RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 SRGNP10124 158 aa22.74■■□□□ 1.23
VPS9D1-203ENST00000563798 RASSF7Q02833 373 aa22.74■■□□□ 1.23
VPS9D1-203ENST00000563798 STYK1Q6J9G0 422 aa22.74■■□□□ 1.23
VPS9D1-203ENST00000563798 CCDC24Q8N4L8 307 aa22.74■■□□□ 1.23
VPS9D1-203ENST00000563798 KLRG2A4D1S0 409 aaPredicted RBP22.73■■□□□ 1.23
VPS9D1-203ENST00000563798 ZNF622Q969S3 477 aaKnown RBP eCLIP22.73■■□□□ 1.23
VPS9D1-203ENST00000563798 THUMPD2Q9BTF0 503 aaKnown RBP22.73■■□□□ 1.23
VPS9D1-203ENST00000563798 DDX10Q13206 875 aaKnown RBP22.72■■□□□ 1.23
VPS9D1-203ENST00000563798 NBPF5PQ86XG9 351 aaPredicted RBP22.72■■□□□ 1.23
VPS9D1-203ENST00000563798 RBM46Q8TBY0 533 aaKnown RBP22.72■■□□□ 1.23
VPS9D1-203ENST00000563798 CNKSR1Q969H4 720 aa22.72■■□□□ 1.23
VPS9D1-203ENST00000563798 MYBBP1AQ9BQG0 1328 aaKnown RBP22.72■■□□□ 1.23
VPS9D1-203ENST00000563798 ERVV-1B6SEH8 477 aa22.71■■□□□ 1.23
VPS9D1-203ENST00000563798 TPTE2Q6XPS3 522 aa22.71■■□□□ 1.23
VPS9D1-203ENST00000563798 MASTLQ96GX5 879 aa22.71■■□□□ 1.23
VPS9D1-203ENST00000563798 BABAM1Q9NWV8 329 aa22.71■■□□□ 1.23
VPS9D1-203ENST00000563798 NPHP1O15259 732 aa22.7■■□□□ 1.22
VPS9D1-203ENST00000563798 IFFO2Q5TF58 517 aa22.7■■□□□ 1.22
VPS9D1-203ENST00000563798 NIP7Q9Y221 180 aaKnown RBP eCLIP22.7■■□□□ 1.22
VPS9D1-203ENST00000563798 LTBP3Q9NS15 1303 aa22.7■■□□□ 1.22
VPS9D1-203ENST00000563798 TNRC6CQ9HCJ0 1690 aaKnown RBP22.69■■□□□ 1.22
VPS9D1-203ENST00000563798 ERBB4Q15303 1308 aa22.69■■□□□ 1.22
VPS9D1-203ENST00000563798 C21orf2O43822 256 aa22.69■■□□□ 1.22
VPS9D1-203ENST00000563798 HLFQ16534 295 aa22.69■■□□□ 1.22
VPS9D1-203ENST00000563798 GLTPD2A6NH11 291 aa22.68■■□□□ 1.22
VPS9D1-203ENST00000563798 TMPOP42166 694 aaKnown RBP22.68■■□□□ 1.22
VPS9D1-203ENST00000563798 RIPK4P57078 832 aa22.68■■□□□ 1.22
VPS9D1-203ENST00000563798 FER1L6Q2WGJ9 1857 aa22.68■■□□□ 1.22
VPS9D1-203ENST00000563798 ARFGEF2Q9Y6D5 1785 aa22.68■■□□□ 1.22
VPS9D1-203ENST00000563798 LMOD3Q0VAK6 560 aa22.67■■□□□ 1.22
VPS9D1-203ENST00000563798 SOGA3Q5TF21 947 aa22.67■■□□□ 1.22
VPS9D1-203ENST00000563798 PRPF40BQ6NWY9 871 aaKnown RBP22.67■■□□□ 1.22
VPS9D1-203ENST00000563798 RRAGCQ9HB90 399 aa22.67■■□□□ 1.22
VPS9D1-203ENST00000563798 MAP3K15Q6ZN16 1313 aa22.66■■□□□ 1.22
VPS9D1-203ENST00000563798 NPR1P16066 1061 aa22.66■■□□□ 1.22
VPS9D1-203ENST00000563798 APLP1P51693 650 aa22.66■■□□□ 1.22
VPS9D1-203ENST00000563798 FSTL1Q12841 308 aa22.66■■□□□ 1.22
VPS9D1-203ENST00000563798 C7orf43Q8WVR3 580 aa22.66■■□□□ 1.22
VPS9D1-203ENST00000563798 SLX4Q8IY92 1834 aa22.66■■□□□ 1.22
VPS9D1-203ENST00000563798 C16orf71Q8IYS4 520 aaPredicted RBP22.65■■□□□ 1.22
VPS9D1-203ENST00000563798 TSPYL4Q9UJ04 414 aa22.65■■□□□ 1.22
VPS9D1-203ENST00000563798 TTLL7Q6ZT98 887 aa22.64■■□□□ 1.21
VPS9D1-203ENST00000563798 TAOK3Q9H2K8 898 aa22.64■■□□□ 1.21
VPS9D1-203ENST00000563798 RRP7AQ9Y3A4 280 aaKnown RBP22.64■■□□□ 1.21
VPS9D1-203ENST00000563798 TIAM2Q8IVF5 1701 aa22.63■■□□□ 1.21
VPS9D1-203ENST00000563798 CCDC88AQ3V6T2 1871 aa22.63■■□□□ 1.21
VPS9D1-203ENST00000563798 LRP10Q7Z4F1 713 aa22.63■■□□□ 1.21
VPS9D1-203ENST00000563798 IBTKQ9P2D0 1353 aaPredicted RBP22.63■■□□□ 1.21
VPS9D1-203ENST00000563798 VEGFAP15692 232 aaPredicted RBP22.62■■□□□ 1.21
VPS9D1-203ENST00000563798 KIF6Q6ZMV9 814 aa22.62■■□□□ 1.21
VPS9D1-203ENST00000563798 NYXQ9GZU5 481 aa22.62■■□□□ 1.21
VPS9D1-203ENST00000563798 ZNF219Q9P2Y4 722 aaPredicted RBP22.62■■□□□ 1.21
VPS9D1-203ENST00000563798 RIC1Q4ADV7 1423 aa22.62■■□□□ 1.21
VPS9D1-203ENST00000563798 DICER1Q9UPY3 1922 aaKnown RBP22.62■■□□□ 1.21
VPS9D1-203ENST00000563798 PDIA6Q15084 440 aa22.61■■□□□ 1.21
VPS9D1-203ENST00000563798 CRY2Q49AN0 593 aa22.61■■□□□ 1.21
VPS9D1-203ENST00000563798 NGEFQ8N5V2 710 aa22.61■■□□□ 1.21
VPS9D1-203ENST00000563798 RUNDC1Q96C34 613 aa22.61■■□□□ 1.21
VPS9D1-203ENST00000563798 NUP98P52948 1817 aa22.61■■□□□ 1.21
VPS9D1-203ENST00000563798 MYL6BP14649 208 aa22.6■■□□□ 1.21
VPS9D1-203ENST00000563798 ERFEQ4G0M1 354 aa22.6■■□□□ 1.21
VPS9D1-203ENST00000563798 DPY19L2Q6NUT2 758 aa22.6■■□□□ 1.21
VPS9D1-203ENST00000563798 ZNF34Q8IZ26 560 aa22.6■■□□□ 1.21
VPS9D1-203ENST00000563798 CHL1O00533 1208 aa22.59■■□□□ 1.21
VPS9D1-203ENST00000563798 ALDH1B1P30837 517 aa22.59■■□□□ 1.21
VPS9D1-203ENST00000563798 CCDC93Q567U6 631 aa22.59■■□□□ 1.21
VPS9D1-203ENST00000563798 GIGYF2Q6Y7W6 1299 aaKnown RBP22.59■■□□□ 1.21
VPS9D1-203ENST00000563798 DNAJC5GQ8N7S2 189 aa22.59■■□□□ 1.21
VPS9D1-203ENST00000563798 PRKRIP1Q9H875 184 aaPredicted RBP22.59■■□□□ 1.21
VPS9D1-203ENST00000563798 WDR90Q96KV7 1748 aa22.59■■□□□ 1.21
VPS9D1-203ENST00000563798 FAM177BA6PVY3 158 aa22.58■■□□□ 1.21
VPS9D1-203ENST00000563798 POTECB2RU33 542 aa22.58■■□□□ 1.21
VPS9D1-203ENST00000563798 GTF2E1P29083 439 aaPredicted RBP22.58■■□□□ 1.21
VPS9D1-203ENST00000563798 SMC1BQ8NDV3 1235 aa22.58■■□□□ 1.21
VPS9D1-203ENST00000563798 TRIM35Q9UPQ4 493 aa22.58■■□□□ 1.21
VPS9D1-203ENST00000563798 UBN2Q6ZU65 1347 aa22.57■■□□□ 1.2
VPS9D1-203ENST00000563798 WDR43Q15061 677 aaKnown RBP eCLIP22.57■■□□□ 1.2
VPS9D1-203ENST00000563798 CCDC146Q8IYE0 955 aa22.57■■□□□ 1.2
VPS9D1-203ENST00000563798 ZBTB3Q9H5J0 574 aa22.57■■□□□ 1.2
VPS9D1-203ENST00000563798 ADAMTS8Q9UP79 889 aa22.57■■□□□ 1.2
VPS9D1-203ENST00000563798 ABCC12Q96J65 1359 aa22.57■■□□□ 1.2
VPS9D1-203ENST00000563798 CACNA1SQ13698 1873 aa22.56■■□□□ 1.2
VPS9D1-203ENST00000563798 SUSD4Q5VX71 490 aa22.56■■□□□ 1.2
VPS9D1-203ENST00000563798 RTKN2Q8IZC4 609 aa22.56■■□□□ 1.2
VPS9D1-203ENST00000563798 HOXA10P31260 410 aaPredicted RBP22.55■■□□□ 1.2
VPS9D1-203ENST00000563798 FKBP4Q02790 459 aaKnown RBP eCLIP22.55■■□□□ 1.24e-8■■■■■ 28.9
VPS9D1-203ENST00000563798 NUTM1Q86Y26 1132 aa22.55■■□□□ 1.2
VPS9D1-203ENST00000563798 NTSR2O95665 410 aa22.54■■□□□ 1.2
VPS9D1-203ENST00000563798 EIF2S2P20042 333 aaKnown RBP22.54■■□□□ 1.2
VPS9D1-203ENST00000563798 PARP10Q53GL7 1025 aa22.54■■□□□ 1.2
VPS9D1-203ENST00000563798 SNED1Q8TER0 1413 aa22.54■■□□□ 1.2
VPS9D1-203ENST00000563798 GPTP24298 496 aa22.53■■□□□ 1.2
VPS9D1-203ENST00000563798 NEUROD2Q15784 382 aa22.53■■□□□ 1.2
VPS9D1-203ENST00000563798 PROSER3Q2NL68 480 aa22.53■■□□□ 1.2
VPS9D1-203ENST00000563798 CC2D2BQ6DHV5 1058 aa22.52■■□□□ 1.2
VPS9D1-203ENST00000563798 PPP1R42Q7Z4L9 355 aa22.52■■□□□ 1.2
VPS9D1-203ENST00000563798 HOXB7P09629 217 aa22.51■■□□□ 1.19
VPS9D1-203ENST00000563798 SLC10A5Q5PT55 438 aa22.51■■□□□ 1.19
VPS9D1-203ENST00000563798 DDX21Q9NR30 783 aaKnown RBP eCLIP22.51■■□□□ 1.19
VPS9D1-203ENST00000563798 RNF123Q5XPI4 1314 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms