ 1.04
CMTM3-208ENST00000564247 SERPINB2P05120 415 aa21.54■■□□□ 1.04
CMTM3-208ENST00000564247 FLIIQ13045 1269 aa21.54■■□□□ 1.04
CMTM3-208ENST00000564247 G2E3Q7L622 706 aa21.54■■□□□ 1.04
CMTM3-208ENST00000564247 DPEP1P16444 411 aa21.53■■□□□ 1.04
CMTM3-208ENST00000564247 TBC1D9BQ66K14 1250 aa21.53■■□□□ 1.04
CMTM3-208ENST00000564247 ATF7IPQ6VMQ6 1270 aa21.53■■□□□ 1.04
CMTM3-208ENST00000564247 PHAXQ9H814 394 aaKnown RBP21.53■■□□□ 1.04
CMTM3-208ENST00000564247 DDX58O95786 925 aaKnown RBP21.52■■□□□ 1.04
CMTM3-208ENST00000564247 FKBP5Q13451 457 aaPredicted RBP21.52■■□□□ 1.04
CMTM3-208ENST00000564247 PROSER3Q2NL68 480 aa21.52■■□□□ 1.04
CMTM3-208ENST00000564247 RGL2O15211 777 aa21.51■■□□□ 1.03
CMTM3-208ENST00000564247 KCNA3P22001 575 aa21.51■■□□□ 1.03
CMTM3-208ENST00000564247 AIMP1Q12904 312 aaKnown RBP21.51■■□□□ 1.03
CMTM3-208ENST00000564247 PDE3AQ14432 1141 aa21.51■■□□□ 1.03
CMTM3-208ENST00000564247 CLEC4GQ6UXB4 293 aa21.51■■□□□ 1.03
CMTM3-208ENST00000564247 BICDL1Q6ZP65 573 aa21.51■■□□□ 1.03
CMTM3-208ENST00000564247 FTSJ3Q8IY81 847 aaKnown RBP21.51■■□□□ 1.03
CMTM3-208ENST00000564247 WWC3Q9ULE0 1092 aa21.51■■□□□ 1.03
CMTM3-208ENST00000564247 CARMIL3Q8ND23 1372 aa21.5■■□□□ 1.03
CMTM3-208ENST00000564247 COPS6Q7L5N1 327 aa21.5■■□□□ 1.03
CMTM3-208ENST00000564247 XAGE3Q8WTP9 111 aa21.5■■□□□ 1.03
CMTM3-208ENST00000564247 DZIP1LQ8IYY4 767 aaKnown RBP21.49■■□□□ 1.03
CMTM3-208ENST00000564247 ZNF652Q9Y2D9 606 aa21.49■■□□□ 1.03
CMTM3-208ENST00000564247 TRIM27P14373 513 aa21.48■■□□□ 1.03
CMTM3-208ENST00000564247 SETDB2Q96T68 719 aa21.48■■□□□ 1.03
CMTM3-208ENST00000564247 ARFGEF1Q9Y6D6 1849 aa21.48■■□□□ 1.03
CMTM3-208ENST00000564247 KSR2Q6VAB6 950 aa21.47■■□□□ 1.03
CMTM3-208ENST00000564247 LRP10Q7Z4F1 713 aa21.47■■□□□ 1.03
CMTM3-208ENST00000564247 RIC3Q7Z5B4 369 aa21.47■■□□□ 1.03
CMTM3-208ENST00000564247 CLUAP1Q96AJ1 413 aa21.47■■□□□ 1.03
CMTM3-208ENST00000564247 PIM2Q9P1W9 311 aa21.47■■□□□ 1.03
CMTM3-208ENST00000564247 BCS1LQ9Y276 419 aa21.47■■□□□ 1.03
CMTM3-208ENST00000564247 DLEC1Q9Y238 1755 aa21.46■■□□□ 1.03
CMTM3-208ENST00000564247 CHRNA5P30532 468 aa21.46■■□□□ 1.03
CMTM3-208ENST00000564247 KIF6Q6ZMV9 814 aa21.46■■□□□ 1.03
CMTM3-208ENST00000564247 ANKRD13DQ6ZTN6 518 aa21.46■■□□□ 1.03
CMTM3-208ENST00000564247 ANKRD31Q8N7Z5 1873 aa21.45■■□□□ 1.02
CMTM3-208ENST00000564247 PI4KAP2A4QPH2 592 aa21.45■■□□□ 1.02
CMTM3-208ENST00000564247 PI4KAP1Q8N8J0 262 aa21.45■■□□□ 1.02
CMTM3-208ENST00000564247 NUP98P52948 1817 aa21.44■■□□□ 1.02
CMTM3-208ENST00000564247 PRR5LQ6MZQ0 368 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms