RNA–Protein interactions for RNA: ENST00000562118.1

CDH1-204, Transcript of cadherin 1, humanhuman

TSL 2

Gene CDH1, Length 952 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-204ENST00000562118 MAP3K15Q6ZN16 1313 aa17.35■□□□□ 0.37
CDH1-204ENST00000562118 BRCA1P38398 1863 aaKnown RBP17.35■□□□□ 0.37
CDH1-204ENST00000562118 ANKRD31Q8N7Z5 1873 aa17.35■□□□□ 0.37
CDH1-204ENST00000562118 DDR1Q08345 913 aa17.34■□□□□ 0.37
CDH1-204ENST00000562118 CCDC30Q5VVM6 783 aa17.34■□□□□ 0.37
CDH1-204ENST00000562118 TTLL7Q6ZT98 887 aa17.34■□□□□ 0.37
CDH1-204ENST00000562118 HYPKQ9NX55 129 aa17.34■□□□□ 0.37
CDH1-204ENST00000562118 TBC1D2BQ9UPU7 963 aa17.34■□□□□ 0.37
CDH1-204ENST00000562118 DLEC1Q9Y238 1755 aa17.34■□□□□ 0.37
CDH1-204ENST00000562118 IBTKQ9P2D0 1353 aaPredicted RBP17.33■□□□□ 0.36
CDH1-204ENST00000562118 POLRMTO00411 1230 aaKnown RBP17.33■□□□□ 0.36
CDH1-204ENST00000562118 MMP10P09238 476 aa17.33■□□□□ 0.36
CDH1-204ENST00000562118 POLD1P28340 1107 aa17.33■□□□□ 0.36
CDH1-204ENST00000562118 HNRNPUQ00839 825 aaKnown RBP eCLIP17.33■□□□□ 0.36
CDH1-204ENST00000562118 NFIXQ14938 502 aa17.33■□□□□ 0.36
CDH1-204ENST00000562118 ARXQ96QS3 562 aa17.33■□□□□ 0.36
CDH1-204ENST00000562118 ELL2O00472 640 aaPredicted RBP17.32■□□□□ 0.36
CDH1-204ENST00000562118 ANXA1P04083 346 aa17.32■□□□□ 0.36
CDH1-204ENST00000562118 CT47B1P0C2W7 299 aaPredicted RBP17.32■□□□□ 0.36
CDH1-204ENST00000562118 MYL6BP14649 208 aa17.32■□□□□ 0.36
CDH1-204ENST00000562118 ZNF428Q96B54 188 aa17.32■□□□□ 0.36
CDH1-204ENST00000562118 GOLGB1Q14789 3259 aaKnown RBP17.31■□□□□ 0.36
CDH1-204ENST00000562118 CARMIL3Q8ND23 1372 aa17.31■□□□□ 0.36
CDH1-204ENST00000562118 N4BP2Q86UW6 1770 aaPredicted RBP17.31■□□□□ 0.36
CDH1-204ENST00000562118 HLFQ16534 295 aa17.31■□□□□ 0.36
CDH1-204ENST00000562118 TBC1D9BQ66K14 1250 aa17.31■□□□□ 0.36
CDH1-204ENST00000562118 XAGE3Q8WTP9 111 aa17.31■□□□□ 0.36
CDH1-204ENST00000562118 NECTIN2Q92692 538 aa17.31■□□□□ 0.36
CDH1-204ENST00000562118 GIGYF2Q6Y7W6 1299 aaKnown RBP17.3■□□□□ 0.36
CDH1-204ENST00000562118 COPS6Q7L5N1 327 aa17.3■□□□□ 0.36
CDH1-204ENST00000562118 ZNF652Q9Y2D9 606 aa17.3■□□□□ 0.36
CDH1-204ENST00000562118 RIC1Q4ADV7 1423 aa17.3■□□□□ 0.36
CDH1-204ENST00000562118 KIF6Q6ZMV9 814 aa17.29■□□□□ 0.36
CDH1-204ENST00000562118 NPM2Q86SE8 214 aaKnown RBP17.29■□□□□ 0.36
CDH1-204ENST00000562118 ZNF34Q8IZ26 560 aa17.29■□□□□ 0.36
CDH1-204ENST00000562118 PLBD2Q8NHP8 589 aa17.29■□□□□ 0.36
CDH1-204ENST00000562118 ZNF330Q9Y3S2 320 aaPredicted RBP17.29■□□□□ 0.36
CDH1-204ENST00000562118 LAMB2P55268 1798 aa17.29■□□□□ 0.36
CDH1-204ENST00000562118 COL11A2P13942 1736 aaPredicted RBP17.28■□□□□ 0.36
CDH1-204ENST00000562118 CD2APQ9Y5K6 639 aa17.28■□□□□ 0.36
CDH1-204ENST00000562118 UBN2Q6ZU65 1347 aa17.27■□□□□ 0.36
CDH1-204ENST00000562118 PXDNLA1KZ92 1463 aa17.27■□□□□ 0.36
CDH1-204ENST00000562118 BRPF1P55201 1214 aaPredicted RBP17.27■□□□□ 0.36
CDH1-204ENST00000562118 PHAXQ9H814 394 aaKnown RBP17.27■□□□□ 0.36
CDH1-204ENST00000562118 ADCY9O60503 1353 aa17.27■□□□□ 0.35
CDH1-204ENST00000562118 TNRC6CQ9HCJ0 1690 aaKnown RBP17.26■□□□□ 0.35
CDH1-204ENST00000562118 FHDC1Q9C0D6 1143 aaPredicted RBP17.26■□□□□ 0.35
CDH1-204ENST00000562118 PARP3Q9Y6F1 533 aa17.26■□□□□ 0.35
CDH1-204ENST00000562118 UTRNP46939 3433 aa17.25■□□□□ 0.35
CDH1-204ENST00000562118 DDX60Q8IY21 1712 aaKnown RBP17.25■□□□□ 0.35
CDH1-204ENST00000562118 TRIM28Q13263 835 aaKnown RBP17.25■□□□□ 0.35
CDH1-204ENST00000562118 ALDH1L2Q3SY69 923 aa17.25■□□□□ 0.35
CDH1-204ENST00000562118 ANKRD13DQ6ZTN6 518 aa17.25■□□□□ 0.35
CDH1-204ENST00000562118 SYT17Q9BSW7 474 aa17.25■□□□□ 0.35
CDH1-204ENST00000562118 STK31Q9BXU1 1019 aa17.25■□□□□ 0.35
CDH1-204ENST00000562118 ZBTB3Q9H5J0 574 aa17.25■□□□□ 0.35
CDH1-204ENST00000562118 SLC4A2P04920 1241 aa17.24■□□□□ 0.35
CDH1-204ENST00000562118 SERPINB2P05120 415 aa17.24■□□□□ 0.35
CDH1-204ENST00000562118 TCIRG1Q13488 830 aa17.24■□□□□ 0.35
CDH1-204ENST00000562118 HSP90AB3PQ58FF7 597 aa17.24■□□□□ 0.35
CDH1-204ENST00000562118 G2E3Q7L622 706 aa17.24■□□□□ 0.35
CDH1-204ENST00000562118 SETDB2Q96T68 719 aa17.24■□□□□ 0.35
CDH1-204ENST00000562118 ISCA1Q9BUE6 129 aa17.24■□□□□ 0.35
CDH1-204ENST00000562118 RNF123Q5XPI4 1314 aa17.23■□□□□ 0.35
CDH1-204ENST00000562118 FLIIQ13045 1269 aa17.23■□□□□ 0.35
CDH1-204ENST00000562118 PRR5LQ6MZQ0 368 aa17.23■□□□□ 0.35
CDH1-204ENST00000562118 ARFGEF1Q9Y6D6 1849 aa17.23■□□□□ 0.35
CDH1-204ENST00000562118 KLRG2A4D1S0 409 aaPredicted RBP17.22■□□□□ 0.35
CDH1-204ENST00000562118 NTSR2O95665 410 aa17.22■□□□□ 0.35
CDH1-204ENST00000562118 AIMP1Q12904 312 aaKnown RBP17.22■□□□□ 0.35
CDH1-204ENST00000562118 PARP10Q53GL7 1025 aa17.22■□□□□ 0.35
CDH1-204ENST00000562118 MRPL50Q8N5N7 158 aaKnown RBP17.22■□□□□ 0.35
CDH1-204ENST00000562118 PPP1R1BQ9UD71 204 aaPredicted RBP17.22■□□□□ 0.35
CDH1-204ENST00000562118 NIP7Q9Y221 180 aaKnown RBP eCLIP17.22■□□□□ 0.35
CDH1-204ENST00000562118 TGFB2P61812 414 aa17.21■□□□□ 0.35
CDH1-204ENST00000562118 KSR2Q6VAB6 950 aa17.21■□□□□ 0.35
CDH1-204ENST00000562118 SSH1Q8WYL5 1049 aa17.21■□□□□ 0.35
CDH1-204ENST00000562118 TCERG1O14776 1098 aaKnown RBP17.2■□□□□ 0.34
CDH1-204ENST00000562118 DDX58O95786 925 aaKnown RBP17.2■□□□□ 0.34
CDH1-204ENST00000562118 NLRP10Q86W26 655 aa17.2■□□□□ 0.34
CDH1-204ENST00000562118 NLGN2Q8NFZ4 835 aa17.2■□□□□ 0.34
CDH1-204ENST00000562118 METTL22Q9BUU2 404 aaPredicted RBP17.2■□□□□ 0.34
CDH1-204ENST00000562118 ABCC12Q96J65 1359 aa17.19■□□□□ 0.34
CDH1-204ENST00000562118 PI4KAP2A4QPH2 592 aa17.19■□□□□ 0.34
CDH1-204ENST00000562118 KCNA3P22001 575 aa17.19■□□□□ 0.34
CDH1-204ENST00000562118 RARSP54136 660 aaKnown RBP17.19■□□□□ 0.34
CDH1-204ENST00000562118 SUSD4Q5VX71 490 aa17.19■□□□□ 0.34
CDH1-204ENST00000562118 BICDL1Q6ZP65 573 aa17.19■□□□□ 0.34
CDH1-204ENST00000562118 PI4KAP1Q8N8J0 262 aa17.19■□□□□ 0.34
CDH1-204ENST00000562118 CNBD1Q8NA66 436 aa17.19■□□□□ 0.34
CDH1-204ENST00000562118 BRIP1Q9BX63 1249 aa17.19■□□□□ 0.34
CDH1-204ENST00000562118 NYXQ9GZU5 481 aa17.19■□□□□ 0.34
CDH1-204ENST00000562118 PDZRN3Q9UPQ7 1066 aa17.18■□□□□ 0.34
CDH1-204ENST00000562118 PTPRCP08575 1304 aa17.18■□□□□ 0.34
CDH1-204ENST00000562118 MYH3P11055 1940 aa17.17■□□□□ 0.34
CDH1-204ENST00000562118 IGKV5-2P06315 115 aa17.17■□□□□ 0.34
CDH1-204ENST00000562118 SLC10A5Q5PT55 438 aa17.17■□□□□ 0.34
CDH1-204ENST00000562118 TPTE2Q6XPS3 522 aa17.17■□□□□ 0.34
CDH1-204ENST00000562118 RIC3Q7Z5B4 369 aa17.17■□□□□ 0.34
CDH1-204ENST00000562118 NBPF5PQ86XG9 351 aaPredicted RBP17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms