RNA–Protein interactions for RNA: ENST00000563455.1

SMPD3-205, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-205ENST00000563455 SRCIN1Q9C0H9 1055 aa17.34■□□□□ 0.37
SMPD3-205ENST00000563455 CD2APQ9Y5K6 639 aa17.34■□□□□ 0.37
SMPD3-205ENST00000563455 ATP10DQ9P241 1426 aa17.33■□□□□ 0.36
SMPD3-205ENST00000563455 GNAI2P04899 355 aa17.33■□□□□ 0.36
SMPD3-205ENST00000563455 KSR2Q6VAB6 950 aa17.33■□□□□ 0.36
SMPD3-205ENST00000563455 G2E3Q7L622 706 aa17.33■□□□□ 0.36
SMPD3-205ENST00000563455 CHPF2Q9P2E5 772 aa17.33■□□□□ 0.36
SMPD3-205ENST00000563455 ZBTB47Q9UFB7 747 aaPredicted RBP17.33■□□□□ 0.36
SMPD3-205ENST00000563455 LOC102724428A0A0B4J2F2 783 aa17.32■□□□□ 0.36
SMPD3-205ENST00000563455 KCNQ3O43525 872 aa17.32■□□□□ 0.36
SMPD3-205ENST00000563455 SSFA2P28290 1259 aa17.32■□□□□ 0.36
SMPD3-205ENST00000563455 SIK1P57059 783 aa17.32■□□□□ 0.36
SMPD3-205ENST00000563455 SLC4A10Q6U841 1118 aa17.32■□□□□ 0.36
SMPD3-205ENST00000563455 ANKRD44Q8N8A2 993 aa17.32■□□□□ 0.36
SMPD3-205ENST00000563455 DNAAF4Q8WXU2 420 aa17.32■□□□□ 0.36
SMPD3-205ENST00000563455 DOT1LQ8TEK3 1739 aa17.32■□□□□ 0.36
SMPD3-205ENST00000563455 ZNF496Q96IT1 587 aaPredicted RBP17.31■□□□□ 0.36
SMPD3-205ENST00000563455 ATP6V1AP38606 617 aa17.3■□□□□ 0.36
SMPD3-205ENST00000563455 RBM19Q9Y4C8 960 aaKnown RBP17.3■□□□□ 0.36
SMPD3-205ENST00000563455 LY75O60449 1722 aa17.3■□□□□ 0.36
SMPD3-205ENST00000563455 QSER1Q2KHR3 1735 aa17.3■□□□□ 0.36
SMPD3-205ENST00000563455 NUCB1Q02818 461 aa17.29■□□□□ 0.36
SMPD3-205ENST00000563455 NEXNQ0ZGT2 675 aa17.29■□□□□ 0.36
SMPD3-205ENST00000563455 FAM161AQ3B820 660 aa17.29■□□□□ 0.36
SMPD3-205ENST00000563455 DCTPP1Q9H773 170 aa17.29■□□□□ 0.36
SMPD3-205ENST00000563455 PDZRN3Q9UPQ7 1066 aa17.29■□□□□ 0.36
SMPD3-205ENST00000563455 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.28■□□□□ 0.36
SMPD3-205ENST00000563455 UBTFL1P0CB47 393 aaPredicted RBP17.28■□□□□ 0.36
SMPD3-205ENST00000563455 PDE4AP27815 886 aa17.28■□□□□ 0.36
SMPD3-205ENST00000563455 MSL1Q68DK7 614 aa17.28■□□□□ 0.36
SMPD3-205ENST00000563455 LINS1Q8NG48 757 aa17.28■□□□□ 0.36
SMPD3-205ENST00000563455 BACH2Q9BYV9 841 aa17.28■□□□□ 0.36
SMPD3-205ENST00000563455 PI4KAP2A4QPH2 592 aa17.27■□□□□ 0.36
SMPD3-205ENST00000563455 SLC39A6Q13433 755 aa17.27■□□□□ 0.36
SMPD3-205ENST00000563455 PI4KAP1Q8N8J0 262 aa17.27■□□□□ 0.36
SMPD3-205ENST00000563455 NLGN2Q8NFZ4 835 aa17.27■□□□□ 0.36
SMPD3-205ENST00000563455 NECTIN2Q92692 538 aa17.27■□□□□ 0.36
SMPD3-205ENST00000563455 PHAXQ9H814 394 aaKnown RBP17.27■□□□□ 0.36
SMPD3-205ENST00000563455 ASAP1Q9ULH1 1129 aa17.27■□□□□ 0.36
SMPD3-205ENST00000563455 F6X3S4 739 aa17.26■□□□□ 0.35
SMPD3-205ENST00000563455 PHF14O94880 888 aa17.26■□□□□ 0.35
SMPD3-205ENST00000563455 BEND3Q5T5X7 828 aa17.26■□□□□ 0.35
SMPD3-205ENST00000563455 CEP85Q6P2H3 762 aa17.26■□□□□ 0.35
SMPD3-205ENST00000563455 CHD1LQ86WJ1 897 aa17.26■□□□□ 0.35
SMPD3-205ENST00000563455 SHANK3Q9BYB0 1731 aa17.26■□□□□ 0.35
SMPD3-205ENST00000563455 VIRMAQ69YN4 1812 aaKnown RBP17.26■□□□□ 0.35
SMPD3-205ENST00000563455 GNPATO15228 680 aa17.25■□□□□ 0.35
SMPD3-205ENST00000563455 STARD3NLO95772 234 aa17.25■□□□□ 0.35
SMPD3-205ENST00000563455 PDIA6Q15084 440 aa17.25■□□□□ 0.35
SMPD3-205ENST00000563455 TRAPPC3LQ5T215 181 aa17.25■□□□□ 0.35
SMPD3-205ENST00000563455 NLGN1Q8N2Q7 840 aa17.25■□□□□ 0.35
SMPD3-205ENST00000563455 MEIS3Q99687 375 aa17.25■□□□□ 0.35
SMPD3-205ENST00000563455 ATG3Q9NT62 314 aa17.25■□□□□ 0.35
SMPD3-205ENST00000563455 RTCBQ9Y3I0 505 aaKnown RBP17.25■□□□□ 0.35
SMPD3-205ENST00000563455 RGS3P49796 1198 aa17.24■□□□□ 0.35
SMPD3-205ENST00000563455 ATP8B2P98198 1209 aa17.24■□□□□ 0.35
SMPD3-205ENST00000563455 HSP90AB4PQ58FF6 505 aa17.24■□□□□ 0.35
SMPD3-205ENST00000563455 RC3H1Q5TC82 1133 aaKnown RBP17.24■□□□□ 0.35
SMPD3-205ENST00000563455 RBM42Q9BTD8 480 aaKnown RBP17.24■□□□□ 0.35
SMPD3-205ENST00000563455 USP44Q9H0E7 712 aa17.24■□□□□ 0.35
SMPD3-205ENST00000563455 ADRA2BP18089 450 aa17.23■□□□□ 0.35
SMPD3-205ENST00000563455 ANKRD13DQ6ZTN6 518 aa17.23■□□□□ 0.35
SMPD3-205ENST00000563455 RIC3Q7Z5B4 369 aa17.23■□□□□ 0.35
SMPD3-205ENST00000563455 LINC00116Q8NCU8 138 aa17.23■□□□□ 0.35
SMPD3-205ENST00000563455 MAP3K2Q9Y2U5 619 aa17.23■□□□□ 0.35
SMPD3-205ENST00000563455 N4BP2Q86UW6 1770 aaPredicted RBP17.23■□□□□ 0.35
SMPD3-205ENST00000563455 SIRT2Q8IXJ6 389 aa17.22■□□□□ 0.35
SMPD3-205ENST00000563455 USP16Q9Y5T5 823 aa17.22■□□□□ 0.35
SMPD3-205ENST00000563455 UTYO14607 1347 aa17.21■□□□□ 0.35
SMPD3-205ENST00000563455 ADCY9O60503 1353 aa17.21■□□□□ 0.35
SMPD3-205ENST00000563455 C1QTNF8P60827 252 aa17.21■□□□□ 0.35
SMPD3-205ENST00000563455 ANKRD45Q5TZF3 282 aa17.21■□□□□ 0.35
SMPD3-205ENST00000563455 PLBD2Q8NHP8 589 aa17.21■□□□□ 0.35
SMPD3-205ENST00000563455 METTL22Q9BUU2 404 aaPredicted RBP17.21■□□□□ 0.35
SMPD3-205ENST00000563455 C9orf78Q9NZ63 289 aaPredicted RBP17.21■□□□□ 0.35
SMPD3-205ENST00000563455 COL24A1Q17RW2 1714 aa17.21■□□□□ 0.35
SMPD3-205ENST00000563455 RAB11FIP3O75154 756 aa17.2■□□□□ 0.34
SMPD3-205ENST00000563455 MTX1Q13505 466 aa17.2■□□□□ 0.34
SMPD3-205ENST00000563455 ITPK1Q13572 414 aa17.2■□□□□ 0.34
SMPD3-205ENST00000563455 C5P01031 1676 aa17.2■□□□□ 0.34
SMPD3-205ENST00000563455 YBX3P16989 372 aaKnown RBP eCLIP17.19■□□□□ 0.34
SMPD3-205ENST00000563455 RFC4P35249 363 aa17.19■□□□□ 0.34
SMPD3-205ENST00000563455 COPS6Q7L5N1 327 aa17.19■□□□□ 0.34
SMPD3-205ENST00000563455 XAGE3Q8WTP9 111 aa17.19■□□□□ 0.34
SMPD3-205ENST00000563455 C1orf115Q9H7X2 142 aa17.19■□□□□ 0.34
SMPD3-205ENST00000563455 COL15A1P39059 1388 aa17.18■□□□□ 0.34
SMPD3-205ENST00000563455 UBR2Q8IWV8 1755 aa17.18■□□□□ 0.34
SMPD3-205ENST00000563455 KCPQ6ZWJ8 1503 aa17.18■□□□□ 0.34
SMPD3-205ENST00000563455 RPS6KA4O75676 772 aa17.18■□□□□ 0.34
SMPD3-205ENST00000563455 ANP32AP39687 249 aaKnown RBP17.18■□□□□ 0.34
SMPD3-205ENST00000563455 LRP10Q7Z4F1 713 aa17.18■□□□□ 0.34
SMPD3-205ENST00000563455 SSH3Q8TE77 659 aa17.18■□□□□ 0.34
SMPD3-205ENST00000563455 UPF2Q9HAU5 1272 aaKnown RBP17.18■□□□□ 0.34
SMPD3-205ENST00000563455 C4BP0C0L5 1744 aa17.18■□□□□ 0.34
SMPD3-205ENST00000563455 GRM8O00222 908 aa17.17■□□□□ 0.34
SMPD3-205ENST00000563455 TGFB2P61812 414 aa17.17■□□□□ 0.34
SMPD3-205ENST00000563455 PROSER3Q2NL68 480 aa17.17■□□□□ 0.34
SMPD3-205ENST00000563455 BMP2KLQ5H9B9 411 aa17.17■□□□□ 0.34
SMPD3-205ENST00000563455 NPM2Q86SE8 214 aaKnown RBP17.17■□□□□ 0.34
SMPD3-205ENST00000563455 LAMB4A4D0S4 1761 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms