RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 SLC9A9Q8IVB4 645 aa9.29□□□□□ -0.92
LRRC28-220ENST00000561253 POLMQ9NP87 494 aaPredicted RBP9.29□□□□□ -0.92
LRRC28-220ENST00000561253 HRH3Q9Y5N1 445 aa9.29□□□□□ -0.92
LRRC28-220ENST00000561253 ATAD2Q6PL18 1390 aa9.28□□□□□ -0.92
LRRC28-220ENST00000561253 EHBP1L1Q8N3D4 1523 aa9.28□□□□□ -0.92
LRRC28-220ENST00000561253 SPINT1O43278 529 aa9.28□□□□□ -0.92
LRRC28-220ENST00000561253 CTC1Q2NKJ3 1217 aa9.28□□□□□ -0.92
LRRC28-220ENST00000561253 MRPL14Q6P1L8 145 aaKnown RBP9.28□□□□□ -0.92
LRRC28-220ENST00000561253 NBPF15Q8N660 670 aa9.28□□□□□ -0.92
LRRC28-220ENST00000561253 GAS2L2Q8NHY3 880 aa9.28□□□□□ -0.92
LRRC28-220ENST00000561253 C1orf216Q8TAB5 229 aa9.28□□□□□ -0.92
LRRC28-220ENST00000561253 CCER1Q8TC90 406 aaPredicted RBP9.28□□□□□ -0.92
LRRC28-220ENST00000561253 INSM2Q96T92 566 aaPredicted RBP9.28□□□□□ -0.92
LRRC28-220ENST00000561253 PLCH2O75038 1416 aa9.28□□□□□ -0.92
LRRC28-220ENST00000561253 COL17A1Q9UMD9 1497 aaPredicted RBP9.28□□□□□ -0.92
LRRC28-220ENST00000561253 MTUS2Q5JR59 1369 aa9.27□□□□□ -0.93
LRRC28-220ENST00000561253 ARAP3Q8WWN8 1544 aa9.27□□□□□ -0.93
LRRC28-220ENST00000561253 CDK2AP1O14519 115 aa9.27□□□□□ -0.93
LRRC28-220ENST00000561253 AXIN1O15169 862 aa9.27□□□□□ -0.93
LRRC28-220ENST00000561253 PPP1R12BO60237 982 aaPredicted RBP9.27□□□□□ -0.93
LRRC28-220ENST00000561253 ARID4AP29374 1257 aaPredicted RBP9.27□□□□□ -0.93
LRRC28-220ENST00000561253 GPC1P35052 558 aa9.27□□□□□ -0.93
LRRC28-220ENST00000561253 FOXK2Q01167 660 aa9.27□□□□□ -0.93
LRRC28-220ENST00000561253 SCARF1Q14162 830 aa9.27□□□□□ -0.93
LRRC28-220ENST00000561253 SLC27A3Q5K4L6 730 aa9.27□□□□□ -0.93
LRRC28-220ENST00000561253 TBCELQ5QJ74 424 aa9.27□□□□□ -0.93
LRRC28-220ENST00000561253 C6orf118Q5T5N4 469 aa9.27□□□□□ -0.93
LRRC28-220ENST00000561253 VTI1AQ96AJ9 217 aa9.27□□□□□ -0.93
LRRC28-220ENST00000561253 ZSCAN10Q96SZ4 725 aaPredicted RBP9.27□□□□□ -0.93
LRRC28-220ENST00000561253 MTMR7Q9Y216 660 aa9.27□□□□□ -0.93
LRRC28-220ENST00000561253 CHMP3Q9Y3E7 222 aa9.27□□□□□ -0.93
LRRC28-220ENST00000561253 GPATCH8Q9UKJ3 1502 aaKnown RBP9.26□□□□□ -0.93
LRRC28-220ENST00000561253 FOXO3O43524 673 aa9.26□□□□□ -0.93
LRRC28-220ENST00000561253 SMCPP49901 116 aaPredicted RBP9.26□□□□□ -0.93
LRRC28-220ENST00000561253 TMEM214Q6NUQ4 689 aaKnown RBP9.26□□□□□ -0.93
LRRC28-220ENST00000561253 FHDC1Q9C0D6 1143 aaPredicted RBP9.26□□□□□ -0.93
LRRC28-220ENST00000561253 IVNS1ABPQ9Y6Y0 642 aa9.26□□□□□ -0.93
LRRC28-220ENST00000561253 C21orf2O43822 256 aa9.25□□□□□ -0.93
LRRC28-220ENST00000561253 BMP1P13497 986 aa9.25□□□□□ -0.93
LRRC28-220ENST00000561253 RNF144AP50876 292 aaPredicted RBP9.25□□□□□ -0.93
LRRC28-220ENST00000561253 PSMA6P60900 246 aaKnown RBP9.25□□□□□ -0.93
LRRC28-220ENST00000561253 FKBP5Q13451 457 aaPredicted RBP9.25□□□□□ -0.93
LRRC28-220ENST00000561253 TAS1R3Q7RTX0 852 aa9.25□□□□□ -0.93
LRRC28-220ENST00000561253 MKNK1Q9BUB5 465 aa9.25□□□□□ -0.93
LRRC28-220ENST00000561253 IQSEC3Q9UPP2 1182 aaPredicted RBP9.25□□□□□ -0.93
LRRC28-220ENST00000561253 NCOA2Q15596 1464 aa9.25□□□□□ -0.93
LRRC28-220ENST00000561253 NEO1Q92859 1461 aa9.24□□□□□ -0.93
LRRC28-220ENST00000561253 PTCD1O75127 700 aaKnown RBP9.24□□□□□ -0.93
LRRC28-220ENST00000561253 SCNN1AP37088 669 aa9.24□□□□□ -0.93
LRRC28-220ENST00000561253 CTSOP43234 321 aaPredicted RBP9.24□□□□□ -0.93
LRRC28-220ENST00000561253 PPARGC1BQ86YN6 1023 aaKnown RBP9.24□□□□□ -0.93
LRRC28-220ENST00000561253 PURBQ96QR8 312 aaKnown RBP9.24□□□□□ -0.93
LRRC28-220ENST00000561253 CABP1Q9NZU7 370 aa9.24□□□□□ -0.93
LRRC28-220ENST00000561253 GNEQ9Y223 722 aaKnown RBP9.24□□□□□ -0.93
LRRC28-220ENST00000561253 USP3Q9Y6I4 520 aa9.24□□□□□ -0.93
LRRC28-220ENST00000561253 TEX14Q8IWB6 1497 aa9.23□□□□□ -0.93
LRRC28-220ENST00000561253 GNASQ5JWF2 1037 aa9.23□□□□□ -0.93
LRRC28-220ENST00000561253 TXNDC2Q86VQ3 553 aa9.23□□□□□ -0.93
LRRC28-220ENST00000561253 NIFKQ9BYG3 293 aaKnown RBP9.23□□□□□ -0.93
LRRC28-220ENST00000561253 IRX2Q9BZI1 471 aaPredicted RBP9.23□□□□□ -0.93
LRRC28-220ENST00000561253 GRIP2Q9C0E4 1043 aa9.23□□□□□ -0.93
LRRC28-220ENST00000561253 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.23□□□□□ -0.937e-8■■■■■ 186.3
LRRC28-220ENST00000561253 PODXL2Q9NZ53 605 aa9.23□□□□□ -0.93
LRRC28-220ENST00000561253 SERTM1A2A2V5 107 aa9.22□□□□□ -0.93
LRRC28-220ENST00000561253 FOXD4L5Q5VV16 416 aaPredicted RBP9.22□□□□□ -0.93
LRRC28-220ENST00000561253 CRIPAKQ8N1N5 446 aa9.22□□□□□ -0.93
LRRC28-220ENST00000561253 STAG2Q8N3U4 1231 aa9.22□□□□□ -0.93
LRRC28-220ENST00000561253 RHBDD1Q8TEB9 315 aa9.22□□□□□ -0.93
LRRC28-220ENST00000561253 GZF1Q9H116 711 aaPredicted RBP9.22□□□□□ -0.93
LRRC28-220ENST00000561253 ZNF232Q9UNY5 417 aa9.22□□□□□ -0.93
LRRC28-220ENST00000561253 PREX2Q70Z35 1606 aa9.22□□□□□ -0.93
LRRC28-220ENST00000561253 PHLDB1Q86UU1 1377 aa9.22□□□□□ -0.93
LRRC28-220ENST00000561253 FANCAO15360 1455 aa9.21□□□□□ -0.93
LRRC28-220ENST00000561253 TEAD4Q15561 434 aa9.21□□□□□ -0.94
LRRC28-220ENST00000561253 TRIM46Q7Z4K8 759 aa9.21□□□□□ -0.94
LRRC28-220ENST00000561253 COL26A1Q96A83 441 aa9.21□□□□□ -0.94
LRRC28-220ENST00000561253 C2orf49Q9BVC5 232 aaPredicted RBP9.21□□□□□ -0.94
LRRC28-220ENST00000561253 CDC42BPAQ5VT25 1732 aa9.21□□□□□ -0.94
LRRC28-220ENST00000561253 CDC42BPBQ9Y5S2 1711 aa9.21□□□□□ -0.94
LRRC28-220ENST00000561253 AKNAQ7Z591 1439 aa9.21□□□□□ -0.94
LRRC28-220ENST00000561253 ARHGEF12Q9NZN5 1544 aa9.21□□□□□ -0.94
LRRC28-220ENST00000561253 TSPOAP1O95153 1857 aa9.2□□□□□ -0.94
LRRC28-220ENST00000561253 TTLL8A6PVC2 850 aa9.2□□□□□ -0.94
LRRC28-220ENST00000561253 NOS2P35228 1153 aa9.2□□□□□ -0.94
LRRC28-220ENST00000561253 RNF217Q8TC41 542 aa9.2□□□□□ -0.94
LRRC28-220ENST00000561253 SEPT3Q9UH03 358 aa9.2□□□□□ -0.94
LRRC28-220ENST00000561253 CCNB3Q8WWL7 1395 aa9.2□□□□□ -0.94
LRRC28-220ENST00000561253 SUPT6HQ7KZ85 1726 aaKnown RBP9.19□□□□□ -0.94
LRRC28-220ENST00000561253 ST8SIA5O15466 376 aa9.19□□□□□ -0.94
LRRC28-220ENST00000561253 ABL1P00519 1130 aa9.19□□□□□ -0.94
LRRC28-220ENST00000561253 SERPINB4P48594 390 aa9.19□□□□□ -0.94
LRRC28-220ENST00000561253 NAA30Q147X3 362 aaPredicted RBP9.19□□□□□ -0.94
LRRC28-220ENST00000561253 CAPN12Q6ZSI9 719 aa9.19□□□□□ -0.94
LRRC28-220ENST00000561253 LYSMD3Q7Z3D4 306 aa9.19□□□□□ -0.94
LRRC28-220ENST00000561253 PRICKLE2Q7Z3G6 844 aa9.19□□□□□ -0.94
LRRC28-220ENST00000561253 L3MBTL2Q969R5 705 aa9.19□□□□□ -0.94
LRRC28-220ENST00000561253 ZFP42Q96MM3 310 aa9.19□□□□□ -0.94
LRRC28-220ENST00000561253 AAASQ9NRG9 546 aa9.19□□□□□ -0.94
LRRC28-220ENST00000561253 PARP3Q9Y6F1 533 aa9.19□□□□□ -0.94
LRRC28-220ENST00000561253 MYOM3Q5VTT5 1437 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms