RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, human

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-218	ENST00000560541	LGR6	Q9HBX8	967 aa		13.61	□□□□□ -0.23
CUX1-218	ENST00000560541	TCHH	Q07283	1943 aa		13.6	□□□□□ -0.23
CUX1-218	ENST00000560541	TUBGCP6	Q96RT7	1819 aa		13.6	□□□□□ -0.23
CUX1-218	ENST00000560541	DYNC1I1	O14576	645 aa		13.6	□□□□□ -0.23
CUX1-218	ENST00000560541	SGSM2	O43147	1006 aa		13.6	□□□□□ -0.23
CUX1-218	ENST00000560541	ZNF500	O60304	480 aa	Predicted RBP	13.6	□□□□□ -0.23
CUX1-218	ENST00000560541	RAD50	Q92878	1312 aa		13.6	□□□□□ -0.23
CUX1-218	ENST00000560541	ZNF771	Q7L3S4	317 aa	Predicted RBP	13.6	□□□□□ -0.23
CUX1-218	ENST00000560541	SYAP1	Q96A49	352 aa	Predicted RBP	13.6	□□□□□ -0.23
CUX1-218	ENST00000560541	RBM33	Q96EV2	1170 aa	Known RBP	13.6	□□□□□ -0.23
CUX1-218	ENST00000560541	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.6	□□□□□ -0.23
CUX1-218	ENST00000560541	FIBP	O43427	364 aa		13.59	□□□□□ -0.23
CUX1-218	ENST00000560541	ATP2B3	Q16720	1220 aa		13.59	□□□□□ -0.23
CUX1-218	ENST00000560541	CCDC39	Q9UFE4	941 aa		13.59	□□□□□ -0.23
CUX1-218	ENST00000560541	LARGE1	O95461	756 aa		13.59	□□□□□ -0.23
CUX1-218	ENST00000560541	IRX5	P78411	483 aa	Predicted RBP	13.59	□□□□□ -0.23
CUX1-218	ENST00000560541	RUFY3	Q7L099	469 aa		13.59	□□□□□ -0.23
CUX1-218	ENST00000560541	CNTROB	Q8N137	903 aa		13.59	□□□□□ -0.23
CUX1-218	ENST00000560541	KIF1BP	Q96EK5	621 aa		13.59	□□□□□ -0.23
CUX1-218	ENST00000560541	LSG1	Q9H089	658 aa	Known RBP	13.59	□□□□□ -0.23
CUX1-218	ENST00000560541	SETD1B	Q9UPS6	1966 aa	Known RBP	13.58	□□□□□ -0.24
CUX1-218	ENST00000560541	CAST	P20810	708 aa	Known RBP	13.58	□□□□□ -0.24
CUX1-218	ENST00000560541	POLA2	Q14181	598 aa		13.58	□□□□□ -0.24
CUX1-218	ENST00000560541	USP25	Q9UHP3	1055 aa		13.58	□□□□□ -0.24
CUX1-218	ENST00000560541	PIK3C2A	O00443	1686 aa		13.58	□□□□□ -0.24
CUX1-218	ENST00000560541	RAB11FIP3	O75154	756 aa		13.58	□□□□□ -0.24
CUX1-218	ENST00000560541	TERF1	P54274	439 aa		13.58	□□□□□ -0.24
CUX1-218	ENST00000560541	KCNG1	Q9UIX4	513 aa		13.58	□□□□□ -0.24
CUX1-218	ENST00000560541	SYT1	P21579	422 aa		13.57	□□□□□ -0.24
CUX1-218	ENST00000560541	DNAAF4	Q8WXU2	420 aa		13.57	□□□□□ -0.24
CUX1-218	ENST00000560541	AOX1	Q06278	1338 aa		13.57	□□□□□ -0.24
CUX1-218	ENST00000560541	PLCB2	Q00722	1185 aa		13.57	□□□□□ -0.24
CUX1-218	ENST00000560541	PA2G4	Q9UQ80	394 aa	Known RBP	13.57	□□□□□ -0.24
CUX1-218	ENST00000560541	HCLS1	P14317	486 aa	Predicted RBP	13.57	□□□□□ -0.24
CUX1-218	ENST00000560541	CCDC83	Q8IWF9	413 aa		13.57	□□□□□ -0.24
CUX1-218	ENST00000560541	TTC14	Q96N46	770 aa		13.57	□□□□□ -0.24
CUX1-218	ENST00000560541	SMC3	Q9UQE7	1217 aa		13.57	□□□□□ -0.24
CUX1-218	ENST00000560541	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	13.57	□□□□□ -0.24
CUX1-218	ENST00000560541	DIP2A	Q14689	1571 aa		13.56	□□□□□ -0.24
CUX1-218	ENST00000560541	STX6	O43752	255 aa		13.56	□□□□□ -0.24
CUX1-218	ENST00000560541	ZSCAN22	P10073	491 aa	Predicted RBP	13.56	□□□□□ -0.24
CUX1-218	ENST00000560541	CHRM1	P11229	460 aa	Predicted RBP	13.56	□□□□□ -0.24
CUX1-218	ENST00000560541	PTH1R	Q03431	593 aa		13.56	□□□□□ -0.24
CUX1-218	ENST00000560541	BEND3	Q5T5X7	828 aa		13.56	□□□□□ -0.24
CUX1-218	ENST00000560541	DIAPH3	Q9NSV4	1193 aa		13.56	□□□□□ -0.24
CUX1-218	ENST00000560541	PHF14	O94880	888 aa		13.56	□□□□□ -0.24
CUX1-218	ENST00000560541	KCNA6	P17658	529 aa		13.56	□□□□□ -0.24
CUX1-218	ENST00000560541	EIF4A1	P60842	406 aa	Known RBP	13.56	□□□□□ -0.24
CUX1-218	ENST00000560541	ADCK5	Q3MIX3	580 aa		13.56	□□□□□ -0.24
CUX1-218	ENST00000560541	PRPF40B	Q6NWY9	871 aa	Known RBP	13.56	□□□□□ -0.24
CUX1-218	ENST00000560541	MPRIP	Q6WCQ1	1025 aa		13.56	□□□□□ -0.24
CUX1-218	ENST00000560541	LIMCH1	Q9UPQ0	1083 aa		13.56	□□□□□ -0.24
CUX1-218	ENST00000560541	NBPF6	Q5VWK0	638 aa		13.55	□□□□□ -0.24
CUX1-218	ENST00000560541	CNPY4	Q8N129	248 aa		13.55	□□□□□ -0.24
CUX1-218	ENST00000560541	NBPF4	Q96M43	638 aa		13.55	□□□□□ -0.24
CUX1-218	ENST00000560541	NWD1	Q149M9	1564 aa		13.55	□□□□□ -0.24
CUX1-218	ENST00000560541	LRRC37A3	O60309	1634 aa		13.55	□□□□□ -0.24
CUX1-218	ENST00000560541	LRRC59	Q96AG4	307 aa	Known RBP	13.55	□□□□□ -0.24
CUX1-218	ENST00000560541	JAKMIP1	Q96N16	626 aa	Known RBP	13.55	□□□□□ -0.24
CUX1-218	ENST00000560541	C17orf53	Q8N3J3	647 aa	Predicted RBP	13.55	□□□□□ -0.24
CUX1-218	ENST00000560541	IL17RA	Q96F46	866 aa		13.54	□□□□□ -0.24
CUX1-218	ENST00000560541	TEF	Q10587	303 aa		13.54	□□□□□ -0.24
CUX1-218	ENST00000560541	CCDC183	Q5T5S1	534 aa		13.54	□□□□□ -0.24
CUX1-218	ENST00000560541	GIMAP6	Q6P9H5	292 aa		13.54	□□□□□ -0.24
CUX1-218	ENST00000560541	NECAB1	Q8N987	351 aa		13.54	□□□□□ -0.24
CUX1-218	ENST00000560541	TRERF1	Q96PN7	1200 aa		13.54	□□□□□ -0.24
CUX1-218	ENST00000560541	PXDNL	A1KZ92	1463 aa		13.53	□□□□□ -0.24
CUX1-218	ENST00000560541	VPS37C	A5D8V6	355 aa	Predicted RBP	13.53	□□□□□ -0.24
CUX1-218	ENST00000560541	BTBD11	A6QL63	1104 aa		13.53	□□□□□ -0.24
CUX1-218	ENST00000560541	F13A1	P00488	732 aa		13.53	□□□□□ -0.24
CUX1-218	ENST00000560541	GJB2	P29033	226 aa		13.53	□□□□□ -0.24
CUX1-218	ENST00000560541	DNM1	Q05193	864 aa	Known RBP	13.53	□□□□□ -0.24
CUX1-218	ENST00000560541	COL9A3	Q14050	684 aa	Predicted RBP	13.53	□□□□□ -0.24
CUX1-218	ENST00000560541	PROSER3	Q2NL68	480 aa		13.53	□□□□□ -0.24
CUX1-218	ENST00000560541	CWF19L2	Q2TBE0	894 aa	Known RBP	13.53	□□□□□ -0.24
CUX1-218	ENST00000560541	TTC12	Q9H892	705 aa	Predicted RBP	13.53	□□□□□ -0.24
CUX1-218	ENST00000560541	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.53	□□□□□ -0.24
CUX1-218	ENST00000560541	CHMP3	Q9Y3E7	222 aa		13.53	□□□□□ -0.24
CUX1-218	ENST00000560541	TBX22	Q9Y458	520 aa		13.53	□□□□□ -0.24
CUX1-218	ENST00000560541	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.53	□□□□□ -0.24
CUX1-218	ENST00000560541	PRAMEF22	A3QJZ6	481 aa		13.53	□□□□□ -0.24
CUX1-218	ENST00000560541	CLASRP	Q8N2M8	674 aa	Known RBP	13.53	□□□□□ -0.24
CUX1-218	ENST00000560541	HYPK	Q9NX55	129 aa		13.53	□□□□□ -0.24
CUX1-218	ENST00000560541	GLRX3	O76003	335 aa	Known RBP	13.53	□□□□□ -0.24
CUX1-218	ENST00000560541	MYCN	P04198	464 aa	Predicted RBP	13.53	□□□□□ -0.24
CUX1-218	ENST00000560541	MCM5	P33992	734 aa		13.53	□□□□□ -0.24
CUX1-218	ENST00000560541	KIAA2012	Q0VF49	1180 aa		13.53	□□□□□ -0.24
CUX1-218	ENST00000560541	RNF216	Q9NWF9	866 aa	Predicted RBP	13.53	□□□□□ -0.24
CUX1-218	ENST00000560541	ADCY5	O95622	1261 aa		13.52	□□□□□ -0.24
CUX1-218	ENST00000560541	CSPP1	Q1MSJ5	1256 aa		13.52	□□□□□ -0.24
CUX1-218	ENST00000560541	TCEANC2	Q96MN5	208 aa		13.52	□□□□□ -0.24
CUX1-218	ENST00000560541	PDRG1	Q9NUG6	133 aa		13.52	□□□□□ -0.24
CUX1-218	ENST00000560541	MAP3K2	Q9Y2U5	619 aa		13.52	□□□□□ -0.24
CUX1-218	ENST00000560541	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	13.52	□□□□□ -0.24
CUX1-218	ENST00000560541	ADCY9	O60503	1353 aa		13.52	□□□□□ -0.25
CUX1-218	ENST00000560541	IFIT2	P09913	472 aa	Known RBP	13.52	□□□□□ -0.25
CUX1-218	ENST00000560541	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.52	□□□□□ -0.25
CUX1-218	ENST00000560541	UBE2H	P62256	183 aa		13.51	□□□□□ -0.25
CUX1-218	ENST00000560541	SASS6	Q6UVJ0	657 aa		13.51	□□□□□ -0.25
CUX1-218	ENST00000560541	AACS	Q86V21	672 aa		13.51	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms